##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139501_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12006982 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.92846528794663 31.0 25.0 33.0 18.0 33.0 2 30.872120654465878 33.0 30.0 33.0 27.0 33.0 3 31.280430502852425 33.0 31.0 33.0 28.0 34.0 4 31.79852289276356 33.0 32.0 33.0 29.0 34.0 5 32.15627282526117 33.0 33.0 34.0 31.0 34.0 6 35.4980662084777 38.0 36.0 38.0 29.0 38.0 7 35.78505073131616 38.0 36.0 38.0 31.0 38.0 8 36.05738552785371 38.0 37.0 38.0 32.0 38.0 9 36.54554633295861 38.0 37.0 38.0 34.0 38.0 10-11 36.646668163573494 38.0 38.0 38.0 34.0 38.0 12-13 36.71645351846117 38.0 38.0 38.0 34.0 38.0 14-15 36.70535497596315 38.0 38.0 38.0 34.0 38.0 16-17 36.72515508060227 38.0 38.0 38.0 34.0 38.0 18-19 36.758575635409464 38.0 38.0 38.0 34.5 38.0 20-21 36.782197137258336 38.0 38.0 38.0 35.0 38.0 22-23 36.80773948327662 38.0 38.0 38.0 35.0 38.0 24-25 36.80498772721029 38.0 38.0 38.0 35.0 38.0 26-27 36.772490016657045 38.0 38.0 38.0 35.0 38.0 28-29 36.76701584452235 38.0 38.0 38.0 35.0 38.0 30-31 36.75075500508676 38.0 38.0 38.0 35.0 38.0 32-33 36.73476637984386 38.0 38.0 38.0 34.5 38.0 34-35 36.70797603491556 38.0 38.0 38.0 34.0 38.0 36-37 36.68373162498142 38.0 38.0 38.0 34.0 38.0 38-39 36.67540399547579 38.0 38.0 38.0 34.0 38.0 40-41 36.66146962439171 38.0 38.0 38.0 34.0 38.0 42-43 36.62508631608986 38.0 38.0 38.0 34.0 38.0 44-45 36.579449186434914 38.0 38.0 38.0 34.0 38.0 46-47 36.538378204793325 38.0 38.0 38.0 34.0 38.0 48-49 36.495576411824985 38.0 38.0 38.0 34.0 38.0 50-51 36.47633603486855 38.0 38.0 38.0 34.0 38.0 52-53 36.44424974182366 38.0 38.0 38.0 34.0 38.0 54-55 36.37184437141744 38.0 38.0 38.0 34.0 38.0 56-57 36.37861753544399 38.0 38.0 38.0 34.0 38.0 58-59 36.37526667804441 38.0 38.0 38.0 34.0 38.0 60-61 36.33193876991483 38.0 38.0 38.0 33.5 38.0 62-63 36.33452313507773 38.0 38.0 38.0 33.0 38.0 64-65 36.353172465244356 38.0 38.0 38.0 34.0 38.0 66-67 36.33318911074278 38.0 38.0 38.0 33.0 38.0 68-69 36.31897727066328 38.0 38.0 38.0 33.0 38.0 70-71 36.320319052716115 38.0 38.0 38.0 33.0 38.0 72-73 36.3074080696615 38.0 38.0 38.0 33.0 38.0 74-75 36.29325548803739 38.0 37.0 38.0 33.0 38.0 76-77 36.25528730198138 38.0 37.0 38.0 33.0 38.0 78-79 36.25076559707796 38.0 37.0 38.0 33.0 38.0 80-81 36.24137888996356 38.0 37.0 38.0 33.0 38.0 82-83 36.21275315053196 38.0 37.0 38.0 33.0 38.0 84-85 36.166001926536225 38.0 37.0 38.0 33.0 38.0 86-87 36.177733365495 38.0 37.0 38.0 33.0 38.0 88-89 36.17380154451017 38.0 37.0 38.0 33.0 38.0 90-91 36.166073996832964 38.0 37.0 38.0 33.0 38.0 92-93 36.15210296274425 38.0 37.0 38.0 33.0 38.0 94-95 36.13488609748646 38.0 37.0 38.0 33.0 38.0 96-97 36.125860516932946 38.0 37.0 38.0 33.0 38.0 98-99 36.16951309551588 38.0 37.0 38.0 33.0 38.0 100-101 35.63981939462646 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 8.0 18 16.0 19 32.0 20 110.0 21 612.0 22 2668.0 23 8207.0 24 18434.0 25 34472.0 26 56878.0 27 84353.0 28 120325.0 29 160964.0 30 207522.0 31 264398.0 32 337015.0 33 437739.0 34 603408.0 35 934593.0 36 1987543.0 37 6747685.