##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139511_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6999906 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.50693466455121 33.0 33.0 33.0 33.0 33.0 2 32.54251557092338 33.0 33.0 33.0 33.0 33.0 3 32.56113939244327 33.0 33.0 33.0 33.0 33.0 4 36.467125558543216 37.0 37.0 37.0 37.0 37.0 5 36.49148459993606 37.0 37.0 37.0 37.0 37.0 6 36.48201875853761 37.0 37.0 37.0 37.0 37.0 7 36.45766028858102 37.0 37.0 37.0 37.0 37.0 8 36.45074505286214 37.0 37.0 37.0 37.0 37.0 9 36.49163317335976 37.0 37.0 37.0 37.0 37.0 10-11 36.41178710114107 37.0 37.0 37.0 37.0 37.0 12-13 36.41307411842388 37.0 37.0 37.0 37.0 37.0 14-15 38.379699955970835 40.0 37.0 40.0 37.0 40.0 16-17 38.32937763735684 40.0 37.0 40.0 37.0 40.0 18-19 38.33022543445583 40.0 37.0 40.0 37.0 40.0 20-21 38.324293671468396 40.0 37.0 40.0 37.0 40.0 22-23 38.32331690022945 40.0 37.0 40.0 37.0 40.0 24-25 38.30591630890292 40.0 37.0 40.0 37.0 40.0 26-27 38.19046165264473 40.0 37.0 40.0 37.0 40.0 28-29 38.12087170105266 40.0 37.0 40.0 35.0 40.0 30-31 37.98449218819621 40.0 37.0 40.0 33.0 40.0 32-33 37.99033689458746 40.0 37.0 40.0 33.0 40.0 34-35 37.938051450899515 40.0 37.0 40.0 33.0 40.0 36-37 37.8598642452215 40.0 37.0 40.0 33.0 40.0 38-39 37.7957954890132 40.0 37.0 40.0 33.0 40.0 40-41 37.81337131698717 40.0 37.0 40.0 33.0 40.0 42-43 37.75082592147538 40.0 37.0 40.0 33.0 40.0 44-45 37.68274676848365 40.0 37.0 40.0 33.0 40.0 46-47 37.644620348156906 40.0 37.0 40.0 33.0 40.0 48-49 37.620755803862735 40.0 37.0 40.0 33.0 40.0 50-51 37.51802231220595 40.0 37.0 40.0 33.0 40.0 52-53 37.418235038872545 40.0 37.0 40.0 33.0 40.0 54-55 37.25034545188712 40.0 37.0 40.0 33.0 40.0 56-57 37.13137812847825 37.0 37.0 40.0 33.0 40.0 58-59 36.967060905735764 37.0 37.0 40.0 33.0 40.0 60-61 36.839856809545694 37.0 37.0 40.0 33.0 40.0 62-63 36.66888475259212 37.0 37.0 40.0 33.0 40.0 64-65 36.497374557009266 37.0 37.0 40.0 33.0 40.0 66-67 36.26987948326705 37.0 37.0 40.0 33.0 40.0 68-69 36.04296933948501 37.0 37.0 40.0 33.0 40.0 70-71 35.79588273192 37.0 35.0 37.0 33.0 40.0 72-73 35.586902747080956 37.0 33.0 37.0 33.0 40.0 74-75 35.37251858842928 37.0 33.0 37.0 33.0 40.0 76-77 33.66327065013272 35.0 33.0 37.0 27.0 37.0 78-79 34.88331026033253 37.0 33.0 37.0 33.0 37.0 80-81 34.96766803347632 37.0 33.0 37.0 33.0 37.0 82-83 34.822414568325456 37.0 33.0 37.0 33.0 37.0 84-85 34.69467489569935 37.0 33.0 37.0 33.0 37.0 86-87 34.58355416942453 37.0 33.0 37.0 33.0 37.0 88-89 34.42060902680011 37.0 33.0 37.0 30.0 37.0 90-91 34.429461432552614 37.0 33.0 37.0 30.0 37.0 92-93 34.363010284299904 37.0 33.0 37.0 30.0 37.0 94-95 34.338745384307586 37.0 33.0 37.0 27.0 37.0 96-97 34.3485510031081 37.0 33.0 37.0 33.0 37.0 98-99 34.341073002034506 37.0 33.0 37.0 33.0 37.0 100 34.360002666890615 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 10.0 20 78.0 21 342.0 22 1209.0 23 3388.0 24 7836.0 25 15525.0 26 26429.0 27 41394.0 28 61197.0 29 84939.0 30 114767.0 31 151913.0 32 200217.0 33 268274.0 34 365861.0 35 528612.0 36 907987.0 37 2047455.0 38 2126224.0 39 46246.