##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139510_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8796391 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.50073956466919 33.0 33.0 33.0 33.0 33.0 2 32.547615152623386 33.0 33.0 33.0 33.0 33.0 3 32.56993487442748 33.0 33.0 33.0 33.0 33.0 4 36.47326124998309 37.0 37.0 37.0 37.0 37.0 5 36.496361860221995 37.0 37.0 37.0 37.0 37.0 6 36.48329627457443 37.0 37.0 37.0 37.0 37.0 7 36.45951674953967 37.0 37.0 37.0 37.0 37.0 8 36.45340617532804 37.0 37.0 37.0 37.0 37.0 9 36.49873101366231 37.0 37.0 37.0 37.0 37.0 10-11 36.4177555886272 37.0 37.0 37.0 37.0 37.0 12-13 36.41972594215059 37.0 37.0 37.0 37.0 37.0 14-15 38.38845055887124 40.0 37.0 40.0 37.0 40.0 16-17 38.33085591579547 40.0 37.0 40.0 37.0 40.0 18-19 38.32832914089426 40.0 37.0 40.0 37.0 40.0 20-21 38.311338973711074 40.0 37.0 40.0 37.0 40.0 22-23 38.31115934383436 40.0 37.0 40.0 37.0 40.0 24-25 38.29796968428228 40.0 37.0 40.0 37.0 40.0 26-27 38.170448711647495 40.0 37.0 40.0 37.0 40.0 28-29 38.09773294848567 40.0 37.0 40.0 33.0 40.0 30-31 37.96241172672738 40.0 37.0 40.0 33.0 40.0 32-33 37.977549812410004 40.0 37.0 40.0 33.0 40.0 34-35 37.93720047112265 40.0 37.0 40.0 33.0 40.0 36-37 37.84641750126177 40.0 37.0 40.0 33.0 40.0 38-39 37.76473436315812 40.0 37.0 40.0 33.0 40.0 40-41 37.78446703351874 40.0 37.0 40.0 33.0 40.0 42-43 37.73126933084693 40.0 37.0 40.0 33.0 40.0 44-45 37.669906569384736 40.0 37.0 40.0 33.0 40.0 46-47 37.63522267231801 40.0 37.0 40.0 33.0 40.0 48-49 37.6188731533658 40.0 37.0 40.0 33.0 40.0 50-51 37.48357242386783 40.0 37.0 40.0 33.0 40.0 52-53 37.403166920723905 40.0 37.0 40.0 33.0 40.0 54-55 37.25919414718621 40.0 37.0 40.0 33.0 40.0 56-57 37.14485577784197 38.5 37.0 40.0 33.0 40.0 58-59 36.99885159604888 37.0 37.0 40.0 33.0 40.0 60-61 36.86864396866997 37.0 37.0 40.0 33.0 40.0 62-63 36.71940308406661 37.0 37.0 40.0 33.0 40.0 64-65 36.56718062904632 37.0 37.0 40.0 33.0 40.0 66-67 36.351457456091836 37.0 37.0 40.0 33.0 40.0 68-69 36.129940520043526 37.0 37.0 40.0 33.0 40.0 70-71 35.88292184220023 37.0 35.0 37.0 33.0 40.0 72-73 35.67774773132275 37.0 33.0 37.0 33.0 40.0 74-75 35.456953152850076 37.0 33.0 37.0 33.0 40.0 76-77 33.757961873859415 35.0 33.0 37.0 27.0 37.0 78-79 34.96228738571479 37.0 33.0 37.0 33.0 37.0 80-81 35.03647178746073 37.0 33.0 37.0 33.0 37.0 82-83 34.88872245192604 37.0 33.0 37.0 33.0 37.0 84-85 34.759431616988124 37.0 33.0 37.0 33.0 37.0 86-87 34.64599112286686 37.0 33.0 37.0 33.0 37.0 88-89 34.48081493725577 37.0 33.0 37.0 33.0 37.0 90-91 34.488024417736725 37.0 33.0 37.0 33.0 37.0 92-93 34.4215383210374 37.0 33.0 37.0 33.0 37.0 94-95 34.39836368474964 37.0 33.0 37.0 33.0 37.0 96-97 34.4057784919 37.0 33.0 37.0 33.0 37.0 98-99 34.404469354991065 37.0 33.0 37.0 33.0 37.0 100 34.421637231569285 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 7.0 20 77.0 21 470.0 22 1752.0 23 4864.0 24 10477.0 25 19941.0 26 33417.0 27 52604.0 28 76737.0 29 105774.0 30 142811.0 31 189191.0 32 251029.0 33 332717.0 34 455373.0 35 656776.0 36 1117616.0 37 2525853.0 38 2755191.0 39 63711.