##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139505_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11193234 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.188328770755618 28.0 18.0 32.0 18.0 33.0 2 28.166250165055068 29.0 27.0 32.0 18.0 33.0 3 30.156048555761455 31.0 29.0 33.0 25.0 33.0 4 30.239203075715203 32.0 29.0 33.0 27.0 33.0 5 31.707587726657014 33.0 32.0 33.0 30.0 33.0 6 35.54502863068886 38.0 36.0 38.0 29.0 38.0 7 35.91499132422319 38.0 36.0 38.0 31.0 38.0 8 36.37069402819596 38.0 37.0 38.0 33.0 38.0 9 36.57412209911809 38.0 38.0 38.0 34.0 38.0 10-11 36.72114748070129 38.0 38.0 38.0 34.0 38.0 12-13 36.78269962014552 38.0 38.0 38.0 34.5 38.0 14-15 36.80779598639678 38.0 38.0 38.0 35.0 38.0 16-17 36.83053700119197 38.0 38.0 38.0 35.0 38.0 18-19 36.841367249179285 38.0 38.0 38.0 35.0 38.0 20-21 36.85545105623906 38.0 38.0 38.0 35.0 38.0 22-23 36.8753565094751 38.0 38.0 38.0 35.0 38.0 24-25 36.88745193116807 38.0 38.0 38.0 35.0 38.0 26-27 36.845757623518594 38.0 38.0 38.0 35.0 38.0 28-29 36.83218566483874 38.0 38.0 38.0 35.0 38.0 30-31 36.81112816529178 38.0 38.0 38.0 35.0 38.0 32-33 36.78452450075412 38.0 38.0 38.0 35.0 38.0 34-35 36.7579415730343 38.0 38.0 38.0 35.0 38.0 36-37 36.736952523792354 38.0 38.0 38.0 35.0 38.0 38-39 36.70414455275096 38.0 38.0 38.0 34.0 38.0 40-41 36.73554252912553 38.0 38.0 38.0 35.0 38.0 42-43 36.70158153852601 38.0 38.0 38.0 34.0 38.0 44-45 36.66285520995419 38.0 38.0 38.0 34.0 38.0 46-47 36.62905690669838 38.0 38.0 38.0 34.0 38.0 48-49 36.59414754823942 38.0 38.0 38.0 34.0 38.0 50-51 36.57241620187092 38.0 38.0 38.0 34.0 38.0 52-53 36.5422303307061 38.0 38.0 38.0 34.0 38.0 54-55 36.474336794389245 38.0 38.0 38.0 34.0 38.0 56-57 36.481437983813926 38.0 38.0 38.0 34.0 38.0 58-59 36.471461324400366 38.0 38.0 38.0 34.0 38.0 60-61 36.430739329699904 38.0 38.0 38.0 34.0 38.0 62-63 36.43398661805346 38.0 38.0 38.0 34.0 38.0 64-65 36.45849983466735 38.0 38.0 38.0 34.0 38.0 66-67 36.43524080941987 38.0 38.0 38.0 34.0 38.0 68-69 36.41382889316713 38.0 38.0 38.0 34.0 38.0 70-71 36.41079681134175 38.0 38.0 38.0 34.0 38.0 72-73 36.39527215905743 38.0 38.0 38.0 34.0 38.0 74-75 36.385498461178315 38.0 38.0 38.0 34.0 38.0 76-77 36.35302633294137 38.0 38.0 38.0 33.5 38.0 78-79 36.35045968621637 38.0 38.0 38.0 34.0 38.0 80-81 36.34208490598154 38.0 38.0 38.0 33.5 38.0 82-83 36.31229489197294 38.0 38.0 38.0 33.0 38.0 84-85 36.27396965337179 38.0 37.0 38.0 33.0 38.0 86-87 36.29164447471665 38.0 37.0 38.0 33.0 38.0 88-89 36.291406100748716 38.0 37.0 38.0 33.0 38.0 90-91 36.28244160602539 38.0 37.0 38.0 33.0 38.0 92-93 36.26887208273898 38.0 37.0 38.0 33.0 38.0 94-95 36.25567499257835 38.0 37.0 38.0 33.0 38.0 96-97 36.25110314244996 38.0 37.0 38.0 33.0 38.0 98-99 36.294212220062064 38.0 37.0 38.0 33.0 38.0 100-101 35.78110581866245 38.0 36.0 38.0 31.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 12.0 18 77.0 19 170.0 20 293.0 21 723.0 22 2280.0 23 6566.0 24 15416.0 25 28880.0 26 49275.0 27 75004.0 28 106373.0 29 144374.0 30 186665.0 31 239129.0 32 305486.0 33 399992.0 34 559939.0 35 899831.0 36 2103608.0 37 6069141.