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.47859985548377 20.165656510244567 14.451836924667274 23.903906709604385 2 14.648868141943622 20.835122643075493 41.52027184365047 22.995737371330417 3 17.903897566624465 26.360982561765827 30.663454623533514 25.071665248076187 4 12.427495454938967 18.372661004304916 38.17962698356235 31.02021655719377 5 13.407565758740189 37.81480779884758 35.34017456805849 13.437451874353743 6 29.943992017023113 37.57152071566788 18.706437739423233 13.778049527885775 7 26.699272818806424 32.64012402452261 22.495587797893286 18.165015358777676 8 24.92474898948643 36.30423037109355 20.913966558979507 17.85705408044051 9 25.80284649536722 16.69246701312846 20.509618272016798 36.99506821948752 10-11 24.42418904944325 26.486792987356623 28.51840261360837 20.570615349591765 12-13 25.467315370847608 23.965044660972826 28.4303276466597 22.13731232151986 14-15 22.60620698404281 25.33637021324257 25.9069066683734 26.150516134341217 16-17 22.16730481809327 28.69572105682562 26.50515592637958 22.631818198701524 18-19 22.261498940128625 27.526405354586192 28.35668078971346 21.855414915571725 20-21 23.170244405525423 26.605475162645813 28.189238739440825 22.03504169238794 22-23 22.8335447612617 26.8550996944951 27.980737317931837 22.33061822631137 24-25 22.61147224965097 27.099785222201422 28.205447896735176 22.083294631412432 26-27 22.599491695743595 27.236903232077488 28.209478244835122 21.954126827343796 28-29 22.387762802513684 26.813255204961134 28.466762991211027 22.33221900131416 30-31 22.780870617753035 26.973496241354887 28.113901060803077 22.131732080089 32-33 22.5352393410126 26.878892588678927 28.264038628733314 22.321829441575158 34-35 22.376060202194587 27.179816529848072 28.496218534920686 21.94790473303666 36-37 22.720602979060686 26.949736579521737 27.988774608268884 22.340885833148693 38-39 22.423064026003576 26.896048791982768 28.235352325169583 22.445534856844073 40-41 22.523140287444168 26.789207148985355 28.247561768424024 22.440090795146457 42-43 22.612474186351378 26.781648084404413 28.14025924217068 22.465618487073527 44-45 22.448104343394274 27.076267088008127 27.952115692227242 22.523512876370365 46-47 22.868179369057582 26.82489089021341 27.389496701283594 22.917433039445413 48-49 22.6835741080992 26.923342798777416 27.48554879057296 22.907534302550424 50-51 22.53897799663747 27.141270788434756 27.575740118148296 22.744011096779474 52-53 22.744179377371207 27.17196572431506 27.585795783402922 22.498059114910806 54-55 22.715219889316653 27.160383155014582 27.319532628166115 22.804864327502646 56-57 22.881221130797233 27.42578792823494 27.01092957647438 22.682061364493443 58-59 22.539831047649823 27.613899137135878 27.41502966440475 22.431240150809543 60-61 22.858726851490584 27.813573881477087 26.909455721369547 22.418243545662783 62-63 22.64152376545674 27.998179882287346 