##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139508_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8429410 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.51497186635838 33.0 33.0 33.0 33.0 33.0 2 32.55407246770533 33.0 33.0 33.0 33.0 33.0 3 32.57189435559547 33.0 33.0 33.0 33.0 33.0 4 36.483069514948255 37.0 37.0 37.0 37.0 37.0 5 36.51250834874564 37.0 37.0 37.0 37.0 37.0 6 36.50357510193477 37.0 37.0 37.0 37.0 37.0 7 36.48177369471885 37.0 37.0 37.0 37.0 37.0 8 36.46981022396585 37.0 37.0 37.0 37.0 37.0 9 36.50511376241042 37.0 37.0 37.0 37.0 37.0 10-11 36.43149384120596 37.0 37.0 37.0 37.0 37.0 12-13 36.435312376548296 37.0 37.0 37.0 37.0 37.0 14-15 38.397483038551925 40.0 37.0 40.0 37.0 40.0 16-17 38.350966971591134 40.0 37.0 40.0 37.0 40.0 18-19 38.373865193412115 40.0 37.0 40.0 37.0 40.0 20-21 38.37967899461012 40.0 37.0 40.0 37.0 40.0 22-23 38.38356675862122 40.0 37.0 40.0 37.0 40.0 24-25 38.367826674084945 40.0 37.0 40.0 37.0 40.0 26-27 38.25336853673022 40.0 37.0 40.0 37.0 40.0 28-29 38.188697645595255 40.0 37.0 40.0 37.0 40.0 30-31 38.03791282648683 40.0 37.0 40.0 33.0 40.0 32-33 38.04198073945908 40.0 37.0 40.0 33.0 40.0 34-35 38.00371417492125 40.0 37.0 40.0 33.0 40.0 36-37 37.925364472066065 40.0 37.0 40.0 33.0 40.0 38-39 37.8756715889983 40.0 37.0 40.0 33.0 40.0 40-41 37.89738226910002 40.0 37.0 40.0 33.0 40.0 42-43 37.842709957265086 40.0 37.0 40.0 33.0 40.0 44-45 37.785642757799685 40.0 37.0 40.0 33.0 40.0 46-47 37.7525818877609 40.0 37.0 40.0 33.0 40.0 48-49 37.73854596467378 40.0 37.0 40.0 33.0 40.0 50-51 37.657379776771194 40.0 37.0 40.0 33.0 40.0 52-53 37.56719594188171 40.0 37.0 40.0 33.0 40.0 54-55 37.43515954591228 40.0 37.0 40.0 33.0 40.0 56-57 37.337596994921725 40.0 37.0 40.0 33.0 40.0 58-59 37.18773551564246 37.0 37.0 40.0 33.0 40.0 60-61 37.084478554250815 37.0 37.0 40.0 33.0 40.0 62-63 36.93675059855485 37.0 37.0 40.0 33.0 40.0 64-65 36.775918782641924 37.0 37.0 40.0 33.0 40.0 66-67 36.56159930916427 37.0 37.0 40.0 33.0 40.0 68-69 36.34424282147469 37.0 37.0 40.0 33.0 40.0 70-71 36.098718168973086 37.0 37.0 38.5 33.0 40.0 72-73 35.89436310286307 37.0 37.0 37.0 33.0 40.0 74-75 35.67366690501609 37.0 33.0 37.0 33.0 40.0 76-77 33.984590367465024 35.0 33.0 37.0 27.0 37.0 78-79 35.1462059589039 37.0 33.0 37.0 33.0 37.0 80-81 35.20194635246388 37.0 33.0 37.0 33.0 37.0 82-83 35.042556821375356 37.0 33.0 37.0 33.0 37.0 84-85 34.90686551771313 37.0 33.0 37.0 33.0 37.0 86-87 34.788224426351604 37.0 33.0 37.0 33.0 37.0 88-89 34.623601558068 37.0 33.0 37.0 33.0 37.0 90-91 34.628249801253205 37.0 33.0 37.0 33.0 37.0 92-93 34.5619273714604 37.0 33.0 37.0 33.0 37.0 94-95 34.53689317998025 37.0 33.0 37.0 33.0 37.0 96-97 34.541202674173725 37.0 33.0 37.0 33.0 37.0 98-99 34.52584222615167 37.0 33.0 37.0 33.0 37.0 100 34.54303479476743 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 6.0 19 30.0 20 74.0 21 376.0 22 1246.0 23 3546.0 24 8028.0 25 15593.0 26 27193.0 27 43613.0 28 64200.0 29 91480.0 30 125317.0 31 167987.0 32 224284.0 33 302162.0 34 414735.0 35 598523.0 36 1025229.0 37 2374269.0 38 2863760.0 39 77757.