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 39.81447184969063 22.816730178248754 13.100682072759312 24.26811589930131 2 15.888616283729975 20.71197653868399 40.65296052954848 22.746446648037555 3 18.7235692153089 26.18643366687174 29.48295680642235 25.607040311397018 4 13.535855678528655 18.04697373431128 36.89651266113082 31.520657926029244 5 13.95545918000235 37.21044020159612 35.50653551685934 13.327565101542183 6 31.24151608016057 37.395805358844456 17.72039251569296 13.64228604530201 7 27.255786511122025 32.29041793390056 22.055676871305618 18.398118683671797 8 24.39430820440277 37.67978941564163 20.31825654676745 17.60764583318816 9 25.192460016470662 16.77597377129791 20.68806030500211 37.343505907229314 10-11 24.583888114189705 26.64955573382794 28.39223804274252 20.374318109239837 12-13 25.164822784907383 23.87269845336924 28.675336368381117 22.287142393342265 14-15 22.21745247485266 25.53615434755574 25.821675097952046 26.424718079639554 16-17 22.12795247557587 28.801372329033768 26.65190864409696 22.4187665512934 18-19 22.180801366253935 27.814445762502597 28.238903073052885 21.765849798190587 20-21 22.7294993592433 26.89863482728873 28.322486986528027 22.049378826939943 22-23 22.484171586537588 27.091902073464425 28.145786470461807 22.27813986953618 24-25 22.457058571632487 27.16542231294541 28.267356115248532 22.110163000173568 26-27 22.46224502343511 27.230249593209965 28.2911118879919 22.016393495363022 28-29 22.449368490748586 27.127786639507516 28.27952194221302 22.14332292753088 30-31 22.45048104941785 27.257224826369388 28.353389329185635 21.938904795027128 32-33 22.351018869265342 27.39931316297655 28.228684929800817 22.020983037957283 34-35 22.614379632106242 27.131303887232573 28.32905973269957 21.92525674796162 36-37 22.2246008825101 27.31636742577585 28.25527348081389 22.20375821090016 38-39 22.112312736755293 27.097480829428562 28.49038345877875 22.299822975037394 40-41 22.343369059386614 26.992125065897234 28.464990948027523 22.199514926688625 42-43 22.436296754105676 26.97929120797263 28.296700366850587 22.28771167107111 44-45 22.232988411380113 27.201553161125712 28.21944675057995 22.346011676914223 46-47 22.546456495669005 27.018273278235156 27.852934673807837 22.582335552288004 48-49 22.39195346347772 27.10432489580008 27.854119591936378 22.649602048785823 50-51 22.22524967694885 27.18671665505549 28.045478257006646 22.542555410989014 52-53 22.38756719085221 27.144128513005022 28.152660488143216 22.315643807999553 54-55 22.340483213088362 27.12672828429535 27.912679973665533 22.62010852895075 56-57 22.52635177075738 27.34801169182611 27.659296922729297 22.466339614687218 58-59 22.215448057933216 27.56272711409468 27.989879339350914 22.23194548862119 60-61 22.461008572128947 27.84058751871148 27.53578854502763 22.162615364131945 62-63 22.179890645900887 28.15616526056394 27.553642328514943 22.110301765020225 64-65 22.17140431008475 28.030311165483173 27.536104957896207 22.262179566535867 66-67 22.237036871722047 28.063154291173447 27.382290676731802 22.3175181603727 68-69 22.193080578767123 27.891763131046936 27.510897177894872 22.404259112291065 70-71 22.2605133561623 27.49681267324308 27.644233742746614 22.598440227848002 72-73 