##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139507_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9377788 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.51329684569538 33.0 33.0 33.0 33.0 33.0 2 32.54802945001529 33.0 33.0 33.0 33.0 33.0 3 32.56960735303464 33.0 33.0 33.0 33.0 33.0 4 36.475016496427514 37.0 37.0 37.0 37.0 37.0 5 36.49834193308699 37.0 37.0 37.0 37.0 37.0 6 36.48894920635868 37.0 37.0 37.0 37.0 37.0 7 36.46700064023627 37.0 37.0 37.0 37.0 37.0 8 36.45900248544753 37.0 37.0 37.0 37.0 37.0 9 36.495957468861526 37.0 37.0 37.0 37.0 37.0 10-11 36.41688349107487 37.0 37.0 37.0 37.0 37.0 12-13 36.420388582040886 37.0 37.0 37.0 37.0 37.0 14-15 38.40562475927159 40.0 37.0 40.0 37.0 40.0 16-17 38.36026395563645 40.0 37.0 40.0 37.0 40.0 18-19 38.35546063741258 40.0 37.0 40.0 37.0 40.0 20-21 38.3514096143485 40.0 37.0 40.0 37.0 40.0 22-23 38.353140208650984 40.0 37.0 40.0 37.0 40.0 24-25 38.33952677827792 40.0 37.0 40.0 37.0 40.0 26-27 38.23180759607439 40.0 37.0 40.0 37.0 40.0 28-29 38.16741776040999 40.0 37.0 40.0 37.0 40.0 30-31 38.034031156761415 40.0 37.0 40.0 33.0 40.0 32-33 38.043495214781274 40.0 37.0 40.0 33.0 40.0 34-35 38.00699418237783 40.0 37.0 40.0 33.0 40.0 36-37 37.9299131521059 40.0 37.0 40.0 33.0 40.0 38-39 37.88015926654175 40.0 37.0 40.0 33.0 40.0 40-41 37.88368852541828 40.0 37.0 40.0 33.0 40.0 42-43 37.82200715460996 40.0 37.0 40.0 33.0 40.0 44-45 37.760413415802006 40.0 37.0 40.0 33.0 40.0 46-47 37.72358505733651 40.0 37.0 40.0 33.0 40.0 48-49 37.69992996982895 40.0 37.0 40.0 33.0 40.0 50-51 37.61837400840555 40.0 37.0 40.0 33.0 40.0 52-53 37.51143212431989 40.0 37.0 40.0 33.0 40.0 54-55 37.35590424483722 40.0 37.0 40.0 33.0 40.0 56-57 37.251643651898874 38.5 37.0 40.0 33.0 40.0 58-59 37.082983336205416 37.0 37.0 40.0 33.0 40.0 60-61 36.96592414503198 37.0 37.0 40.0 33.0 40.0 62-63 36.7968260196808 37.0 37.0 40.0 33.0 40.0 64-65 36.616446855234514 37.0 37.0 40.0 33.0 40.0 66-67 36.382475768329066 37.0 37.0 40.0 33.0 40.0 68-69 36.15256459705559 37.0 37.0 40.0 33.0 40.0 70-71 35.89663575474265 37.0 35.0 37.0 33.0 40.0 72-73 35.68480853953645 37.0 33.0 37.0 33.0 40.0 74-75 35.46158632682943 37.0 33.0 37.0 33.0 40.0 76-77 33.76469437436504 35.0 33.0 37.0 27.0 37.0 78-79 34.95636427127536 37.0 33.0 37.0 33.0 37.0 80-81 35.024734076096514 37.0 33.0 37.0 33.0 37.0 82-83 34.87258612610668 37.0 33.0 37.0 33.0 37.0 84-85 34.74236888328335 37.0 33.0 37.0 33.0 37.0 86-87 34.624096014880855 37.0 33.0 37.0 33.0 37.0 88-89 34.45768458308421 37.0 33.0 37.0 30.0 37.0 90-91 34.460774185803515 37.0 33.0 37.0 33.0 37.0 92-93 34.390743400191 37.0 33.0 37.0 33.0 37.0 94-95 34.36508895841554 37.0 33.0 37.0 33.0 37.0 96-97 34.372731288829016 37.0 33.0 37.0 33.0 37.0 98-99 34.375659852120336 37.0 33.0 37.0 33.0 37.0 100 34.38918792619895 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 2.0 19 9.0 20 73.0 21 374.0 22 1472.0 23 4079.0 24 9647.0 25 19017.0 26 33251.0 27 52792.0 28 77332.0 29 110129.0 30 148822.0 31 198855.0 32 263662.0 33 350834.0 34 482263.0 35 694774.0 36 1188585.0 37 2709536.0 38 2971913.0 39 60365.