##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139504_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14102676 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.757669182784884 28.0 18.0 32.0 18.0 33.0 2 27.957684626662346 29.0 25.0 32.0 18.0 33.0 3 30.048462575471493 31.0 29.0 33.0 25.0 33.0 4 30.154445510908708 31.0 29.0 33.0 25.0 33.0 5 31.69054468811451 33.0 32.0 33.0 30.0 33.0 6 35.564043944567686 38.0 36.0 38.0 29.0 38.0 7 35.94592090182034 38.0 36.0 38.0 31.0 38.0 8 36.40061999580789 38.0 37.0 38.0 33.0 38.0 9 36.59834488149625 38.0 38.0 38.0 34.0 38.0 10-11 36.74629155487937 38.0 38.0 38.0 34.0 38.0 12-13 36.80559132890808 38.0 38.0 38.0 34.5 38.0 14-15 36.828786820316935 38.0 38.0 38.0 35.0 38.0 16-17 36.852580566978915 38.0 38.0 38.0 35.0 38.0 18-19 36.86274207817013 38.0 38.0 38.0 35.0 38.0 20-21 36.875539905985576 38.0 38.0 38.0 35.0 38.0 22-23 36.892572301920936 38.0 38.0 38.0 35.0 38.0 24-25 36.90443936679418 38.0 38.0 38.0 35.0 38.0 26-27 36.862667931596974 38.0 38.0 38.0 35.0 38.0 28-29 36.84999121896758 38.0 38.0 38.0 35.0 38.0 30-31 36.829894224943914 38.0 38.0 38.0 35.0 38.0 32-33 36.81341317173744 38.0 38.0 38.0 35.0 38.0 34-35 36.797208094505585 38.0 38.0 38.0 35.0 38.0 36-37 36.77787128807363 38.0 38.0 38.0 35.0 38.0 38-39 36.766524972801626 38.0 38.0 38.0 35.0 38.0 40-41 36.7576269425259 38.0 38.0 38.0 35.0 38.0 42-43 36.71475452082872 38.0 38.0 38.0 34.5 38.0 44-45 36.67645123444828 38.0 38.0 38.0 34.0 38.0 46-47 36.64522806022124 38.0 38.0 38.0 34.0 38.0 48-49 36.60790464088177 38.0 38.0 38.0 34.0 38.0 50-51 36.58915881783396 38.0 38.0 38.0 34.0 38.0 52-53 36.5621135255401 38.0 38.0 38.0 34.0 38.0 54-55 36.495695719986315 38.0 38.0 38.0 34.0 38.0 56-57 36.50508625552861 38.0 38.0 38.0 34.0 38.0 58-59 36.501249087691924 38.0 38.0 38.0 34.0 38.0 60-61 36.460750748909945 38.0 38.0 38.0 34.0 38.0 62-63 36.465970577781846 38.0 38.0 38.0 34.0 38.0 64-65 36.48935665350095 38.0 38.0 38.0 34.0 38.0 66-67 36.47095731258711 38.0 38.0 38.0 34.0 38.0 68-69 36.45623316774595 38.0 38.0 38.0 34.0 38.0 70-71 36.456673329990394 38.0 38.0 38.0 34.0 38.0 72-73 36.44640982833227 38.0 38.0 38.0 34.0 38.0 74-75 36.43805487045058 38.0 38.0 38.0 34.0 38.0 76-77 36.40448518638546 38.0 38.0 38.0 34.0 38.0 78-79 36.40010267249432 38.0 38.0 38.0 34.0 38.0 80-81 36.3910346673938 38.0 38.0 38.0 34.0 38.0 82-83 36.36199427152081 38.0 38.0 38.0 33.5 38.0 84-85 36.32080177884136 38.0 38.0 38.0 33.0 38.0 86-87 36.33661876687187 38.0 38.0 38.0 33.0 38.0 88-89 36.33277256468553 38.0 38.0 38.0 33.0 38.0 90-91 36.32278912610364 38.0 38.0 38.0 33.0 38.0 92-93 36.309217800676635 38.0 37.0 38.0 33.0 38.0 94-95 36.29415146826351 38.0 37.0 38.0 33.0 38.0 96-97 36.289978113573184 38.0 37.0 38.0 33.0 38.0 98-99 36.33179885927795 38.0 37.0 38.0 33.5 38.0 100-101 35.819803157559534 38.0 36.0 38.0 31.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 36.0 19 87.0 20 134.0 21 592.0 22 2531.0 23 7800.0 24 17979.0 25 35192.0 26 59264.0 27 91641.0 28 130980.0 29 176221.0 30 230106.0 31 295172.0 32 376869.0 33 498558.0 34 697916.0 35 1121520.0 36 2659350.0 37 7700726.