22.38573497881721 27.363886351939847 27.592434418600902 22.657944250642036 74-75 22.34259714806025 27.391570134597792 27.632059588905683 22.633773128436275 76-77 22.531160705488226 27.369162202481274 27.501504987960097 22.598172104070404 78-79 22.4360545715969 27.35731883993119 27.456304675772408 22.750321912699505 80-81 22.474388804790664 27.453000523158664 27.439238995811145 22.633371676239523 82-83 22.507377636908785 27.43780288666487 27.51151794266267 22.543301533763668 84-85 22.560052969408872 27.45617060113354 27.442314551470215 22.541461877987377 86-87 22.51965370480996 27.442963215436322 27.50056228201973 22.536820797733988 88-89 22.558985385924057 27.43499983381726 27.487292770406636 22.51872200985205 90-91 22.54200239901536 27.522184028778877 27.48588994972165 22.44992362248411 92-93 22.627986137244108 27.43536367961487 27.51908276785533 22.417567415285692 94-95 22.519630196272196 27.501140009882068 27.53878712473434 22.440442669111388 96-97 22.573351544233986 27.513638420810178 27.50284120571958 22.41016882923625 98-99 22.7726709095511 28.063620228739683 27.59903029865295 21.564678563056273 100-101 23.408802024297408 30.56937881840465 24.90069976141812 21.121119395879823 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1863.0 1 1811.5 2 2353.0 3 3078.5 4 3780.0 5 5380.5 6 7047.5 7 9009.0 8 10903.0 9 11995.0 10 11906.0 11 11270.0 12 12127.0 13 15083.5 14 21449.5 15 29147.0 16 34570.0 17 37313.5 18 37864.5 19 36428.0 20 34232.0 21 32917.5 22 33709.5 23 38654.5 24 48222.5 25 62429.5 26 80202.0 27 99480.5 28 120495.5 29 142869.0 30 164487.5 31 187794.5 32 214092.5 33 241699.5 34 268918.5 35 294670.0 36 322944.5 37 348749.0 38 370558.5 39 390123.5 40 407496.5 41 425271.0 42 437896.5 43 453841.0 44 489621.0 45 511415.0 46 502686.0 47 491327.5 48 482242.5 49 476466.0 50 471477.5 51 461132.5 52 445670.0 53 424254.0 54 399537.0 55 374331.5 56 345315.5 57 313744.0 58 281778.5 59 245343.0 60 205398.5 61 167560.5 62 133360.0 63 104219.5 64 79953.0 65 59938.5 66 44415.5 67 33612.5 68 25633.5 69 19137.5 70 14205.0 71 10218.0 72 7055.0 73 4746.0 74 3151.5 75 2024.0 76 1301.0 77 824.5 78 507.5 79 313.0 80 202.5 81 125.5 82 88.5 83 63.0 84 39.5 85 26.5 86 20.5 87 16.0 88 10.0 89 6.5 90 6.0 91 3.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0028588699208825616 4 0.0 5 0.04930657216672143 6 0.0 7 0.001965473070606761 8 0.0 9 0.0 10-11 4.466984251379003E-6 12-13 0.0 14-15 1.786793700551601E-5 16-17 0.0 18-19 0.0 20-21 6.253895842079481E-5 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 6.671195562809307E-4 48-49 1.8490470248691136E-4 50-51 6.551118328498895E-4 52-53 0.001310659502177791 54-55 0.002907521685791752 56-57 0.002925904549752218 58-59 0.006866879957614775 60-61 0.00597736187416623 62-63 0.0067370309894389255 64-65 0.004057141366557658 66-67 0.0066026844365207685 68-69 0.006881055289822903 70-71 0.003532613623582093 72-73 0.0027300761033894135 74-75 0.0039004577500169344 76-77 0.0021715435104394526 78-79 0.0 80-81 5.405300161557803E-4 82-83 2.452517587338053E-4 84-85 0.0 86-87 0.0 88-89 0.0 90-91 3.489814076083647E-5 92-93 7.826352423121092E-4 94-95 1.071548610385997E-4 96-97 0.0 98-99 