##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139506_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7923435 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.51063951430156 33.0 33.0 33.0 33.0 33.0 2 32.541344252839835 33.0 33.0 33.0 33.0 33.0 3 32.55690770480227 33.0 33.0 33.0 33.0 33.0 4 36.463248326010124 37.0 37.0 37.0 37.0 37.0 5 36.489838687387476 37.0 37.0 37.0 37.0 37.0 6 36.48074402074353 37.0 37.0 37.0 37.0 37.0 7 36.45697756086849 37.0 37.0 37.0 37.0 37.0 8 36.450141384386946 37.0 37.0 37.0 37.0 37.0 9 36.4893370110312 37.0 37.0 37.0 37.0 37.0 10-11 36.40823948199234 37.0 37.0 37.0 37.0 37.0 12-13 36.409967078672324 37.0 37.0 37.0 37.0 37.0 14-15 38.37226865620782 40.0 37.0 40.0 37.0 40.0 16-17 38.324221376208676 40.0 37.0 40.0 37.0 40.0 18-19 38.329726059467895 40.0 37.0 40.0 37.0 40.0 20-21 38.330310284650864 40.0 37.0 40.0 37.0 40.0 22-23 38.331641912444596 40.0 37.0 40.0 37.0 40.0 24-25 38.31798962272387 40.0 37.0 40.0 37.0 40.0 26-27 38.20452111939094 40.0 37.0 40.0 37.0 40.0 28-29 38.13500166046018 40.0 37.0 40.0 35.0 40.0 30-31 37.99291980161421 40.0 37.0 40.0 33.0 40.0 32-33 37.99616153166025 40.0 37.0 40.0 33.0 40.0 34-35 37.9522779162755 40.0 37.0 40.0 33.0 40.0 36-37 37.867403850102235 40.0 37.0 40.0 33.0 40.0 38-39 37.81231119397702 40.0 37.0 40.0 33.0 40.0 40-41 37.822087421267284 40.0 37.0 40.0 33.0 40.0 42-43 37.756703944901915 40.0 37.0 40.0 33.0 40.0 44-45 37.693800409383044 40.0 37.0 40.0 33.0 40.0 46-47 37.6553440275865 40.0 37.0 40.0 33.0 40.0 48-49 37.633316554470085 40.0 37.0 40.0 33.0 40.0 50-51 37.54219966936196 40.0 37.0 40.0 33.0 40.0 52-53 37.44661178354602 40.0 37.0 40.0 33.0 40.0 54-55 37.29327472065867 40.0 37.0 40.0 33.0 40.0 56-57 37.18338356279223 38.5 37.0 40.0 33.0 40.0 58-59 37.02417127652731 37.0 37.0 40.0 33.0 40.0 60-61 36.908045601257115 37.0 37.0 40.0 33.0 40.0 62-63 36.74624441845994 37.0 37.0 40.0 33.0 40.0 64-65 36.57316953569381 37.0 37.0 40.0 33.0 40.0 66-67 36.348503970817305 37.0 37.0 40.0 33.0 40.0 68-69 36.12042500981988 37.0 37.0 40.0 33.0 40.0 70-71 35.87037233953181 37.0 35.0 37.0 33.0 40.0 72-73 35.66220525317593 37.0 33.0 37.0 33.0 40.0 74-75 35.44059597738623 37.0 33.0 37.0 33.0 40.0 76-77 33.75035776153807 35.0 33.0 37.0 27.0 37.0 78-79 34.94700194985402 37.0 33.0 37.0 33.0 37.0 80-81 35.018042288604796 37.0 33.0 37.0 33.0 37.0 82-83 34.864477509152294 37.0 33.0 37.0 33.0 37.0 84-85 34.731807434960956 37.0 33.0 37.0 33.0 37.0 86-87 34.61483923229095 37.0 33.0 37.0 33.0 37.0 88-89 34.445772389395 37.0 33.0 37.0 30.0 37.0 90-91 34.45316074694665 37.0 33.0 37.0 33.0 37.0 92-93 34.38703517321411 37.0 33.0 37.0 33.0 37.0 94-95 34.36186359113196 37.0 33.0 37.0 33.0 37.0 96-97 34.3652741913238 37.0 33.0 37.0 33.0 37.0 98-99 34.36611959660956 37.0 33.0 37.0 33.0 37.0 100 34.37816926981272 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 17.0 20 83.0 21 347.0 22 1390.0 23 3843.0 24 8694.0 25 16718.0 26 29066.0 27 44902.0 28 67532.0 29 94310.0 30 129150.0 31 171441.0 32 226832.0 33 303895.0 34 414848.0 35 595759.0 36 1012014.0 37 2276404.0 38 2472518.0 39 53670.