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.63977075501133 20.77411111809723 14.631581569765856 22.95453655712559 2 14.269551486996123 21.370226385951092 42.37786511748746 21.98235700956532 3 17.66540006951851 27.75760106579227 30.94834632554354 23.62865253914568 4 11.922423989342077 18.958029091003997 39.38204453217959 29.73750238747433 5 12.652059871331446 38.87555594045135 35.473324942077795 12.99905924613941 6 28.263660010349508 38.642209527479224 19.54328583363011 13.550844628541153 7 25.768268479051322 33.66851298014926 23.122270716455837 17.440947824343578 8 24.505012806352994 36.3951213667386 21.56540018815077 17.534465638757634 9 26.073011041104895 16.674796931220573 21.084678524356985 36.16751350331755 10-11 23.882599587179367 27.103726389265642 28.886132295862023 20.127541727692964 12-13 25.18216287337888 24.859512656109736 28.919056820960243 21.03926764955115 14-15 22.256749005392564 26.043897378222503 26.91034326487492 24.78901035151002 16-17 21.249761252566906 29.38939973260287 27.428005044243903 21.932833970586316 18-19 21.342021564973113 28.16979480177142 29.519402900084344 20.968780733171126 20-21 22.654432746598218 27.00132290338321 29.33934791101443 21.004896439004142 22-23 22.176924856116777 27.369753791944795 29.121914153598155 21.331407198340273 24-25 21.781925496164472 27.64532201852613 29.296536595550805 21.276215889758593 26-27 21.698740938074877 27.814582232231594 29.215334992615137 21.27134183707839 28-29 21.37945679122018 27.73801049966987 29.429039403541697 21.453493305568255 30-31 22.068231646053153 27.56679790789194 29.205149449622642 21.15982099643227 32-33 21.347558848839416 28.00295614104471 29.224990970523407 21.424494039592467 34-35 21.63381393944233 27.938942256502024 29.332102999529848 21.0951408045258 36-37 21.50089764841772 27.918136670358614 29.108980536603603 21.471985144620067 38-39 21.449967860355702 27.61381693044002 29.362891156169376 21.573324053034902 40-41 21.62063072087152 27.518597098361226 29.35406897413667 21.506703206630583 42-43 21.731266388261606 27.504089103631703 29.13282653763035 21.631817970476337 44-45 21.63430276985415 27.863039720776445 28.780746030717726 21.721911478651688 46-47 21.937213476459366 27.704524086551448 28.27918257811074 22.079079858878448 48-49 21.858659584079977 27.80106862609959 28.251632721027313 22.08863906879312 50-51 21.776554623890224 27.94632968309093 28.28249543606054 21.994620256958306 52-53 21.86054018466377 27.980913603052798 28.360142285062306 21.798403927221127 54-55 21.87153920995601 28.006284090925927 28.06400485885179 22.058171840266276 56-57 22.08960616534976 28.1555865161317 27.773021446266284 21.98178587225226 58-59 21.745828277789236 28.351066870483276 28.125169616553542 21.777935235173945 60-61 22.052620900403195 