26.913649561510983 22.446646790744936 64-65 22.721351900249402 27.712706345939065 26.97474425032313 22.591197503488402 66-67 22.843163957163586 27.530252504034436 26.900559090325093 22.726024448476885 68-69 22.74442707816527 27.461706703216436 27.04419696795673 22.74966925066156 70-71 22.783295924103715 27.223605976175726 27.098329510342587 22.894768589377968 72-73 22.82357363418698 27.305779383989442 26.981747467701865 22.888899514121707 74-75 22.709013305506218 27.448635603449272 26.99822920634778 22.84412188469673 76-77 22.859995247856553 27.347047422004206 26.921018686749278 22.87193864338996 78-79 22.745753803528142 27.365123023829348 26.883192086529263 23.00593108611325 80-81 22.776136713630954 27.412012293131433 26.917886006875086 22.89396498636253 82-83 22.840062504681466 27.330644863435833 27.00667883301123 22.822613798871476 84-85 22.896800117862714 27.347928712562304 26.904646138446196 22.850625031128782 86-87 22.74476014908027 27.36033216130536 27.049950397976264 22.844957291638103 88-89 22.82882498046138 27.317719124627114 26.970249451658024 22.883206443253485 90-91 22.821178381822996 27.415440401021403 26.97154345670037 22.791837760455234 92-93 22.847345251711673 27.376451344269253 26.977817631661942 22.798385772357133 94-95 22.705896462667297 27.34716200915851 27.064017814465906 22.882923713708287 96-97 22.81689691612847 27.4567804413116 27.08324675428232 22.64307588827761 98-99 23.9683332755523 29.38241933937927 27.23935826346927 19.40988912159916 100 22.860808610637605 30.42744828785836 21.048519672699012 25.663223428805026 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1498.0 1 1322.0 2 1674.5 3 2323.0 4 3122.5 5 5099.0 6 6635.5 7 7562.5 8 8266.0 9 8224.0 10 7581.0 11 6912.0 12 7624.5 13 10240.5 14 16582.0 15 25563.0 16 33014.5 17 37700.5 18 39124.0 19 36895.0 20 32298.5 21 27185.5 22 23639.0 23 23197.5 24 25787.5 25 31630.0 26 40344.0 27 50574.0 28 62090.5 29 76259.0 30 91144.5 31 105578.5 32 122630.0 33 140803.5 34 159359.0 35 176899.5 36 195555.0 37 212763.0 38 224813.5 39 236360.5 40 248475.0 41 258175.0 42 263293.5 43 269925.5 44 276861.5 45 283088.0 46 294122.5 47 306252.0 48 308700.5 49 308471.0 50 309171.0 51 299439.5 52 284597.0 53 267848.0 54 250128.5 55 233703.5 56 215279.0 57 194954.5 58 174981.0 59 152935.0 60 128119.0 61 104143.0 62 82424.0 63 63256.5 64 46773.5 65 34419.5 66 26033.5 67 19839.5 68 14820.0 69 10601.5 70 7328.5 71 4959.0 72 3162.0 73 1955.5 74 1217.5 75 769.5 76 507.0 77 331.5 78 211.5 79 145.5 80 110.0 81 75.0 82 53.0 83 36.0 84 21.0 85 14.5 86 11.0 87 8.0 88 5.5 89 4.5 90 3.5 91 2.5 92 1.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.5714496737527617E-4 7 0.0 8 0.0 9 0.0 10-11 0.0033500449863183876 12-13 3.571476531256277E-5 14-15 0.002542891290254469 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 111.0 20-21 385.0 22-23 889.0 24-25 2086.0 26-27 2716.0 28-29 4936.0 30-31 11808.0 32-33 14584.0 34-35 20794.0 36-37 30252.0 38-39 36454.0 40-41 38034.0 42-43 46450.0 44-45 55224.0 46-47 54054.0 48-49 48129.0 50-51 42792.0 52-53 41642.0 54-55 49225.0 56-57 55616.0 58-59 54355.0 60-61 56710.0 62-63 56574.0 64-65 59037.0 66-67 61828.0 68-69 50426.0 70-71 48647.0 72-73 47224.0 74-75 48506.0 76-77 47574.0 78-79 51935.0 80-81 53608.0 82-83 52163.0 84-85 52119.0 86-87 55890.0 88-89 60284.0 90-91 65352.0 92-93 69618.0 94-95 85878.0 96-97 250057.0 98-99 436333.0 100-101 4679607.