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 39.27213530254826 23.400700689713073 13.729139065522034 23.598024942216643 2 15.543815939613163 20.993398699651046 40.989802219096575 22.47298314163922 3 18.455528503106066 26.827024227010828 29.447899570529067 25.26954769935404 4 13.430642524865494 18.460141890801435 37.93386446657358 30.175351117759497 5 13.982650528765351 37.28287532684472 35.42355747944364 13.31091666494629 6 30.473968202914115 37.97736684867468 18.277970790791763 13.270694157619447 7 26.911538556175596 32.653307237629434 22.67733072461386 17.757823481581106 8 24.309365116237515 37.5406128595736 20.433902048093564 17.716119976095317 9 25.236706849111474 17.355954288391793 21.167039503708374 36.240299358788356 10-11 24.381958586510766 26.915874934511542 28.51946072218708 20.182705756790618 12-13 25.167274110504778 24.246948743874878 28.854521257331633 21.731255888288715 14-15 22.23378149659997 25.74620782882791 26.374294433402802 25.645716241169314 16-17 21.820500591518943 28.905365194520527 27.107752457760498 22.16638175620003 18-19 21.831012780836772 28.047825816887517 28.840944796576196 21.280216605699515 20-21 22.594973252002355 27.104105791490596 28.844557765907116 21.456363190599937 22-23 22.37424789273813 26.966179709243814 28.694679057408063 21.964893340609994 24-25 22.134518398743307 27.151114456149124 28.744527449848807 21.969839695258763 26-27 22.072178960555586 27.27979920045465 28.702266442413315 21.94575539657644 28-29 22.01124088795387 27.279816867717795 28.759253954133555 21.94968829019478 30-31 22.3084382474183 27.130361897304823 28.645938171065062 21.915261684211814 32-33 22.0520448234639 27.305316100058697 28.641557669786028 22.001081406691377 34-35 22.206502472871506 27.272937517809186 28.657742706014094 21.862817303305214 36-37 22.193847546533668 27.20337127414395 28.580056113838914 22.022725065483467 38-39 22.074926507303903 27.32202427558745 28.677269943547266 21.92577927356138 40-41 22.31574278641863 27.18923664182824 28.539506264130498 21.955514307622625 42-43 22.2016464056688 27.260488826280117 28.38406560386819 22.153799164182892 44-45 22.22352042398066 27.34197132465142 28.302280764857734 22.132227486510185 46-47 22.29437172295489 27.338089826289536 28.059379504295773 22.308158946459802 48-49 22.24462971949444 27.413784856387657 28.053549645820443 22.28803577829746 50-51 22.217100983021908 27.539043826133213 27.947564597893283 22.296290592951596 52-53 22.353458148070693 27.524983886129796 27.816697839530825 22.30486012626869 54-55 22.344523779924636 27.43516865936045 27.8473334602998 22.372974100415114 56-57 22.324881298185783 27.47112287763494 27.88047684609274 22.32351897808654 58-59 22.282220410907076 27.489952571440295 27.953014759114897 22.27481225853773 60-61 22.3513866664138 27.481888519377335 27.9123272251724 22.254397589036465 62-63 22.352702074915083 27.56258305826462 27.8847138192922 22.200001047528094 64-65 22.230590844468534 27.535322454151085 27.85696961666002 22.377117084720357 66-67 22.297603305458143 27.61959794584496 27.70303457070813 22.37976417798877 68-69 22.219246580213646 27.575226944780283 27.797008956745845 22.408517518260222 70-71 22.24829838819363 27.371173083843846 27.819547974866417 22.560980553096112 72-73 22.306155614919632 