28.541298202092836 27.69968937786024 21.706391519643738 62-63 21.86673430269529 28.6153900131913 27.73775763665646 21.780118047456952 64-65 21.886354044217153 28.39699202831898 27.78952180669879 21.927132120765073 66-67 22.004601430639553 28.26984880867028 27.68255861050558 22.04299115018459 68-69 22.025503505087496 28.193518207842068 27.778044071881702 22.002934215188738 70-71 22.002379750108766 27.986001058831544 27.869613456595772 22.14200573446392 72-73 22.041508034839303 27.983371027920118 27.825192863045263 22.14992807419532 74-75 21.989136627904905 28.091058647519446 27.755830130918106 22.163974593657542 76-77 22.000943460034872 28.037085225673724 27.733511220713247 22.228460093578153 78-79 22.053907691805964 27.949069644332813 27.744375964904417 22.25264669895681 80-81 22.002648849427654 28.059228561809054 27.71525656431021 22.22286602445308 82-83 22.150495877777175 27.95079638809655 27.792460191022318 22.106247543103954 84-85 22.207507470952322 27.87261054568836 27.738294604101295 22.181587379258023 86-87 22.068302236922076 27.963838871498435 27.783071333446372 22.18478755813311 88-89 22.201159400919344 27.830421969552393 27.738706737284435 22.229711892243824 90-91 22.191820303537263 27.795967294232366 27.810151205342976 22.202061196887392 92-93 22.183380309574048 27.760612559488973 27.866125532972685 22.189881597964295 94-95 22.091190297944692 27.749268880394485 27.882655535070565 22.276885286590257 96-97 22.150019690602566 27.929918891825388 27.913978880224878 22.00608253734717 98-99 23.287742656950403 29.78092614550107 28.177746042892537 18.75358515465599 100 22.15532863474408 30.797548565388116 21.946612143685577 25.10051065618223 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1506.0 1 1445.0 2 2225.5 3 3290.0 4 4687.5 5 7915.5 6 10388.0 7 11883.5 8 12792.5 9 12562.5 10 11789.5 11 11102.5 12 12485.5 13 17046.0 14 27680.5 15 42503.5 16 54945.0 17 62522.0 18 63724.0 19 58911.5 20 50920.5 21 42449.0 22 36488.5 23 35726.5 24 40064.5 25 49161.5 26 62759.5 27 78176.5 28 94886.5 29 114992.5 30 136677.0 31 159009.0 32 183482.5 33 207827.5 34 231862.0 35 255040.0 36 279310.0 37 300283.5 38 313639.0 39 325742.0 40 336600.0 41 341817.5 42 342446.0 43 346953.5 44 352274.0 45 356442.0 46 363561.5 47 371039.0 48 368335.0 49 358591.0 50 351853.5 51 336565.5 52 313160.0 53 289180.5 54 264344.0 55 239937.0 56 215725.0 57 189914.5 58 163935.0 59 139357.0 60 115242.5 61 92310.5 62 72319.0 63 55531.0 64 41084.5 65 29693.0 66 21521.5 67 15793.5 68 11597.0 69 8024.0 70 5330.5 71 3643.5 72 2434.0 73 1612.5 74 1111.5 75 744.5 76 476.5 77 289.5 78 202.0 79 149.0 80 111.5 81 79.5 82 55.5 83 37.5 84 23.5 85 16.5 86 13.0 87 10.0 88 8.5 89 6.5 90 4.0 91 3.0 92 2.