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 40.39318123405199 20.02137589612444 15.969175268189792 23.616267601633783 2 14.507683945890815 21.579194505330314 41.09803779167821 22.81508375710066 3 18.12811740079225 25.944220498114497 30.99953300672955 24.928129094363708 4 12.836073211403164 18.231925391409764 37.76922460614999 31.162776791037082 5 13.771126083108722 37.171490662740176 35.174276879706966 13.883106374444129 6 30.28447948035568 37.79894064969865 18.298445021405048 13.618134848540626 7 26.760456280097877 32.64471551622183 22.709104780180333 17.885723423499957 8 24.47688353326423 37.084239819798185 20.528447531611192 17.910429115326398 9 25.363909098889298 17.28440169228204 21.18048482124817 36.17120438758049 10-11 24.403349184944993 26.877997058544523 28.4026351003637 20.316018656146788 12-13 25.206517341326908 24.338930465624085 28.72990481704728 21.72464737600173 14-15 22.273177768264794 25.727664241965925 26.467675468769 25.53148252100029 16-17 21.747933827168225 28.82332129755837 27.172706680163262 22.256038195110143 18-19 21.812804416630257 27.849579519649488 29.106235855104973 21.23138020861529 20-21 22.601039482650663 26.94285843736794 29.089385780089223 21.36671629989218 22-23 22.39670401369849 26.7286018282614 28.989555344281502 21.88513881375861 24-25 22.128125558500813 26.967671125065905 29.000521416672314 21.903681899760965 26-27 21.98610707969409 27.066354865488044 29.021607858336136 21.92593019648173 28-29 21.982060942554586 27.007942460863095 29.080105833912967 21.929890762669356 30-31 22.180703354755916 26.94610513656861 28.960177638122648 21.913013870552824 32-33 21.97835113089485 27.13919387581059 28.90930852042233 21.973146472872234 34-35 22.16351814212074 27.096336320146957 28.906081693045216 21.834063844687087 36-37 22.1217838524583 26.985275909536266 28.881792370301046 22.01114786770438 38-39 22.034241997416682 27.15475207272079 28.928019992458793 21.88298593740374 40-41 22.220941116146484 26.97470819648969 28.849987577389918 21.954363109973908 42-43 22.090218632363616 27.10383044806993 28.65465434189597 22.15129657767048 44-45 22.1075772476507 27.17861121509405 28.556011178101205 22.15780035915405 46-47 22.273299297009405 27.165173778343448 28.299509471033364 22.26201745361378 48-49 22.185991436917345 27.2899547180471 28.250716799568877 22.27333704546668 50-51 22.18912690624782 27.422162883181567 28.112931087236152 22.27577912333446 52-53 22.375121877535648 27.348784796424784 27.96098542002471 22.31510790601486 54-55 22.337354595715787 27.28126006977479 27.975077962959343 22.406307371550078 56-57 22.255399150468648 27.357463107978475 28.058977342050895 22.328160399501982 58-59 22.2447769271326 27.29941016534065 28.075329900839492 22.38048300668726 60-61 22.324292252392954 27.33241563863845 28.055837611176926 22.28745449779167 62-63 22.29826293864127 27.424286244259022 28.054875500575054 22.22257531652465 64-65 22.25812194632659 27.32227657636445 28.003666152831343 22.41593532447762 66-67 22.297521371923686 27.41341009946551 27.872986200336356 22.41608232827445 68-69 22.225140630083253 27.391374376619577 27.95357515270409 22.429909840593087 70-71 22.218936388446153 27.20912069563466 28.002522762811427 22.569420153107764 72-73 22.295242511519113 27.27414231964971 27.84641194685195 22.58420322197923 74-75 22.189403823148428 