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.51544121962255 20.503960719056824 14.532383997597002 23.448214063723626 2 14.55205980739414 21.056612441447427 41.9284691551076 22.46285859605083 3 17.908634323371114 26.756703374231 30.63498343836985 24.699678864028037 4 12.31475994944112 18.525980209341025 38.98576816746777 30.173491673750085 5 13.240557914591337 38.049116323917595 35.48620011396572 13.224125647525348 6 29.429960185167303 38.08123982684769 19.062352928258715 13.426447059726287 7 26.37811757148257 32.90728074376833 23.03942671328786 17.675174971461242 8 24.52149856722495 36.6856294018945 21.091874925458466 17.700997105422083 9 25.729648820240214 16.91248808124254 21.012868787337815 36.34499431117943 10-11 24.24114777847973 26.79324610936802 28.769608716414076 20.19599739573818 12-13 25.2930453251766 24.348972219491223 28.79873534615614 21.559247109176034 14-15 22.3796503977119 25.640403972581744 26.469702718975352 25.51024291073101 16-17 21.78223838524579 28.893598546589956 27.05132937924019 22.27283368892406 18-19 21.821268174724725 27.87299321569496 28.905411604941545 21.400327004638772 20-21 22.745539531616902 26.980575435602844 28.806040224832973 21.46784480794728 22-23 22.49585631793892 27.053221835473657 28.612463062173944 21.83845878441348 24-25 22.2296251502328 27.27857705553816 28.678803540949165 21.81299425327987 26-27 22.132825329246433 27.435150611071123 28.659357698720772 21.772666360961665 28-29 21.968001739572877 27.26638340486897 28.83021115506161 21.935403700496543 30-31 22.26826375008118 27.39136458711894 28.532498599477684 21.8078730633222 32-33 22.251111946788736 27.34078989780631 28.59445415272087 21.81364400268408 34-35 22.227877188773675 27.343515151761448 28.62381368996918 21.80479396949569 36-37 22.17415298814041 27.405979033168936 28.459086238427368 21.96078174026329 38-39 22.089461107919952 27.334066051262983 28.62042580219522 21.95604703862184 40-41 22.217494664439666 27.25844375434975 28.538637078134126 21.98542450307646 42-43 22.203312398392438 27.314787169925598 28.35045083285332 22.13144959882864 44-45 22.22996034181088 27.473534619701105 28.139808899764013 22.156696138723998 46-47 22.433969084965348 27.400479047621427 27.728977117126103 22.436574750287118 48-49 22.28373839681256 27.538850644981206 27.731571548655374 22.445839409550857 50-51 22.257731894020242 27.641660585943434 27.71830375413898 22.382303765897344 52-53 22.44239648997137 27.62103610174737 27.64214780220811 22.294419606073152 54-55 22.439506436802688 27.61072880513605 27.543622181181792 22.406142576879475 56-57 22.496451035603858 27.754690456228055 27.40462228462739 22.3442362235407 58-59 22.31814131370532 27.87029110338507 27.561101419420535 22.250466163489076 60-61 22.4631291895032 27.93421833563512 27.36298651645237 22.239665958409315 62-63 22.437300813554412 28.01108846803924 27.3401094334854 22.21150128492095 64-65 