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 2.847174357398679E-4 7 0.0 8 0.0 9 0.0 10-11 0.0038614802222219588 12-13 3.5589679467483486E-5 14-15 0.0024319614302780387 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 135.0 20-21 450.0 22-23 1026.0 24-25 2656.0 26-27 3595.0 28-29 6740.0 30-31 15542.0 32-33 20056.0 34-35 28787.0 36-37 42989.0 38-39 52801.0 40-41 55152.0 42-43 67985.0 44-45 82468.0 46-47 79646.0 48-49 70782.0 50-51 61874.0 52-53 59239.0 54-55 67198.0 56-57 73783.0 58-59 73755.0 60-61 77144.0 62-63 75685.0 64-65 77777.0 66-67 84576.0 68-69 74611.0 70-71 73955.0 72-73 70036.0 74-75 70291.0 76-77 71174.0 78-79 76686.0 80-81 78325.0 82-83 76039.0 84-85 75951.0 86-87 80126.0 88-89 85983.0 90-91 92537.0 92-93 94435.0 94-95 105357.0 96-97 286956.0 98-99 500598.0 100-101 5334509.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.49980972185543 #Duplication Level Percentage of deduplicated Percentage of total 1 88.85804377318843 75.08487791090722 2 7.834744013029085 13.240687566408074 3 1.8981548174528164 4.811811626921586 4 0.7043235237559005 2.3806081496000124 5 0.29499321432331826 1.2463435239779455 6 0.1455135652163278 0.7377521143637101 7 0.08061317532087077 0.4768258582981707 8 0.047985091595187615 0.3243784887423326 9 0.03714068741206787 0.2824542917332782 >10 0.09645347506824299 1.229653216064859 >50 0.001465406799344721 0.08247974698335321 >100 5.471501855738824E-4 0.08723948257081504 >500 2.2106652838205812E-5 0.014888023428571585 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.1863226489161162E-5 0.0 0.0 0.0 3 0.0 1.1863226489161162E-5 0.0 0.0 0.0 4 0.0 3.558967946748349E-5 0.0 0.0 0.0 5 0.0 3.558967946748349E-5 0.0 0.0 0.0 6 2.3726452978322325E-5 3.558967946748349E-5 0.0 0.0 0.0 7 2.3726452978322325E-5 4.745290595664465E-5 0.0 0.0 0.0 8 2.3726452978322325E-5 4.745290595664465E-5 0.0 0.0 0.0 9 2.3726452978322325E-5 1.0676903840245047E-4 0.0 0.0 0.0 10-11 2.3726452978322325E-5 1.0676903840245047E-4 0.0 0.0 0.0 12-13 2.9658066222902907E-5 1.0676903840245047E-4 0.0 0.0 0.0 14-15 5.9316132445805814E-5 1.1863226489161163E-4 0.0 0.0 0.0 16-17 1.0676903840245047E-4 1.304954913807728E-4 0.0 0.0 0.0 18-19 1.0676903840245047E-4 1.304954913807728E-4 0.0 0.0 0.0 20-21 1.1270065164703104E-4 1.5422194435909511E-4 0.0 0.0 0.0 22-23 1.304954913807728E-4 1.7794839733741746E-4 0.0 1.1863226489161162E-5 0.0 24-25 1.304954913807728E-4 2.3726452978322326E-4 0.0 1.7794839733741743E-5 0.0 26-27 1.304954913807728E-4 2.491277562723844E-4 0.0 5.9316132445805814E-5 5.931613244580581E-6 28-29 1.304954913807728E-4 2.491277562723844E-4 0.0 2.609909827615456E-4 1.1863226489161162E-5 30-31 1.304954913807728E-4 3.0844388871819023E-4 0.0 9.016052131762483E-4 1.1863226489161162E-5 32-33 1.3642710462535338E-4 3.0844388871819023E-4 0.0 0.0023311240051201686 1.1863226489161162E-5 34-35 1.4235871786993397E-4 3.558967946748349E-4 0.0 0.004247035083119697 1.1863226489161162E-5 36-37 1.4235871786993397E-4 4.152129271206407E-4 0.0 0.007254362998122051 1.1863226489161162E-5 38-39 1.4235871786993397E-4 4.508026065881242E-4 0.0 0.011969995527563613 1.1863226489161162E-5 40-41 1.5422194435909511E-4 4.863922860556077E-4 0.0 