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.63687641477926 20.3051721791962 14.448300601378492 23.609650804646044 2 14.620644015411738 21.074447407000456 41.616786389284975 22.688122188302827 3 18.00773274038611 26.355810133477103 30.460520114124996 25.17593701201179 4 12.43760255616783 18.32005585965475 39.113680113050115 30.128661471127305 5 13.4258526637625 37.93060794293921 35.50743522886207 13.136104164436219 6 29.83833473451903 37.982241410859636 19.020797263998315 13.158626590623019 7 26.71277064484717 32.655504688312426 23.152058886381308 17.479665780459104 8 24.56193294196883 36.683138923592644 21.044067108362867 17.71086102607566 9 25.824832039282615 16.8728702333642 21.06316542877702 36.239132298576166 10-11 24.328040974463157 26.703249459967825 28.885041835198173 20.083667730370852 12-13 25.26083319572976 24.267896111283 28.85290230331055 21.618368389676686 14-15 22.350466872388214 25.62130084443585 26.48248945288288 25.545742830293054 16-17 21.881578043777488 28.733631001255304 27.16730747165536 22.21748348331184 18-19 21.941917432980997 27.947240863197166 28.755261901847216 21.35557980197462 20-21 22.8072964853529 27.069585081656673 28.647901436152445 21.475216996837982 22-23 22.542569902942645 27.021573158805705 28.43399172223745 22.001865216014195 24-25 22.273124586353852 27.1874195039926 28.51312441569565 22.026331493957898 26-27 22.188701139052974 27.345065131570102 28.445101257095747 22.02113247228118 28-29 22.142085162637766 27.332604635644397 28.483847011482062 22.041463190235778 30-31 22.404745913886178 27.227995871492872 28.351734921001576 22.015523293619374 32-33 22.196441078988983 27.382655013803873 28.30434158196197 22.116562325245166 34-35 22.363286394532338 27.370352643638913 28.304680605593973 21.961680356234776 36-37 22.375789061415126 27.29109406914721 28.216482597119636 22.116634272318027 38-39 22.237203600984127 27.430531012749 28.311805867230465 22.02045951903641 40-41 22.419814845304064 27.335192842233386 28.181426425948615 22.06356588651394 42-43 22.316416261628543 27.4176242045464 27.995084176287822 22.27087535753724 44-45 22.4385190776821 27.48798741311568 27.82943977604402 22.244053733158207 46-47 22.46096872890506 27.514826474092025 27.570197502524625 22.45400729447829 48-49 22.446616558923335 27.561195041302998 27.57906046033916 22.413127939434503 50-51 22.45297703851637 27.680155405535533 27.458734540848706 22.40813301509939 52-53 22.60204856030133 27.600419269366043 27.368017300434943 22.429514869897684 54-55 22.580572835560485 27.517269813575247 27.41707749142341 22.485079859440862 56-57 22.57958856488972 27.604149874057565 27.390271609332263 22.425989951720453 58-59 22.510473223324308 27.638244999986817 27.400058498930292 22.451223277758587 60-61 22.58960791987247 27.651531981894284 27.36619646626667 22.39266363196658 62-63 