27.39858638200443 27.866364625370636 22.5456451694765 76-77 22.411375875737686 27.310027450810736 27.765759021500212 22.512837651951358 78-79 22.348542377578944 27.280054335702935 27.709898698468745 22.66150458824937 80-81 22.376988480803696 27.413818186226667 27.658416731829632 22.55077660114 82-83 22.41046022255936 27.38485657681497 27.725017038645188 22.479666161980482 84-85 22.427235365258568 27.46108509330047 27.640388835416886 22.471290706024078 86-87 22.409269279189644 27.422468032223918 27.719438022978366 22.448824665608072 88-89 22.416908072454838 27.407162640903802 27.733803130652458 22.4421261559889 90-91 22.48218177339951 27.413557365879065 27.695959247018436 22.408301613702985 92-93 22.559278362032387 27.431404945863314 27.655721603780385 22.35359508832391 94-95 22.399736862573114 27.44825868077909 27.690965811088763 22.46103864555903 96-97 22.462591875862998 27.469472130401783 27.687876263488885 22.380059730246334 98-99 22.65885763220555 28.025634851476305 27.788431242768606 21.527076273549536 100-101 23.296758042271566 30.49139407596375 25.139780662691148 21.07206721907353 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3666.0 1 3331.5 2 3640.0 3 4488.0 4 5397.0 5 7449.5 6 9689.0 7 13793.5 8 18021.0 9 19220.0 10 18067.5 11 16509.5 12 17468.5 13 21434.5 14 30145.5 15 41155.0 16 49295.0 17 53183.5 18 52878.0 19 49305.5 20 44329.0 21 40559.5 22 40171.5 23 44841.0 24 54627.5 25 69552.5 26 88963.5 27 110294.5 28 134988.0 29 163045.0 30 190488.5 31 218784.0 32 248903.5 33 279682.5 34 307425.5 35 331881.5 36 361317.5 37 387535.5 38 406935.5 39 425215.5 40 440060.5 41 453118.5 42 460636.0 43 466987.0 44 476798.5 45 486414.0 46 489641.5 47 487211.5 48 485914.5 49 484121.0 50 479416.0 51 471193.5 52 457146.5 53 437041.0 54 414625.5 55 388790.5 56 359556.5 57 327779.5 58 295194.0 59 256487.5 60 213647.0 61 174329.5 62 139163.0 63 108822.0 64 82262.0 65 61292.5 66 45822.5 67 35218.5 68 27347.0 69 20718.0 70 15414.5 71 11113.0 72 7864.5 73 5369.5 74 3542.5 75 2240.5 76 1412.0 77 874.0 78 530.0 79 332.5 80 226.5 81 151.0 82 105.0 83 73.5 84 46.0 85 27.0 86 17.0 87 11.5 88 11.0 89 9.0 90 6.5 91 4.0 92 2.5 93 2.5 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.003206467703541156 4 0.0 5 0.04799707370261736 6 0.0 7 0.0026817729884162397 8 0.0 9 0.0 10-11 8.328487541665341E-6 12-13 0.0 14-15 1.6656975083330683E-5 16-17 0.0 18-19 0.0 20-21 7.079350903477173E-5 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 1.297084323062717E-5 46-47 8.288988698007536E-4 48-49 1.8485808906647589E-4 50-51 7.81004306750624E-4 52-53 0.0014349503480358078 54-55 0.0031601043932833646 56-57 0.0028075020991634235 58-59 0.0065037787731651985 60-61 0.0058758135063799585 62-63 0.0066386613336861565 64-65 0.0038359362119872306 66-67 0.006402543250833452 68-69 0.00666732513258701 70-71 0.0032546991283424636 72-73 0.0026776052917255825 74-75 0.003609065442801192 76-77 0.0022917224026259278 78-79 0.0 80-81 5.404961158282166E-4 82-83 1.8373224495795337E-4 84-85 0.0 86-87 0.0 88-89 0.0 90-91 2.6610048997615418E-5 92-93 7.21426024517825E-4 94-95 8.714595051286481E-5 96-97 5.51943697327323E-6 98-99 1.139306348140917E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 