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.42479466863171 20.590069268180553 14.579877133701766 24.405258929485967 2 14.182395939425612 20.759229552210673 42.07058326534143 22.98779124302228 3 17.486569207758045 26.559324159192105 31.238834199161907 24.715272433887943 4 12.07963584156275 18.846740668985724 38.1483155989769 30.925307890474627 5 13.18274733353713 37.78997545698003 35.721854565127906 13.305422644354941 6 29.3952967015977 37.91885980369197 18.90134350721547 13.784499987494856 7 26.03845145128269 32.811274532930604 22.556193784473656 18.594080231313047 8 24.554945317915042 36.397859076523545 21.412599780978358 17.63459582458306 9 25.17747335242374 16.704714467558343 20.46601839322513 37.65179378679279 10-11 23.94245440855999 26.47857089627302 28.891558763093112 20.687415932073883 12-13 25.061593449130836 23.887287853312554 28.57700715861848 22.474111538938132 14-15 22.32680230011118 25.505891276597403 25.71372573116511 26.453580692126305 16-17 22.17135413830513 28.965242677366206 26.32618309031511 22.53722009401356 18-19 22.472716367428415 27.57447344030069 27.861642348549537 22.09116784372136 20-21 23.027741529554213 26.872837884333567 27.721350423787317 22.378070162324903 22-23 22.465471823915724 27.256261407328765 27.827876338033086 22.45039043072243 24-25 22.62203560562372 27.225325897249014 27.81930067216885 22.333337824958413 26-27 22.643557178630978 27.520921959012757 27.888155665096466 21.947365197259796 28-29 22.131704260373553 26.895771978945955 28.210002657729955 22.762521102950537 30-31 22.348265642873557 27.00348298106273 28.352513791961435 22.295737584102273 32-33 21.775118366292393 26.845956693725242 28.853376433510547 22.525548506471814 34-35 21.895591419338462 27.035023222713956 28.412393668614545 22.656991689333044 36-37 22.173214946725395 27.117250050123687 28.386875991675538 22.32265901147538 38-39 22.22919390048593 26.87391799018149 28.320389643810056 22.576498465522526 40-41 22.219934892901364 26.795082709866914 28.55542334289371 22.42955905433801 42-43 22.506565922279833 26.656500729884076 28.531138063629456 22.305795284206635 44-45 22.090131737565912 27.16108231531884 28.257682614584013 22.491103332531235 46-47 22.85420798774158 26.644119493970468 27.49911757503694 23.002554943251006 48-49 22.469834088607335 26.712268829558756 27.850779799374774 22.967117282459135 50-51 22.223998955224825 27.13306409509139 27.94277087496611 22.70016607471767 52-53 22.350409573283088 27.317796190050924 28.18228659487771 22.14950764178828 54-55 22.295060722375712 27.374320099751582 27.63924172041306 22.691377457459648 56-57 22.733596094785153 27.695000667002244 27.088997350625128 22.48240588758748 58-59 22.15849711593958 27.994298474687962 27.799219709882927 22.047984699489533 60-61 22.649301618161616 28.373587494451975 26.919428788023104 22.05768209936331 62-63 22.302514663945097 28.609017880174182 26.942666854946996 22.145800600933722 64-65 22.38487076994622 28.17445116345974 