0.016922892586788398 1.7794839733741743E-5 42-43 1.5422194435909511E-4 4.923238993001883E-4 0.0 0.021585140597028735 2.3726452978322325E-5 44-45 1.5422194435909511E-4 5.51640031745994E-4 0.0 0.026567695722476425 2.3726452978322325E-5 46-47 1.5422194435909511E-4 6.050245509472193E-4 0.0 0.032321360569719584 2.3726452978322325E-5 48-49 1.5422194435909511E-4 6.109561641917999E-4 0.0 0.03803943573749527 2.3726452978322325E-5 50-51 1.8388001058199804E-4 6.52477456903864E-4 0.0 0.043852416717184234 2.3726452978322325E-5 52-53 1.898116238265786E-4 6.643406833930251E-4 0.0 0.0495764234982045 3.558967946748349E-5 54-55 1.898116238265786E-4 6.702722966376057E-4 0.0 0.055063165749441534 3.558967946748349E-5 56-57 1.898116238265786E-4 6.880671363713475E-4 0.0 0.06033043831062909 3.558967946748349E-5 58-59 1.898116238265786E-4 7.177252025942504E-4 0.0 0.06523588246389724 3.558967946748349E-5 60-61 2.1353807680490094E-4 7.355200423279922E-4 0.0 0.07036672792045943 3.558967946748349E-5 62-63 2.491277562723844E-4 7.473832688171532E-4 0.0 0.07508829206314557 3.558967946748349E-5 64-65 2.491277562723844E-4 7.829729482846367E-4 0.0 0.08002932589588121 3.558967946748349E-5 66-67 2.491277562723844E-4 7.889045615292173E-4 0.0 0.0850711971537747 4.745290595664465E-5 68-69 2.491277562723844E-4 8.126310145075397E-4 0.0 0.09049269165932136 4.745290595664465E-5 70-71 2.491277562723844E-4 8.185626277521203E-4 0.0 0.09545152033179072 4.745290595664465E-5 72-73 3.26238728451932E-4 8.244942409967008E-4 0.0 0.09937824829970307 4.745290595664465E-5 74-75 3.3217034169651257E-4 8.304258542412814E-4 0.0 0.10213051684518845 4.745290595664465E-5 76-77 3.3217034169651257E-4 8.541523072196038E-4 0.0 0.10501921249529919 4.745290595664465E-5 78-79 3.3217034169651257E-4 8.660155337087649E-4 0.0 0.1069469867997879 4.745290595664465E-5 80-81 3.3217034169651257E-4 8.660155337087649E-4 0.0 0.1076172590964255 5.9316132445805814E-5 82-83 3.3810195494109315E-4 8.660155337087649E-4 0.0 0.10810958299572568 5.9316132445805814E-5 84-85 3.4403356818567374E-4 8.660155337087649E-4 0.0 0.10834091591226433 5.9316132445805814E-5 86-87 3.499651814302543E-4 8.660155337087649E-4 0.0 0.10844175333742219 5.9316132445805814E-5 88 3.558967946748349E-4 9.016052131762484E-4 0.0 0.10844175333742219 7.117935893496698E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15740 0.0 53.776497 1 CTTATAC 7855 0.0 37.820335 1 GTATCAA 28710 0.0 37.327793 1 TATACAC 10855 0.0 30.24875 3 ATCAACG 35885 0.0 29.593462 3 TCAACGC 36000 0.0 29.464588 4 TATCAAC 36695 0.0 29.020838 2 CAACGCA 36795 0.0 28.818193 5 TTATACA 10890 0.0 28.405304 2 AACGCAG 37665 0.0 28.174984 6 ACGCAGA 42705 0.0 24.839905 7 TGGTATC 6185 0.0 24.8018 2 GTGGTAT 6460 0.0 24.530987 1 CGCAGAG 43305 0.0 24.505648 8 GTACATG 44670 0.0 22.108488 1 TACATGG 44670 0.0 21.805761 2 GCAGAGT 48985 0.0 21.561615 9 ACATCTC 13830 0.0 21.391111 8 ACACATC 14040 0.0 21.16134 6 ACATGGG 45420 0.0 20.943277 3 >>END_MODULE