27.385311271300505 27.75441601676796 22.554117097011908 74-75 22.235181199025906 27.473137022022097 27.732271843058264 22.55940993589373 76-77 22.420352374231108 27.434787986087755 27.629041354612276 22.51581828506886 78-79 22.360787470133065 27.40639186207479 27.59419953703364 22.638621130758512 80-81 22.349238167699387 27.494620945589276 27.582686581753723 22.573454304957608 82-83 22.413979395893147 27.480655868597008 27.653160115444276 22.45220462006557 84-85 22.54062041918758 27.492211971819785 27.55214072255755 22.415026886435083 86-87 22.41529114791027 27.540064119678675 27.60611678666858 22.43852794574248 88-89 22.44568616506614 27.56289853185044 27.573025686096713 22.41838961698671 90-91 22.48803616716286 27.60497582679412 27.558191323564017 22.348796682479 92-93 22.574983950555847 27.527379261680494 27.571091517660644 22.326545270103015 94-95 22.39030531418324 27.589763666819977 27.60632439213881 22.41360662685797 96-97 22.43026297640047 27.57909374444658 27.607712916294552 22.382930362858396 98-99 22.63946453305565 28.139184880242325 27.700040254640378 21.521310332061642 100-101 23.283477212866792 30.635048622836347 25.021366986214648 21.060107178082216 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1939.0 1 2004.5 2 2895.5 3 3956.0 4 5178.5 5 7559.5 6 9664.5 7 12041.5 8 14389.0 9 15469.0 10 15281.5 11 14771.0 12 16209.5 13 20648.5 14 29894.5 15 41182.0 16 49546.5 17 53941.5 18 54052.0 19 50748.5 20 46145.5 21 42262.5 22 41939.0 23 46949.0 24 57364.5 25 74197.0 26 96428.0 27 121918.0 28 152095.5 29 186510.0 30 220826.0 31 255228.5 32 292147.0 33 328540.5 34 363626.0 35 397645.5 36 433470.0 37 466649.5 38 492155.5 39 512718.5 40 532668.5 41 550892.5 42 560519.5 43 569418.5 44 581668.0 45 593593.5 46 599175.5 47 598280.5 48 595575.5 49 589113.5 50 579223.0 51 566132.5 52 545054.0 53 516716.0 54 486761.0 55 454569.0 56 419263.5 57 379569.5 58 338843.0 59 293974.0 60 242817.5 61 195231.5 62 153942.5 63 118643.0 64 89293.0 65 66105.0 66 49011.0 67 36725.0 68 27374.0 69 20177.5 70 14720.5 71 10491.0 72 7256.5 73 4739.0 74 2982.5 75 1835.0 76 1155.5 77 702.5 78 446.0 79 300.5 80 204.5 81 134.0 82 84.5 83 53.5 84 36.5 85 27.5 86 21.0 87 17.0 88 12.0 89 8.0 90 5.0 91 2.5 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.003127066097242821 4 0.0 5 0.04903324730710682 6 0.0 7 0.0016096235920048082 8 0.0 9 0.0 10-11 3.545426414107507E-6 12-13 3.545426414107507E-6 14-15 2.127255848464504E-5 16-17 0.0 18-19 0.0 20-21 6.0273146554652214E-5 22-23 3.5456686554913097E-6 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 3.6845838522302067E-6 46-47 6.135053726338677E-4 48-49 1.800766698931654E-4 50-51 6.242811308190568E-4 52-53 0.0012582100589318902 54-55 0.002976288085638446 56-57 0.002871626380818836 58-59 0.006670403132639758 60-61 0.005905558125603392 62-63 0.006875914267466558 64-65 0.003968769941368626 66-67 0.006660921319259654 68-69 0.0068057914432455065 70-71 0.0035472350352256485 72-73 0.0027293879179344093 74-75 0.0037223883044571575 76-77 0.002344068560874339 78-79 0.0 80-81 5.612819749388462E-4 82-83 1.9629484322977777E-4 84-85 0.0 86-87 0.0 88-89 0.0 90-91 1.3641120667170843E-5 92-93 7.312918638720893E-4 94-95 