22.428119687828413 27.875136984362697 27.346640549590777 22.350102778218112 66-67 22.500496575663792 27.838318504515918 27.238823329885925 22.42236158993437 68-69 22.423295850538018 27.796342399736762 27.337714196922924 22.4426475528023 70-71 22.4545783104773 27.598006888488275 27.411093288331617 22.53632151270281 72-73 22.50605957550821 27.665868496579364 27.305066297177344 22.523005630735078 74-75 22.381192732784555 27.75637987050863 27.318322722310178 22.544104674396635 76-77 22.49072727107862 27.706655258689473 27.248586541452173 22.554030928779735 78-79 22.44440363342292 27.700186050196614 27.194365561991923 22.661044754388545 80-81 22.426062462637926 27.76489841265366 27.234743151398845 22.574295973309567 82-83 22.491412819688588 27.69265007588319 27.387346606686556 22.428590497741666 84-85 22.552683960976335 27.7478480854939 27.232987308697503 22.46648064483226 86-87 22.391105295161335 27.722040165598415 27.345759275770433 22.541095263469817 88-89 22.485160734682626 27.704576277609366 27.30466059652442 22.505602391183587 90-91 22.44457922215431 27.83625137563728 27.260281192452346 22.45888820975607 92-93 22.53033352469396 27.696330110769463 27.335968760775977 22.437367603760602 94-95 22.353143175494296 27.774764238248444 27.35558922332457 22.51650336293269 96-97 22.4790022827116 27.869099115733782 27.406188310435958 22.24571029111866 98-99 23.58642264988481 29.756227923550938 27.58958603962497 19.06776338693928 100 22.51487251714327 30.783825713592073 21.431693884900895 25.269607884363758 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1977.0 1 1742.0 2 2192.0 3 3022.0 4 3974.0 5 6479.5 6 8594.0 7 9877.5 8 10525.5 9 10115.5 10 9320.0 11 8527.5 12 9185.5 13 12250.5 14 19913.5 15 31092.0 16 40780.0 17 46868.5 18 48587.0 19 45661.0 20 39810.0 21 33536.0 22 29124.5 23 28647.5 24 32259.0 25 39690.5 26 50562.5 27 63335.5 28 77809.0 29 94918.5 30 113234.0 31 132311.0 32 153419.5 33 174403.0 34 195350.5 35 216046.0 36 237534.0 37 257233.0 38 272461.5 39 284841.0 40 295251.5 41 303818.0 42 309264.5 43 314996.0 44 320428.0 45 325552.5 46 331399.5 47 335354.0 48 334463.0 49 329407.5 50 324460.0 51 316630.5 52 303705.5 53 287514.5 54 268788.0 55 248058.5 56 226652.0 57 204456.5 58 182032.5 59 157117.0 60 129442.5 61 103916.0 62 81835.5 63 62540.5 64 45717.5 65 33272.5 66 24896.5 67 18688.0 68 13887.0 69 9871.5 70 6644.0 71 4467.0 72 2803.5 73 1675.5 74 1029.5 75 660.5 76 453.0 77 305.0 78 199.5 79 135.0 80 92.5 81 61.0 82 46.5 83 36.0 84 27.5 85 22.0 86 15.5 87 10.5 88 7.0 89 3.5 90 1.5 91 1.5 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 7.572473302298813E-5 7 0.0 8 0.0 9 0.0 10-11 0.003388681802778719 12-13 2.5241577674329376E-5 14-15 0.0022023276520852383 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 136.0 20-21 472.0 22-23 1041.0 24-25 2696.0 26-27 3345.0 28-29 5822.0 30-31 13615.0 32-33 16969.0 34-35 23433.0 36-37 34654.0 38-39 42747.0 40-41 45444.0 42-43 54315.0 44-45 64007.0 46-47 62693.0 48-49 55508.0 50-51 48754.0 52-53 45674.0 54-55 51382.0 56-57 54469.0 58-59 54954.0 60-61 54742.0 62-63 53912.0 64-65 55963.0 66-67 60561.0 68-69 56895.0 70-71 56372.0 72-73 53251.0 74-75 54374.0 76-77 53355.0 78-79 58857.0 80-81 60622.0 82-83 58763.0 84-85 58972.0 86-87 62413.0 88-89 68036.0 90-91 73553.0 92-93 78732.0 94-95 96290.0 96-97 278771.0 98-99 496230.0 100-101 5350641.