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.09644577462664 #Duplication Level Percentage of deduplicated Percentage of total 1 90.24712800537586 77.69956962630633 2 7.023845441503844 12.094562563675886 3 1.5667426208661086 4.0467291330058615 4 0.541528171995239 1.8649460358248315 5 0.2537858707757662 1.092503073080608 6 0.12228043601770122 0.631674655733743 7 0.07236673016793338 0.43613627818533607 8 0.04362419383409678 0.3004710431119293 9 0.029689145839749898 0.2300516941398309 >10 0.09533775799196266 1.2963855497283916 >50 0.0028748081141249707 0.16605330983472286 >100 7.443130752973537E-4 0.10434663893958737 >500 2.6252242962803666E-5 0.013041497169332951 >1k 2.62521994079494E-5 0.02352890126365641 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.8571812250050214E-5 0.0 0.0 0.0 3 0.0 2.8571812250050214E-5 0.0 0.0 0.0 4 0.0 1.0000134287517575E-4 0.0 0.0 0.0 5 0.0 1.0000134287517575E-4 0.0 0.0 0.0 6 8.571543675015064E-5 1.0000134287517575E-4 0.0 0.0 0.0 7 8.571543675015064E-5 1.0000134287517575E-4 0.0 0.0 0.0 8 8.571543675015064E-5 1.1428724900020086E-4 0.0 0.0 0.0 9 8.571543675015064E-5 2.5714631025045194E-4 0.0 0.0 0.0 10-11 9.28583898126632E-5 2.5714631025045194E-4 0.0 7.1429530625125534E-6 0.0 12-13 1.0000134287517575E-4 2.5714631025045194E-4 0.0 1.4285906125025107E-5 7.1429530625125534E-6 14-15 1.1428724900020086E-4 3.7857651231316535E-4 0.0 2.8571812250050214E-5 3.571476531256277E-5 16-17 2.000026857503515E-4 3.857194653756779E-4 0.0 4.285771837507532E-5 5.714362450010043E-5 18-19 2.000026857503515E-4 4.285771837507532E-4 0.0 5.714362450010043E-5 5.714362450010043E-5 20-21 2.000026857503515E-4 4.7143490212582853E-4 0.0 5.714362450010043E-5 5.714362450010043E-5 22-23 2.000026857503515E-4 5.571503388759792E-4 0.0 5.714362450010043E-5 7.142953062512554E-5 24-25 2.000026857503515E-4 6.357228225636173E-4 0.0 5.714362450010043E-5 1.0000134287517575E-4 26-27 2.000026857503515E-4 6.7143758787618E-4 0.0 9.28583898126632E-5 1.1428724900020086E-4 28-29 2.000026857503515E-4 6.7143758787618E-4 0.0 2.642892633129645E-4 1.1428724900020086E-4 30-31 2.000026857503515E-4 8.142966491264312E-4 0.0 6.57151681751155E-4 1.1428724900020086E-4 32-33 2.000026857503515E-4 8.285825552514563E-4 0.0 0.001728594641128038 1.2857315512522597E-4 34-35 2.1428859187537662E-4 9.428698042516571E-4 0.0 0.003364330892443413 1.2857315512522597E-4 36-37 2.1428859187537662E-4 0.0010643000063143705 0.0 0.005614361107134867 1.2857315512522597E-4 38-39 2.1428859187537662E-4 0.0010857288655019082 0.0 0.008621544346452653 1.4285906125025108E-4 40-41 2.285744980004017E-4 