1.1164521458140465E-4 96-97 4.712526016678006E-6 98-99 4.8622585365943795E-6 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 111.0 20-21 591.0 22-23 1220.0 24-25 1500.0 26-27 3744.0 28-29 9521.0 30-31 28392.0 32-33 36772.0 34-35 50390.0 36-37 80465.0 38-39 93418.0 40-41 93268.0 42-43 103628.0 44-45 121300.0 46-47 121559.0 48-49 114821.0 50-51 105314.0 52-53 92591.0 54-55 99229.0 56-57 99735.0 58-59 109379.0 60-61 108234.0 62-63 103180.0 64-65 109952.0 66-67 116169.0 68-69 117691.0 70-71 117447.0 72-73 108516.0 74-75 109367.0 76-77 114197.0 78-79 120177.0 80-81 119461.0 82-83 114249.0 84-85 111841.0 86-87 116620.0 88-89 121120.0 90-91 126116.0 92-93 121643.0 94-95 130140.0 96-97 208299.0 98-99 1169866.0 100-101 9271443.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.11289474888717 #Duplication Level Percentage of deduplicated Percentage of total 1 88.00352622868489 72.26224286746935 2 8.105727283849632 13.31169462643856 3 2.0704053547189503 5.100209309387087 4 0.8045493749502494 2.642555125822912 5 0.38105986875019465 1.5644964447854748 6 0.20908045966462188 1.0300921067094029 7 0.12038638854656278 0.6919692396345782 8 0.07659830031972427 0.5031766537677737 9 0.05182734537902792 0.38301240206001097 >10 0.17194147674901689 2.136213010238704 >50 0.003760624738460967 0.2037246006723079 >100 0.0010889844264219835 0.14056028891714403 >500 4.830922223101414E-5 0.03005332409672356 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 7.090852828215014E-6 0.0 3 0.0 0.0 0.0 7.090852828215014E-6 0.0 4 0.0 3.545426414107507E-5 0.0 2.127255848464504E-5 0.0 5 0.0 4.254511696929008E-5 0.0 5.672682262572011E-5 0.0 6 4.96359697975051E-5 4.254511696929008E-5 0.0 5.672682262572011E-5 0.0 7 4.96359697975051E-5 4.254511696929008E-5 0.0 7.090852828215014E-5 0.0 8 4.96359697975051E-5 4.254511696929008E-5 0.0 7.799938111036516E-5 7.090852828215014E-6 9 4.96359697975051E-5 7.799938111036516E-5 0.0 8.509023393858016E-5 7.090852828215014E-6 10-11 4.96359697975051E-5 9.218108676679518E-5 0.0 1.2054449807965523E-4 7.090852828215014E-6 12-13 4.96359697975051E-5 9.218108676679518E-5 0.0 1.2763535090787025E-4 7.090852828215014E-6 14-15 4.96359697975051E-5 1.8790759994769787E-4 0.0 1.4181705656430028E-4 1.063627924232252E-5 16-17 6.736310186804263E-5 2.056347320182354E-4 0.0 1.453624829784078E-4 2.127255848464504E-5 18-19 7.090852828215014E-5 2.2336186408877294E-4 0.0 1.559987622207303E-4 2.8363411312860056E-5 20-21 7.090852828215014E-5 2.552707018157405E-4 0.0 1.7727132070537535E-4 3.545426414107507E-5 22-23 7.090852828215014E-5 2.8363411312860056E-4 0.0 1.8790759994769787E-4 3.545426414107507E-5 24-25 7.090852828215014E-5 3.119975244414606E-4 0.0 2.3399814333109546E-4 3.545426414107507E-5 26-27 7.090852828215014E-5 3.2972465651199813E-4 0.0 3.1554295085556815E-4 3.545426414107507E-5 28-29 7.090852828215014E-5 3.3681550934021315E-4 0.0 5.885407847418462E-4 3.545426414107507E-5 30-31 7.090852828215014E-5 3.7936062630950326E-4 0.0 0.0017266226636703558 3.545426414107507E-5 32-33 7.090852828215014E-5 3.899969055518258E-4 0.0 0.004722507983591199 4.609054338339759E-5 34-35 7.090852828215014E-5 4.573600074198684E-4 0.0 0.008597659054210704 4.96359697975051E-5 36-37 