126.0 20-21 603.0 22-23 1179.0 24-25 1536.0 26-27 3572.0 28-29 8585.0 30-31 23935.0 32-33 30861.0 34-35 42578.0 36-37 65951.0 38-39 74692.0 40-41 76393.0 42-43 87365.0 44-45 102474.0 46-47 102708.0 48-49 95144.0 50-51 85434.0 52-53 76387.0 54-55 82258.0 56-57 82810.0 58-59 90424.0 60-61 88131.0 62-63 85865.0 64-65 92032.0 66-67 97196.0 68-69 99062.0 70-71 97291.0 72-73 92711.0 74-75 93799.0 76-77 98510.0 78-79 103101.0 80-81 102872.0 82-83 96947.0 84-85 96599.0 86-87 100765.0 88-89 105100.0 90-91 108350.0 92-93 106273.0 94-95 113884.0 96-97 180415.0 98-99 1002556.0 100-101 7910508.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.59203396481884 #Duplication Level Percentage of deduplicated Percentage of total 1 88.55353795723772 73.13816814669053 2 7.703305968645576 12.72463416407534 3 2.010715151673038 4.982071623016662 4 0.7598633846799017 2.5103464990441857 5 0.3665386086321687 1.5136584606782757 6 0.18534352238793603 0.9184739097734145 7 0.11249699888753065 0.6503949167141384 8 0.07781450824532547 0.5141486806362878 9 0.049266443414558415 0.3662114191038931 >10 0.17581455182767444 2.2478627568776437 >50 0.0038731379305668675 0.21644832501129976 >100 0.001372650034817472 0.17410283176060368 >500 3.807771684065684E-5 0.026165660064327613 >1k 1.9038686337685093E-5 0.01731260655341029 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.328487541665341E-6 2 0.0 2.4985462624996022E-5 0.0 0.0 8.328487541665341E-6 3 0.0 2.4985462624996022E-5 0.0 0.0 8.328487541665341E-6 4 0.0 4.9970925249992045E-5 0.0 1.6656975083330683E-5 2.4985462624996022E-5 5 0.0 5.829941279165739E-5 0.0 2.4985462624996022E-5 2.4985462624996022E-5 6 8.328487541665341E-6 5.829941279165739E-5 0.0 2.4985462624996022E-5 2.4985462624996022E-5 7 8.328487541665341E-6 5.829941279165739E-5 0.0 2.4985462624996022E-5 2.4985462624996022E-5 8 8.328487541665341E-6 7.495638787498807E-5 0.0 2.4985462624996022E-5 2.4985462624996022E-5 9 8.328487541665341E-6 1.9988370099996818E-4 0.0 4.16424377083267E-5 2.4985462624996022E-5 10-11 8.328487541665341E-6 1.9988370099996818E-4 0.0 5.4135169020824717E-5 2.4985462624996022E-5 12-13 8.328487541665341E-6 2.0821218854163352E-4 0.0 6.246365656249006E-5 2.4985462624996022E-5 14-15 8.328487541665341E-6 2.7900433264578897E-4 0.0 6.662790033332273E-5 3.331395016666136E-5 16-17 4.16424377083267E-5 2.831685764166216E-4 0.0 8.744911918748608E-5 4.9970925249992045E-5 18-19 4.16424377083267E-5 3.248110141249483E-4 0.0 9.994185049998409E-5 7.07921441041554E-5 20-21 4.16424377083267E-5 3.5812496429160964E-4 0.0 1.0410609427081676E-4 7.495638787498807E-5 22-23 4.16424377083267E-5 3.9976740199993636E-4 0.0 1.290915568958128E-4 8.32848754166534E-5 24-25 4.16424377083267E-5 4.497383272499284E-4 0.0 1.6240550706247416E-4 9.577760672915142E-5 26-27 4.16424377083267E-5 4.663953023332591E-4 0.0 2.8316857641662156E-4 9.994185049998409E-5 28-29 4.16424377083267E-5 4.663953023332591E-4 0.0 7.662208538332113E-4 9.994185049998409E-5 30-31 4.16424377083267E-5 5.246947151249165E-4 0.0 0.0022070491985413153 9.994185049998409E-5 32-33 4.16424377083267E-5 5.246947151249165E-4 0.0 0.005859090985561567 1.2492731312498012E-4 34-35 4.16424377083267E-5 6.121438343124026E-4 0.0 0.010693778003498296 