1.245282170666295E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 122.0 20-21 455.0 22-23 903.0 24-25 1171.0 26-27 3377.0 28-29 8862.0 30-31 25888.0 32-33 32862.0 34-35 46051.0 36-37 70937.0 38-39 77825.0 40-41 75125.0 42-43 83306.0 44-45 98241.0 46-47 98612.0 48-49 92048.0 50-51 82881.0 52-53 74042.0 54-55 80653.0 56-57 81933.0 58-59 89389.0 60-61 87241.0 62-63 86478.0 64-65 101454.0 66-67 110588.0 68-69 106638.0 70-71 122188.0 72-73 87338.0 74-75 87758.0 76-77 92332.0 78-79 97011.0 80-81 96195.0 82-83 90430.0 84-85 89775.0 86-87 93449.0 88-89 98252.0 90-91 100143.0 92-93 97430.0 94-95 102928.0 96-97 165750.0 98-99 921371.0 100-101 7233802.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.54047251228512 #Duplication Level Percentage of deduplicated Percentage of total 1 89.56340959381963 75.71732966872841 2 7.278394319875277 12.306377898659761 3 1.7093301897884654 4.335227457726926 4 0.6439941459292448 2.177742775680154 5 0.3050048289778907 1.2892626180159796 6 0.1588814908871907 0.8059149787835655 7 0.09084056863880365 0.537579321720639 8 0.06506564639934996 0.44005443927346477 9 0.043152575070974974 0.3283325177959872 >10 0.13824589679941698 1.7827052833954256 >50 0.0028336247972723322 0.15716551039779836 >100 8.10937476657871E-4 0.10104884128556693 >500 3.6181539798275616E-5 0.02125868853624418 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.786793700551601E-5 0.0 0.0 0.0 3 0.0 2.6801905508274018E-5 0.0 8.933968502758005E-6 0.0 4 0.0 3.573587401103202E-5 0.0 8.933968502758005E-6 0.0 5 8.933968502758005E-6 4.4669842513790025E-5 0.0 1.786793700551601E-5 0.0 6 8.933968502758005E-6 4.4669842513790025E-5 0.0 1.786793700551601E-5 0.0 7 8.933968502758005E-6 4.4669842513790025E-5 0.0 2.6801905508274018E-5 0.0 8 8.933968502758005E-6 5.3603811016548036E-5 0.0 2.6801905508274018E-5 2.6801905508274018E-5 9 8.933968502758005E-6 1.2507555903861208E-4 0.0 4.4669842513790025E-5 2.6801905508274018E-5 10-11 2.6801905508274018E-5 1.2507555903861208E-4 0.0 5.3603811016548036E-5 2.6801905508274018E-5 12-13 2.6801905508274018E-5 1.2507555903861208E-4 0.0 5.3603811016548036E-5 2.6801905508274018E-5 14-15 2.6801905508274018E-5 2.0548127556343414E-4 0.0 7.147174802206404E-5 3.573587401103202E-5 16-17 5.3603811016548036E-5 2.1888222831757114E-4 0.0 8.933968502758005E-5 3.573587401103202E-5 18-19 6.253777951930604E-5 2.635520708313612E-4 0.0 1.0274063778171707E-4 5.3603811016548036E-5 20-21 6.253777951930604E-5 3.037549290937722E-4 0.0 1.2060857478723308E-4 5.3603811016548036E-5 22-23 6.253777951930604E-5 3.126888975965302E-4 0.0 1.474104802955071E-4 5.807079526792704E-5 24-25 6.700476377068504E-5 3.752266771158362E-4 0.0 1.742123858037811E-4 7.147174802206404E-5 26-27 7.147174802206404E-5 4.0649556687548925E-4 0.0 2.8588699208825617E-4 7.147174802206404E-5 28-29 7.593873227344304E-5 4.109625511268682E-4 0.0 8.219251022537366E-4 7.147174802206404E-5 30-31 9.827365353033807E-5 4.556323936406583E-4 0.0 0.0025104451492749995 7.147174802206404E-5 32-33 1.1614159053585407E-4 4.556323936406583E-4 0.0 0.006512863038510586 7.147174802206404E-5 34-35 1.3400952754137008E-4 5.092362046572064E-4 0.0 0.011949182872438832 7.147174802206404E-5 