27.095364360644936 22.345313705949106 66-67 22.55937607538763 27.876206676658764 27.055097357747115 22.50931989020649 68-69 22.532392618394994 27.678426614756603 27.219871285005638 22.569309481842765 70-71 22.523296524609293 27.4311411840127 27.344807728727428 22.70075456265058 72-73 22.629076634008857 27.478526372299022 27.222809018923634 22.669587974768486 74-75 22.49218301590759 27.61480511380594 27.211589265448765 22.68142260483771 76-77 22.630192391637895 27.519244929881932 27.165220514814454 22.685342163665716 78-79 22.56131663470792 27.504286156892032 27.125950682918145 22.808446525481905 80-81 22.55383332219311 27.57912671878437 27.148660248324553 22.71837971069796 82-83 22.62711732425018 27.521542770626823 27.228059920870823 22.62327998425217 84-85 22.68391483426308 27.484074428134353 27.1635907289671 22.66842000863546 86-87 22.53656885792798 27.51743982808761 27.256450290554145 22.689541023430273 88-89 22.633580798937526 27.497504589524404 27.195995548264325 22.672919063273753 90-91 22.613550703007338 27.553745311328793 27.201293070581322 22.63141091508255 92-93 22.668167331423355 27.491734735545954 27.22601463444205 22.614083298588643 94-95 22.491236678701227 27.515703451608157 27.29820351913375 22.69485635055686 96-97 22.605312958422676 27.609474691453833 27.322402699553777 22.462809650569714 98-99 23.77284286892519 29.506384058283032 27.523544649006887 19.197228423784896 100 22.63469865419393 30.582706377171736 21.291872072890524 25.490722895743804 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1296.0 1 1198.0 2 1694.0 3 2425.5 4 3273.5 5 5415.0 6 7198.5 7 8269.0 8 8773.5 9 8419.5 10 7736.5 11 7107.0 12 7901.0 13 10742.5 14 17367.0 15 26783.0 16 35036.5 17 40424.5 18 41849.5 19 39699.5 20 35617.0 21 31154.0 22 28420.5 23 28964.5 24 32837.5 25 40683.0 26 52152.0 27 65707.0 28 81384.5 29 100087.5 30 119781.0 31 140005.0 32 163319.0 33 187346.5 34 211072.0 35 234526.5 36 259337.5 37 281240.0 38 296314.0 39 310246.0 40 324280.5 41 334275.0 42 339632.0 43 347125.0 44 354554.0 45 360370.0 46 365686.0 47 370933.0 48 399141.0 49 412639.0 50 395737.0 51 388337.0 52 382675.5 53 361102.0 54 326264.0 55 293103.5 56 264429.5 57 238091.0 58 211015.5 59 180388.0 60 148466.0 61 119614.5 62 93715.0 63 71272.5 64 52354.0 65 37989.5 66 28058.5 67 21250.0 68 16061.0 69 11633.0 70 8073.5 71 5561.0 72 3678.0 73 2307.5 74 1466.5 75 932.5 76 616.0 77 413.5 78 279.0 79 193.0 80 128.5 81 85.5 82 61.0 83 41.5 84 29.5 85 24.0 86 20.0 87 17.0 88 11.5 89 5.5 90 2.5 91 1.0 92 0.0 93 0.5 94 1.0 95 1.0 96 0.5 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.2505128523732063E-4 7 0.0 8 0.0 9 0.0 10-11 0.003461646941342194 12-13 1.1368298657938238E-5 14-15 0.0023589219715221843 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 96.0 20-21 459.0 22-23 1106.0 24-25 2435.0 26-27 3465.0 28-29 6222.0 30-31 15321.0 32-33 19597.0 34-35 27287.0 36-37 40963.0 38-39 47413.0 40-41 49914.0 42-43 58504.0 44-45 69607.0 46-47 67214.0 48-49 63877.0 50-51 58291.0 52-53 59575.0 54-55 78461.0 56-57 87069.0 58-59 85745.0 60-61 87579.0 62-63 87267.0 64-65 86414.0 66-67 94638.0 68-69 67786.0 70-71 63809.0 72-73 61116.0 74-75 62653.0 76-77 62160.0 78-79 66964.0 80-81 69176.0 82-83 66948.0 84-85 68228.0 86-87 71827.0 88-89 77557.0 90-91 82927.0 92-93 87950.0 94-95 107491.0 96-97 304474.0 98-99 537569.0 100-101 5739237.