0.0012143020206271341 0.0 0.012221592689958979 1.5714496737527617E-4 42-43 2.285744980004017E-4 0.0012571597390022096 0.0 0.015564494723214854 1.5714496737527617E-4 44-45 2.285744980004017E-4 0.0014214476594399982 0.0 0.019364545752471533 1.5714496737527617E-4 46-47 2.285744980004017E-4 0.0015428778615027116 0.0 0.02393603571247957 1.5714496737527617E-4 48-49 2.285744980004017E-4 0.0015428778615027116 0.0 0.028243236409174637 1.5714496737527617E-4 50-51 2.285744980004017E-4 0.0018214530309407012 0.0 0.03245043576299453 1.5714496737527617E-4 52-53 2.285744980004017E-4 0.0018285959840032137 0.0 0.036536204914751715 1.7857382656281384E-4 54-55 2.285744980004017E-4 0.0018285959840032137 0.0 0.04104340829719713 2.000026857503515E-4 56-57 2.285744980004017E-4 0.0018714537023782891 0.0 0.045522039867392505 2.000026857503515E-4 58-59 2.285744980004017E-4 0.0018714537023782891 0.0 0.05022210298252577 2.000026857503515E-4 60-61 2.5714631025045194E-4 0.001921454373815877 0.0 0.05469359159965862 2.000026857503515E-4 62-63 2.8571812250050216E-4 0.001978597998315977 0.0 0.05907936478004133 2.000026857503515E-4 64-65 2.8571812250050216E-4 0.002214315449378892 0.0 0.06330799299304876 2.000026857503515E-4 66-67 2.8571812250050216E-4 0.002242887261628942 0.0 0.06774376684486906 2.0714563881286407E-4 68-69 2.8571812250050216E-4 0.00232145974531658 0.0 0.07216525479056433 2.1428859187537662E-4 70-71 2.928610755630147E-4 0.0023500315575666303 0.0 0.07613673669332131 2.1428859187537662E-4 72-73 3.2857584087557745E-4 0.0023786033698166803 0.0 0.0795439253041398 2.5714631025045194E-4 74-75 3.2857584087557745E-4 0.0024214610881917557 0.0 0.08217967498420693 2.5714631025045194E-4 76-77 3.2857584087557745E-4 0.0025071765249419066 0.0 0.08482971057039909 2.5714631025045194E-4 78-79 3.2857584087557745E-4 0.002542891290254469 0.0 0.08661544883602723 2.5714631025045194E-4 80-81 3.2857584087557745E-4 0.002542891290254469 0.0 0.08720117098715326 2.7143221637547705E-4 82-83 3.2857584087557745E-4 0.002542891290254469 0.0 0.08764403407702903 3.1428993475055234E-4 84-85 3.2857584087557745E-4 0.002542891290254469 0.0 0.08786546562196693 3.1428993475055234E-4 86-87 3.2857584087557745E-4 0.0025857490086295446 0.0 0.08794403810565456 3.1428993475055234E-4 88 3.2857584087557745E-4 0.0027143221637547705 0.0 0.08794403810565456 3.1428993475055234E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9670 0.0 52.53912 1 CTTATAC 6875 0.0 44.364227 1 GTATCAA 17465 0.0 38.031025 1 TATACAC 9165 0.0 35.860825 3 TTATACA 9445 0.0 33.294678 2 TCAACGC 21150 0.0 30.855642 4 ATCAACG 21610 0.0 30.278463 3 TATCAAC 21950 0.0 30.083836 2 CAACGCA 21750 0.0 29.98703 5 AACGCAG 22325 0.0 29.233957 6 TACACAT 12425 0.0 26.453947 5 ACGCAGA 25520 0.0 25.52341 7 ACACATC 12355 0.0 24.89756 6 CGCAGAG 26525 0.0 24.57328 8 ACATCTC 12795 0.0 24.445562 8 GTGGTAT 4260 0.0 22.519287 1 ATACACA 15970 0.0 22.196354 4 GTACATG 25270 0.0 22.0457 1 CACATCT 14280 0.0 21.661783 7 TACATGG 25565 0.0 21.454765 2 >>END_MODULE