36-37 1.518774645468861E-4 5.807079526792704E-4 0.0 0.020324778343774462 7.147174802206404E-5 38-39 1.518774645468861E-4 6.343117636958184E-4 0.0 0.034757604459980024 7.593873227344304E-5 40-41 1.518774645468861E-4 6.968495432151244E-4 0.0 0.0723115410613233 8.040571652482205E-5 42-43 1.518774645468861E-4 7.013165274665034E-4 0.0 0.08527026237457377 8.040571652482205E-5 44-45 1.608114330496441E-4 7.951231967454625E-4 0.0 0.1026870339707005 8.040571652482205E-5 46-47 1.697454015524021E-4 8.844628817730425E-4 0.0 0.12191740117288712 1.0720762203309607E-4 48-49 1.697454015524021E-4 8.844628817730425E-4 0.0 0.14006675818624 1.1614159053585407E-4 50-51 1.697454015524021E-4 9.291327242868326E-4 0.0 0.1574299259713502 1.1614159053585407E-4 52-53 1.697454015524021E-4 9.291327242868326E-4 0.0 0.18458025625123176 1.2954254328999108E-4 54-55 1.697454015524021E-4 9.425336770409696E-4 0.0 0.24655519575486406 1.3400952754137008E-4 56-57 1.697454015524021E-4 9.648685982978646E-4 0.0 0.3156013713284293 1.474104802955071E-4 58-59 1.697454015524021E-4 9.916705038061386E-4 0.0 0.3923084248931095 1.518774645468861E-4 60-61 1.831463543065391E-4 9.916705038061386E-4 0.0 0.4130754346777705 1.518774645468861E-4 62-63 1.876133385579181E-4 9.916705038061386E-4 0.0 0.4296702811716435 1.518774645468861E-4 64-65 1.920803228092971E-4 0.0010720762203309607 0.0 0.4384791741153629 1.518774645468861E-4 66-67 2.010142913120551E-4 0.0010810101888337185 0.0 0.4441567110988656 1.518774645468861E-4 68-69 2.054812755634341E-4 0.0011167460628447507 0.0 0.4502809465075063 1.518774645468861E-4 70-71 2.054812755634341E-4 0.0011212130470961298 0.0 0.4560076203177741 1.518774645468861E-4 72-73 2.2334921256895015E-4 0.0011256800313475088 0.0 0.4606666848919624 1.786793700551601E-4 74-75 2.2334921256895015E-4 0.0011301470155988878 0.0 0.4643564138836015 1.786793700551601E-4 76-77 2.2334921256895015E-4 0.0011926847951181938 0.0 0.46729568952100886 1.786793700551601E-4 78-79 2.4121714957446615E-4 0.0012373546376319836 0.0 0.4704047105599687 1.786793700551601E-4 80-81 2.4121714957446615E-4 0.0012418216218833627 0.0 0.47171800392987406 2.099482598148131E-4 82-83 2.4121714957446615E-4 0.0012462886061347417 0.0 0.4722183061660285 2.4121714957446615E-4 84-85 2.4121714957446615E-4 0.0012686235273916368 0.0 0.4726784055439206 2.4121714957446615E-4 86-87 2.456841338258452E-4 0.0012998924171512898 0.0 0.47282581602421603 2.456841338258452E-4 88-89 2.5015111807722416E-4 0.0013668971809219748 0.0 0.4728570849139757 2.5461810232860313E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13065 0.0 48.38983 1 GTATCAA 22190 0.0 32.808872 1 TCAACGC 26155 0.0 27.801468 4 CTTATAC 14590 0.0 27.47093 1 ATCAACG 26555 0.0 27.351456 3 CAACGCA 27010 0.0 26.953083 5 TATCAAC 27755 0.0 26.276783 2 AACGCAG 28055 0.0 26.133783 6 GTGGTAT 6795 0.0 23.795311 1 TATACAC 19380 0.0 23.197329 3 TGGTATC 6515 0.0 22.651329 2 ACGCAGA 32760 0.0 22.302143 7 CGCAGAG 33895 0.0 21.618015 8 TTATACA 19640 0.0 21.343893 2 GTACATG 30525 0.0 19.940601 1 TACATGG 31175 0.0 19.360188 2 ACATGGG 30970 0.0 19.07399 3 GAGTACT 23060 0.0 18.548058 12-13 GCAGAGT 39965 0.0 18.334608 9 TACACAT 24560 0.0 18.077673 5 >>END_MODULE