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.01557376652147 #Duplication Level Percentage of deduplicated Percentage of total 1 89.28082276026991 75.90260373311456 2 7.653182843648419 13.012794611857373 3 1.765027781420726 4.501645486540004 4 0.6220601788530151 2.1153921208997617 5 0.2708494401665868 1.1513210280051749 6 0.14037015412703138 0.7160189515682774 7 0.08599374466521818 0.5117565280131688 8 0.05118902743018164 0.3481491630021678 9 0.03279516541931797 0.2509289824402171 >10 0.0951183904884785 1.2497212679687084 >50 0.0019624391139058932 0.11407849027368094 >100 5.852496190580289E-4 0.09012851336851808 >500 2.141240528722391E-5 0.013179608549593984 >1k 2.141237284711187E-5 0.02228151439879078 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.410489597381472E-5 0.0 0.0 0.0 3 0.0 3.410489597381472E-5 0.0 0.0 0.0 4 0.0 5.684149328969119E-5 0.0 1.1368298657938238E-5 0.0 5 0.0 5.684149328969119E-5 0.0 1.1368298657938238E-5 0.0 6 0.0 5.684149328969119E-5 0.0 2.2736597315876476E-5 0.0 7 0.0 5.684149328969119E-5 0.0 2.2736597315876476E-5 0.0 8 0.0 5.684149328969119E-5 0.0 2.2736597315876476E-5 1.1368298657938238E-5 9 0.0 1.3641958389525887E-4 0.0 3.410489597381472E-5 3.410489597381472E-5 10-11 0.0 1.3641958389525887E-4 0.0 3.978904530278383E-5 3.410489597381472E-5 12-13 5.684149328969119E-6 1.3641958389525887E-4 0.0 6.820979194762942E-5 3.410489597381472E-5 14-15 1.1368298657938238E-5 1.9894522651391918E-4 0.0 1.0231468792144414E-4 3.410489597381472E-5 16-17 1.1368298657938238E-5 2.046293758428883E-4 0.0 1.1368298657938238E-4 3.410489597381472E-5 18-19 2.2736597315876476E-5 2.2736597315876477E-4 0.0 1.9894522651391918E-4 3.410489597381472E-5 20-21 4.547319463175295E-5 2.5578671980361036E-4 0.0 2.2736597315876477E-4 3.410489597381472E-5 22-23 5.684149328969119E-5 2.955757651063942E-4 0.0 2.5578671980361036E-4 4.547319463175295E-5 24-25 6.820979194762943E-5 3.524172583960854E-4 0.0 2.7283916779051773E-4 5.684149328969119E-5 26-27 7.957809060556767E-5 3.524172583960854E-4 0.0 3.126282130933016E-4 6.252564261866031E-5 28-29 8.52622399345368E-5 3.524172583960854E-4 0.0 4.6041609564649865E-4 6.820979194762943E-5 30-31 9.663053859247502E-5 3.524172583960854E-4 0.0 0.0010401993272013488 6.820979194762943E-5 32-33 1.0231468792144414E-4 3.524172583960854E-4 0.0 0.002245238984942802 6.820979194762943E-5 34-35 1.1368298657938238E-4 4.2631119967268395E-4 0.0 0.0038368007970541558 6.820979194762943E-5 36-37 1.2505128523732063E-4 5.002051409492825E-4 0.0 0.006349194800458506 6.820979194762943E-5 38-39 1.2505128523732063E-4 5.058892902782516E-4 0.0 0.009822210040458638 6.820979194762943E-5 40-41 1.2505128523732063E-4 5.684149328969119E-4 0.0 0.013630590090867948 