22.55741261381429 27.71228390870663 27.339008055499075 22.391295421980004 64-65 22.56192249952714 27.619003586724933 27.3273966072355 22.49167730651243 66-67 22.636084281359732 27.66140696817061 27.17860092302506 22.5239078274446 68-69 22.540889527903246 27.653672320805445 27.263380706872876 22.542057444418436 70-71 22.53743329339509 27.4652607162147 27.346276287351305 22.6510297030389 72-73 22.574024877327314 27.520085967169166 27.276889053436758 22.629000102066755 74-75 22.490614524624856 27.657482105091617 27.236799890582613 22.615103479700917 76-77 22.620639613640954 27.584441666573507 27.175665801722936 22.619252918062603 78-79 22.510474021784884 27.569765299293252 27.152004924127716 22.767755754794152 80-81 22.51982461560162 27.642245279888904 27.188319196426352 22.64961090808312 82-83 22.585736006915354 27.588935855912794 27.265631805628544 22.559696331543307 84-85 22.626477603188263 27.583153608833843 27.20050559081832 22.589863197159577 86-87 22.509166494665784 27.564775298451533 27.295224055390165 22.630834151492515 88-89 22.580298333679927 27.599475015493706 27.220625523749124 22.599601127077236 90-91 22.590725121486464 27.64082985652454 27.212467939829455 22.555977082159544 92-93 22.59405149749153 27.596981049076764 27.252216106456245 22.55675134697546 94-95 22.472910059465644 27.582878531417805 27.33862109255044 22.60559031656611 96-97 22.5898784953653 27.711698000329527 27.334430493339273 22.3639930109659 98-99 23.709342736976094 29.60898604800989 27.55555070909348 19.12612050592054 100 22.58004089008123 30.668518390112503 21.35270528857714 25.39873543122913 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1384.0 1 1267.5 2 1849.5 3 2706.0 4 3664.5 5 6028.0 6 7972.0 7 9019.5 8 9552.5 9 9233.0 10 8436.5 11 7717.0 12 8509.5 13 11596.5 14 19068.0 15 29830.5 16 39144.0 17 45401.5 18 47499.5 19 45112.5 20 40016.5 21 34262.5 22 30157.5 23 29622.5 24 33431.0 25 41612.5 26 53764.5 27 68035.5 28 84778.5 29 104937.5 30 126246.5 31 148718.0 32 174351.5 33 201052.0 34 226995.5 35 251333.0 36 277515.5 37 303091.0 38 322642.0 39 338965.5 40 354758.5 41 367816.0 42 375752.0 43 383450.5 44 390692.5 45 397634.5 46 401067.0 47 398561.5 48 395436.5 49 390051.5 50 382341.5 51 369847.5 52 353433.5 53 334637.0 54 311505.0 55 287586.5 56 262413.0 57 235372.5 58 207804.5 59 179525.5 60 150113.0 61 121154.0 62 95325.0 63 72972.5 64 53751.0 65 39185.0 66 29057.5 67 22175.5 68 16820.0 69 12028.0 70 8532.5 71 6053.5 72 4053.5 73 2586.5 74 1705.5 75 1130.5 76 766.0 77 502.0 78 330.0 79 239.0 80 168.0 81 111.5 82 88.5 83 60.5 84 40.5 85 32.5 86 25.5 87 19.0 88 11.0 89 4.5 90 1.5 91 1.5 92 2.0 93 2.0 94 1.5 95 1.0 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.7061592776462851E-4 7 0.0 8 0.0 9 0.0 10-11 0.003598929726285133 12-13 3.7322234198512484E-5 14-15 0.002404618231932733 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 141.0 20-21 498.0 22-23 1023.0 24-25 2508.0 26-27 3209.0 28-29 5623.0 30-31 13143.0 32-33 