1.2492731312498012E-4 36-37 4.16424377083267E-5 6.95428709729056E-4 0.0 0.017648065100788857 1.2492731312498012E-4 38-39 4.16424377083267E-5 7.287426598957174E-4 0.0 0.030594698984307632 1.2492731312498012E-4 40-41 4.16424377083267E-5 7.870420726873747E-4 0.0 0.06475399063644803 1.2492731312498012E-4 42-43 4.16424377083267E-5 8.203560228540361E-4 0.0 0.07741329169977934 1.290915568958128E-4 44-45 4.16424377083267E-5 9.119693858123548E-4 0.0 0.09415355165852668 1.3325580066664546E-4 46-47 4.16424377083267E-5 9.910900174581756E-4 0.0 0.11315499598483617 1.3742004443747813E-4 48-49 4.16424377083267E-5 9.99418504999841E-4 0.0 0.13022006695770844 1.415842882083108E-4 50-51 4.16424377083267E-5 0.0011410027932081518 0.0 0.1473101233932057 1.415842882083108E-4 52-53 4.16424377083267E-5 0.0011618240120623152 0.0 0.17341576759255573 1.4991277574997615E-4 54-55 4.16424377083267E-5 0.0011784809871456458 0.0 0.23379730226962944 1.582412632916415E-4 56-57 4.16424377083267E-5 0.0012159591810831398 0.0 0.29942578409795234 1.582412632916415E-4 58-59 4.16424377083267E-5 0.0012409446437081357 0.0 0.3717920123474825 1.665697508333068E-4 60-61 4.16424377083267E-5 0.0012659301063331317 0.0 0.3923633765753959 1.832267259166375E-4 62-63 4.16424377083267E-5 0.001286751325187295 0.0 0.40876216854493497 1.9988370099996818E-4 64-65 4.16424377083267E-5 0.0014907992699580961 0.0 0.4175862010953294 2.0821218854163352E-4 66-67 4.16424377083267E-5 0.0015074562450414267 0.0 0.4232828865738285 2.0821218854163352E-4 68-69 4.16424377083267E-5 0.00152827746389559 0.0 0.42926274062874414 2.0821218854163352E-4 70-71 4.5806681479159373E-5 0.0015324417076664227 0.0 0.43494693337593077 2.0821218854163352E-4 72-73 6.662790033332273E-5 0.0015324417076664227 0.0 0.4395067803049926 2.1654067608329887E-4 74-75 6.662790033332273E-5 0.0015615914140622515 0.0 0.4427382334711587 2.1654067608329887E-4 76-77 6.662790033332273E-5 0.0016532047770205702 0.0 0.4458281023491165 2.1654067608329887E-4 78-79 6.662790033332273E-5 0.0016906829709580642 0.0 0.44873890874492856 2.1654067608329887E-4 80-81 6.662790033332273E-5 0.0016906829709580642 0.0 0.45002149582634504 2.248691636249642E-4 82-83 6.662790033332273E-5 0.0016906829709580642 0.0 0.4505003838599908 2.3319765116662955E-4 84-85 7.07921441041554E-5 0.0016948472147288967 0.0 0.4509209724808449 2.3319765116662955E-4 86-87 7.495638787498807E-5 0.0017156684335830604 0.0 0.451066721012824 2.3319765116662955E-4 88-89 7.495638787498807E-5 0.0017614751150622195 0.0 0.45109587071921986 2.415261387082949E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16775 0.0 50.976418 1 GTATCAA 30095 0.0 37.1506 1 TCAACGC 38205 0.0 29.20753 4 ATCAACG 38920 0.0 28.66036 3 CAACGCA 39150 0.0 28.50252 5 TATCAAC 39855 0.0 28.052874 2 AACGCAG 40425 0.0 27.685322 6 TGGTATC 7795 0.0 25.932652 2 GTGGTAT 8230 0.0 25.714132 1 ACGCAGA 46205 0.0 24.194065 7 CGCAGAG 47700 0.0 23.462679 8 GCAGAGT 53625 0.0 20.854233 9 GAGTACT 31375 0.0 19.43493 12-13 GTACATG 38395 0.0 19.364426 1 AGAGTAC 49065 0.0 19.30241 10-11 TACATGG 39560 0.0 18.837746 2 CAGAGTA 52775 0.0 18.569918 10-11 ACATGGG 39180 0.0 18.316395 3 GTACTTT 34240 0.0 17.764843 14-15 AGTACTT 34465 0.0 17.661222 12-13 >>END_MODULE