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.13419444384395 #Duplication Level Percentage of deduplicated Percentage of total 1 88.67574874507007 74.60662687371175 2 7.962407878158293 13.398215453243296 3 1.948975974917182 4.919265709201876 4 0.6844268819357048 2.3033481746948965 5 0.2999683243825631 1.2618796665298309 6 0.15183416470068395 0.7664667081687582 7 0.08294428951301125 0.4884915687325922 8 0.04925345270845033 0.33151196537627464 9 0.03555579661218693 0.2692312475197952 >10 0.10546204301319008 1.3593073936247864 >50 0.0024229215875481275 0.13786608041528978 >100 9.25703883301789E-4 0.11466360962890279 >500 7.382351776874768E-5 0.043125549151954885 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.262078883716469E-5 0.0 1.262078883716469E-5 0.0 3 0.0 1.262078883716469E-5 0.0 1.262078883716469E-5 0.0 4 0.0 8.834552186015282E-5 0.0 2.524157767432938E-5 0.0 5 0.0 8.834552186015282E-5 0.0 3.7862366511494065E-5 0.0 6 1.6407025488314095E-4 8.834552186015282E-5 0.0 5.048315534865876E-5 0.0 7 1.6407025488314095E-4 8.834552186015282E-5 0.0 5.048315534865876E-5 0.0 8 1.6407025488314095E-4 1.135870995344822E-4 0.0 5.048315534865876E-5 0.0 9 1.6407025488314095E-4 1.8931183255747034E-4 0.0 8.834552186015282E-5 0.0 10-11 1.7038064930172331E-4 1.8931183255747034E-4 0.0 9.465591627873517E-5 0.0 12-13 1.7669104372030565E-4 1.8931183255747034E-4 0.0 1.0096631069731752E-4 0.0 14-15 1.7669104372030565E-4 2.9027814325478785E-4 0.0 1.0096631069731752E-4 1.8931183255747036E-5 16-17 2.6503656558045846E-4 3.028989320919525E-4 0.0 1.135870995344822E-4 2.524157767432938E-5 18-19 2.776573544176232E-4 3.092093265105349E-4 0.0 1.135870995344822E-4 2.524157767432938E-5 20-21 2.776573544176232E-4 3.1551972092911724E-4 0.0 1.262078883716469E-4 2.524157767432938E-5 22-23 2.776573544176232E-4 3.6600287627777596E-4 0.0 1.5144946604597629E-4 3.786236651149407E-5 24-25 2.839677488362055E-4 4.354172148821818E-4 0.0 1.7038064930172331E-4 5.048315534865876E-5 26-27 2.9027814325478785E-4 4.669691869750935E-4 0.0 2.3979498790612912E-4 5.048315534865876E-5 28-29 2.9027814325478785E-4 4.669691869750935E-4 0.0 6.184186530210698E-4 5.048315534865876E-5 30-31 2.9027814325478785E-4 5.553147088352464E-4 0.0 0.0022969835683639738 5.67935497672411E-5 32-33 2.9027814325478785E-4 5.742458920909933E-4 0.0 0.005546836693933881 6.310394418582345E-5 34-35 2.9027814325478785E-4 6.625914139511462E-4 0.0 0.00950345399438501 6.310394418582345E-5 36-37 2.9027814325478785E-4 7.320057525555519E-4 0.0 0.015466776719945327 6.310394418582345E-5 38-39 2.9027814325478785E-4 7.446265413927167E-4 0.0 0.024124637862240304 8.834552186015282E-5 40-41 