16594.0 34-35 23064.0 36-37 34686.0 38-39 43000.0 40-41 46191.0 42-43 55190.0 44-45 66432.0 46-47 65024.0 48-49 57347.0 50-51 50734.0 52-53 49609.0 54-55 52513.0 56-57 55761.0 58-59 56509.0 60-61 55857.0 62-63 54759.0 64-65 57601.0 66-67 61212.0 68-69 63232.0 70-71 62797.0 72-73 60910.0 74-75 62787.0 76-77 61595.0 78-79 67079.0 80-81 70207.0 82-83 67688.0 84-85 68806.0 86-87 73995.0 88-89 79697.0 90-91 86476.0 92-93 92131.0 94-95 114554.0 96-97 336776.0 98-99 605421.0 100-101 6475409.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.21607317643388 #Duplication Level Percentage of deduplicated Percentage of total 1 88.85865494354532 74.83326987085101 2 7.811242821942267 13.156643941831678 3 1.8896037347599686 4.7740501920302485 4 0.6932867805782982 2.3354356098174485 5 0.29358121533555814 1.2362128556962877 6 0.1579076642005403 0.7979018042059469 7 0.09055718577134941 0.5338459408500316 8 0.052977139006396785 0.35692212921926575 9 0.03527705750431891 0.26738057306096885 >10 0.11381777265727185 1.4604909601703286 >50 0.002447852414785255 0.13965693748213626 >100 6.038930581880907E-4 0.07878566030206728 >500 4.193922563402243E-5 0.02940352448257555 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.265398194115713E-5 0.0 1.0663495485289282E-5 0.0 3 0.0 4.265398194115713E-5 0.0 1.0663495485289282E-5 0.0 4 0.0 9.597145936760353E-5 0.0 2.1326990970578564E-5 0.0 5 0.0 9.597145936760353E-5 0.0 2.1326990970578564E-5 0.0 6 0.0 9.597145936760353E-5 0.0 2.1326990970578564E-5 0.0 7 0.0 1.0663495485289281E-4 0.0 2.1326990970578564E-5 0.0 8 0.0 1.172984503381821E-4 0.0 2.1326990970578564E-5 0.0 9 0.0 1.599524322793392E-4 0.0 6.398097291173569E-5 0.0 10-11 1.0663495485289282E-5 1.599524322793392E-4 0.0 7.464446839702498E-5 0.0 12-13 1.0663495485289282E-5 1.6528418002198386E-4 0.0 8.530796388231426E-5 0.0 14-15 1.0663495485289282E-5 2.665873871322321E-4 0.0 9.597145936760353E-5 0.0 16-17 1.0663495485289282E-5 2.879143781028106E-4 0.0 1.172984503381821E-4 0.0 18-19 1.0663495485289282E-5 3.145731168160338E-4 0.0 1.2796194582347139E-4 0.0 20-21 1.0663495485289282E-5 3.518953510145463E-4 0.0 1.3329369356611604E-4 0.0 22-23 1.0663495485289282E-5 3.945493329557034E-4 0.0 1.4395718905140529E-4 0.0 24-25 1.0663495485289282E-5 4.425350626395052E-4 0.0 1.599524322793392E-4 0.0 26-27 1.0663495485289282E-5 4.7452554909537307E-4 0.0 1.8661117099256244E-4 0.0 28-29 1.0663495485289282E-5 4.798572968380177E-4 0.0 2.66587387132232E-4 0.0 30-31 1.0663495485289282E-5 5.33174774264464E-4 0.0 6.291462336320676E-4 0.0 32-33 1.0663495485289282E-5 5.33174774264464E-4 0.0 0.0015408750976243011 0.0 34-35 1.0663495485289282E-5 6.984589542864479E-4 0.0 0.002703196105520833 0.0 36-37 1.5995243227933923E-5 8.637431343084317E-4 0.0 0.004393360139939184 5.331747742644641E-6 38-39 2.1326990970578564E-5 9.010653685069443E-4 0.0 0.007437788100989273 1.0663495485289282E-5 40-41 2.1326990970578564E-5 9.277241072201675E-4 0.0 0.010471552566554073 1.0663495485289282E-5 