7.090852828215014E-5 5.24723109287911E-4 0.0 0.014465339769558628 4.96359697975051E-5 38-39 7.090852828215014E-5 5.530865206007711E-4 0.0 0.025636978400411382 5.672682262572011E-5 40-41 7.090852828215014E-5 6.346313281252437E-4 0.0 0.05954898205134969 5.672682262572011E-5 42-43 7.090852828215014E-5 6.771764450945337E-4 0.0 0.07030580579175186 6.0272249039827614E-5 44-45 7.799938111036516E-5 7.551758262048991E-4 0.0 0.08540223146302163 6.736310186804263E-5 46-47 7.799938111036516E-5 8.296297809011566E-4 0.0 0.10222882522437586 7.799938111036516E-5 48-49 7.799938111036516E-5 8.402660601434791E-4 0.0 0.11724016066170703 9.218108676679518E-5 50-51 8.509023393858016E-5 9.537197053949193E-4 0.0 0.13265567471024647 9.218108676679518E-5 52-53 8.509023393858016E-5 9.71446837465457E-4 0.0 0.15772538488440066 1.1345364525144022E-4 54-55 8.509023393858016E-5 9.749922638795644E-4 0.0 0.21617528474737702 1.3118077732197776E-4 56-57 8.509023393858016E-5 9.85628543121887E-4 0.0 0.2810069521557469 1.3827163015019277E-4 58-59 8.509023393858016E-5 9.85628543121887E-4 0.0 0.3535463765883865 1.453624829784078E-4 60-61 9.572651318090269E-5 0.001013991954434747 0.0 0.37309585783577526 1.5599876222073032E-4 62-63 1.063627924232252E-4 0.0010388099393334996 0.0 0.3849482183381367 1.630896150489453E-4 64-65 1.063627924232252E-4 0.0011558090109990474 0.0 0.3937018761545681 1.630896150489453E-4 66-67 1.1345364525144022E-4 0.0011699907166554772 0.0 0.3995837385755725 1.6663504146305282E-4 68-69 1.1345364525144022E-4 0.0011912632751401224 0.0 0.4053096022343561 1.7018046787716033E-4 70-71 1.1699907166554773E-4 0.00122317211286709 0.0 0.4105249244895082 1.7727132070537535E-4 72-73 1.3472620373608526E-4 0.0012408992449376276 0.0 0.4147085276581551 1.9145302636180538E-4 74-75 1.3472620373608526E-4 0.0012905352147351327 0.0 0.4181617729854958 1.9145302636180538E-4 76-77 1.3472620373608526E-4 0.0013472620373608526 0.0 0.4211115677620333 1.9145302636180538E-4 78-79 1.3472620373608526E-4 0.0013685345958454978 0.0 0.42370681989715997 1.9145302636180538E-4 80-81 1.3472620373608526E-4 0.0013685345958454978 0.0 0.4251001724779042 1.949984527759129E-4 82-83 1.3472620373608526E-4 0.001372080022259605 0.0 0.42558235047022286 1.985438791900204E-4 84-85 1.3472620373608526E-4 0.0013898071543301427 0.0 0.426050346756885 1.985438791900204E-4 86-87 1.3472620373608526E-4 0.0013898071543301427 0.0 0.4262311635040045 2.056347320182354E-4 88-89 1.453624829784078E-4 0.0014571702561981853 0.0 0.42626661776814556 2.1627101126055792E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 18260 0.0 47.367252 1 GTATCAA 31965 0.0 35.458794 1 TCAACGC 38500 0.0 29.73008 4 ATCAACG 38775 0.0 29.508657 3 CAACGCA 39290 0.0 29.176111 5 TATCAAC 39775 0.0 28.874952 2 AACGCAG 40705 0.0 28.23273 6 ACGCAGA 46955 0.0 24.419823 7 CGCAGAG 48460 0.0 23.661177 8 GTGGTAT 9345 0.0 21.642202 1 TGGTATC 9150 0.0 20.927715 2 GCAGAGT 56775 0.0 20.173143 9 GAGTACT 32715 0.0 19.45036 12-13 GTACATG 40340 0.0 18.742123 1 CAGAGTA 55200 0.0 18.387915 10-11 TACATGG 41030 0.0 18.353523 2 ACATGGG 41000 0.0 18.09407 3 AGAGTAC 51370 0.0 17.565296 10-11 GTACTTT 36150 0.0 17.477467 14-15 AGTACTT 35915 0.0 15.717483 12-13 >>END_MODULE