7.957809060556767E-5 42-43 1.2505128523732063E-4 5.740990822258811E-4 0.0 0.017365076200000662 7.957809060556767E-5 44-45 1.3641958389525887E-4 6.082039781996958E-4 0.0 0.021730502884648943 8.52622399345368E-5 46-47 1.3641958389525887E-4 6.423088741735106E-4 0.0 0.02607319297198135 9.663053859247502E-5 48-49 1.3641958389525887E-4 6.479930235024796E-4 0.0 0.03000662430762798 1.2505128523732063E-4 50-51 1.3641958389525887E-4 7.218869647790782E-4 0.0 0.033905950747300795 1.2505128523732063E-4 52-53 1.3641958389525887E-4 7.275711141080472E-4 0.0 0.03795874921885578 1.5347203188216622E-4 54-55 1.3641958389525887E-4 7.275711141080472E-4 0.0 0.042068389183700455 1.818927785270118E-4 56-57 1.5347203188216622E-4 7.275711141080472E-4 0.0 0.0458881375327677 1.818927785270118E-4 58-59 1.705244798690736E-4 7.275711141080472E-4 0.0 0.05010577633486279 1.818927785270118E-4 60-61 1.705244798690736E-4 7.332552634370164E-4 0.0 0.054096049163799106 1.818927785270118E-4 62-63 1.705244798690736E-4 7.446235620949546E-4 0.0 0.05812611103803822 1.818927785270118E-4 64-65 1.762086291980427E-4 9.435687886088738E-4 0.0 0.062070910672342786 1.818927785270118E-4 66-67 1.818927785270118E-4 9.54937087266812E-4 0.0 0.06627718117577994 1.818927785270118E-4 68-69 1.818927785270118E-4 0.001000410281898565 0.0 0.07061987126311234 1.818927785270118E-4 70-71 1.818927785270118E-4 0.0010174627298854724 0.0 0.07470109048131217 1.9326107718495005E-4 72-73 1.818927785270118E-4 0.0010345151778723798 0.0 0.07781600431358723 2.1599767450082653E-4 74-75 1.818927785270118E-4 0.001091356671162071 0.0 0.0804761861995448 2.1599767450082653E-4 76-77 1.818927785270118E-4 0.0011766189110966078 0.0 0.08323868277342378 2.2168182382979566E-4 78-79 1.818927785270118E-4 0.0012050396577414533 1.1368298657938238E-5 0.0849496117214435 2.2736597315876477E-4 80-81 1.818927785270118E-4 0.0012107238070704226 1.1368298657938238E-5 0.08558055229695906 2.2736597315876477E-4 82-83 1.818927785270118E-4 0.0012164079563993916 1.1368298657938238E-5 0.08615465137918493 2.2736597315876477E-4 84-85 1.9326107718495005E-4 0.0012164079563993916 1.1368298657938238E-5 0.08635359660569886 2.2736597315876477E-4 86-87 1.9326107718495005E-4 0.0012732494496890828 1.1368298657938238E-5 0.08645022714429135 2.38734271816703E-4 88 1.9326107718495005E-4 0.001284617748347021 1.1368298657938238E-5 0.08646727959227825 2.5010257047464125E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 12370 0.0 58.217804 1 GGTATCA 10655 0.0 48.191715 1 TATACAC 16415 0.0 46.156162 3 TTATACA 16000 0.0 45.861893 2 GTATCAA 18995 0.0 36.99305 1 TACACAT 23850 0.0 31.680082 5 TCAACGC 22670 0.0 30.451395 4 ATCAACG 23180 0.0 29.781075 3 CAACGCA 23395 0.0 29.509233 5 TATCAAC 24030 0.0 28.922709 2 AACGCAG 24135 0.0 28.622108 6 ACACATC 25590 0.0 28.393572 6 ATACACA 28240 0.0 27.946024 4 ACATCTC 26460 0.0 27.7829 8 CACATCT 28155 0.0 25.700888 7 ACGCAGA 27460 0.0 25.125359 7 CGCAGAG 28445 0.0 24.256 8 CATCTCC 30685 0.0 23.722195 9 GTACATG 27740 0.0 22.120495 1 TACATGG 28405 0.0 21.212576 2 >>END_MODULE