2.9027814325478785E-4 7.951096967413754E-4 0.0 0.031968458124538156 8.834552186015282E-5 42-43 2.9027814325478785E-4 8.203512744157048E-4 0.0 0.03864485541939828 8.834552186015282E-5 44-45 2.9027814325478785E-4 9.465591627873517E-4 0.0 0.0455358061244902 8.834552186015282E-5 46-47 3.028989320919525E-4 0.0010475254734846691 0.0 0.05223744499702465 8.834552186015282E-5 48-49 3.028989320919525E-4 0.0010601462623218338 0.0 0.05856046020444416 8.834552186015282E-5 50-51 3.6600287627777596E-4 0.0011989749395306453 0.0 0.0646941635793062 1.0096631069731752E-4 52-53 3.786236651149407E-4 0.0012242165172049748 0.0 0.06986237660812514 1.135870995344822E-4 54-55 3.786236651149407E-4 0.0012368373060421395 0.0 0.07513786634205998 1.262078883716469E-4 56-57 3.786236651149407E-4 0.001262078883716469 0.0 0.07942262415227738 1.262078883716469E-4 58-59 3.786236651149407E-4 0.001281010066972216 0.0 0.08378310669551779 1.262078883716469E-4 60-61 3.912444539521054E-4 0.0012999412502279631 0.0 0.08812465805550244 1.262078883716469E-4 62-63 4.4172760930076413E-4 0.0013251828279022923 0.0 0.09251669257083575 1.262078883716469E-4 64-65 4.4172760930076413E-4 0.0014513907162739394 0.0 0.09629661882756657 1.262078883716469E-4 66-67 4.4172760930076413E-4 0.0014577011106925216 0.0 0.10049934151034243 1.3882867720881156E-4 68-69 4.4172760930076413E-4 0.001482942688366851 0.0 0.10478409932055983 1.6407025488314095E-4 70-71 4.669691869750935E-4 0.0015144946604597627 0.0 0.10837471374473319 1.7669104372030565E-4 72-73 5.300731311609169E-4 0.00153342584371551 0.0 0.11142263424890847 1.7669104372030565E-4 74-75 5.300731311609169E-4 0.0015902193934827509 0.0 0.11393417122750424 1.7669104372030565E-4 76-77 5.300731311609169E-4 0.0016974960985986507 0.0 0.1160923261186594 1.8300143813888798E-4 78-79 5.300731311609169E-4 0.001760600042784474 0.0 0.11802330681074559 1.8931183255747034E-4 80-81 5.300731311609169E-4 0.0017669104372030565 0.0 0.11874269177446398 2.0193262139463504E-4 82-83 5.300731311609169E-4 0.0017669104372030565 0.0 0.11924121293353199 2.0193262139463504E-4 84-85 5.300731311609169E-4 0.0017669104372030565 0.0 0.11947469752701953 2.0193262139463504E-4 86-87 5.363835255794993E-4 0.0017669104372030565 0.0 0.11962614699306551 2.0193262139463504E-4 88 5.553147088352464E-4 0.00183001438138888 0.0 0.11964507817632125 2.0193262139463504E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11805 0.0 51.41238 1 GTATCAA 21215 0.0 37.54193 1 TCAACGC 25875 0.0 30.281912 4 ATCAACG 26210 0.0 29.943605 3 CAACGCA 26455 0.0 29.603224 5 TATCAAC 26920 0.0 29.297869 2 AACGCAG 27175 0.0 28.977407 6 CTTATAC 5715 0.0 28.339642 1 ACGCAGA 31050 0.0 25.388811 7 CGCAGAG 31890 0.0 24.625965 8 GTGGTAT 5510 0.0 22.67092 1 GTACATG 28700 0.0 22.032658 1 TATACAC 9050 0.0 21.799154 3 TGGTATC 5440 0.0 21.45819 2 GCAGAGT 36750 0.0 21.311771 9 TACATGG 29510 0.0 20.873224 2 ACATGGG 29385 0.0 20.727478 3 GAGTACT 19760 0.0 20.339844 12-13 TTATACA 8845 0.0 19.820713 2 CAGAGTA 35780 0.0 19.120054 10-11 >>END_MODULE