42-43 2.1326990970578564E-5 9.383876027054568E-4 0.0 0.013745245680537883 1.0663495485289282E-5 44-45 2.1326990970578564E-5 0.0010183638188451262 0.0 0.017322848415852438 1.0663495485289282E-5 46-47 2.6658738713223205E-5 0.0010770130440142173 0.0 0.02123101951121096 1.0663495485289282E-5 48-49 3.1990486455867847E-5 0.0010770130440142173 0.0 0.025027223903973942 1.0663495485289282E-5 50-51 3.1990486455867847E-5 0.0012103067375803336 0.0 0.029047361701928003 1.0663495485289282E-5 52-53 3.1990486455867847E-5 0.0012422972240362013 0.0 0.032832902599205696 1.0663495485289282E-5 54-55 3.1990486455867847E-5 0.0012529607195214906 0.0 0.036634438739711325 1.0663495485289282E-5 56-57 3.1990486455867847E-5 0.0012689559627494244 0.0 0.04087317819511381 1.0663495485289282E-5 58-59 3.1990486455867847E-5 0.0013009464492052922 0.0 0.045399832028619115 1.0663495485289282E-5 60-61 3.1990486455867847E-5 0.0013276051879185155 0.0 0.050033120816977306 1.0663495485289282E-5 62-63 3.1990486455867847E-5 0.0013436004311464494 0.0 0.05433050949754889 1.0663495485289282E-5 64-65 3.1990486455867847E-5 0.0014608988814846316 0.0 0.05823334884516476 1.0663495485289282E-5 66-67 3.1990486455867847E-5 0.0014608988814846316 0.0 0.062450761309596675 1.5995243227933923E-5 68-69 3.1990486455867847E-5 0.00148222587245521 0.0 0.06686544844050643 2.1326990970578564E-5 70-71 3.1990486455867847E-5 0.0014982211156831442 0.0 0.07093890371588694 2.1326990970578564E-5 72-73 4.265398194115713E-5 0.0015035528634257888 0.0 0.07420193333438546 2.1326990970578564E-5 74-75 4.265398194115713E-5 0.0015408750976243011 0.0 0.07631863718821538 2.1326990970578564E-5 76-77 4.265398194115713E-5 0.001620851313763971 0.0 0.07837136006913357 2.1326990970578564E-5 78-79 5.3317477426446404E-5 0.0016421783047345494 0.0 0.07981626370739027 2.1326990970578564E-5 80-81 5.3317477426446404E-5 0.0016528418002198387 0.0 0.08031211624745623 3.1990486455867847E-5 82-83 5.3317477426446404E-5 0.001663505295705128 0.0 0.08081330053526482 4.265398194115713E-5 84-85 5.3317477426446404E-5 0.001663505295705128 0.0 0.08109055141788234 4.265398194115713E-5 86-87 5.3317477426446404E-5 0.0016688370434477726 0.0 0.0812398403546764 4.265398194115713E-5 88 5.3317477426446404E-5 0.0017488132595874421 0.0 0.08124517210241904 4.265398194115713E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12285 0.0 49.093678 1 GTATCAA 21045 0.0 37.37781 1 TCAACGC 25220 0.0 30.58671 4 ATCAACG 25625 0.0 30.188139 3 CAACGCA 25940 0.0 29.706266 5 TATCAAC 26665 0.0 29.141184 2 AACGCAG 26750 0.0 28.85552 6 ACGCAGA 31085 0.0 24.817444 7 CGCAGAG 32080 0.0 24.089012 8 GTACATG 30785 0.0 21.766455 1 TACATGG 30815 0.0 21.209042 2 GCAGAGT 37305 0.0 20.587494 9 ACATGGG 31270 0.0 20.399826 3 GAGTACT 19205 0.0 19.608904 12-13 GTGGTAT 6135 0.0 18.924347 1 CAGAGTA 35855 0.0 18.715267 10-11 CATGGGG 21690 0.0 18.483984 4 AGAGTAC 33230 0.0 18.394175 10-11 TGGTATC 6060 0.0 18.01048 2 GTACTTT 21470 0.0 17.45941 14-15 >>END_MODULE