##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139500_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10776029 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.573100721982097 31.0 18.0 32.0 18.0 33.0 2 30.74897237191919 33.0 30.0 33.0 27.0 33.0 3 31.20930947754502 33.0 31.0 33.0 27.0 34.0 4 31.755717899422876 33.0 32.0 33.0 29.0 34.0 5 32.123767855487394 33.0 33.0 34.0 31.0 34.0 6 35.44653962976529 38.0 36.0 38.0 29.0 38.0 7 35.73524412378623 38.0 36.0 38.0 31.0 38.0 8 36.01501786975518 38.0 37.0 38.0 31.0 38.0 9 36.52154388225941 38.0 37.0 38.0 34.0 38.0 10-11 36.62157006073387 38.0 38.0 38.0 34.0 38.0 12-13 36.692869887414 38.0 38.0 38.0 34.0 38.0 14-15 36.683900535160035 38.0 38.0 38.0 34.0 38.0 16-17 36.6979585893839 38.0 38.0 38.0 34.0 38.0 18-19 36.73406688122313 38.0 38.0 38.0 34.0 38.0 20-21 36.75983169331943 38.0 38.0 38.0 34.5 38.0 22-23 36.78586213451334 38.0 38.0 38.0 35.0 38.0 24-25 36.78020856247702 38.0 38.0 38.0 35.0 38.0 26-27 36.74571592517597 38.0 38.0 38.0 34.5 38.0 28-29 36.741356763509565 38.0 38.0 38.0 34.5 38.0 30-31 36.7199941408206 38.0 38.0 38.0 34.0 38.0 32-33 36.69677932150388 38.0 38.0 38.0 34.0 38.0 34-35 36.662377059843614 38.0 38.0 38.0 34.0 38.0 36-37 36.63507227582704 38.0 38.0 38.0 34.0 38.0 38-39 36.598040298668224 38.0 38.0 38.0 34.0 38.0 40-41 36.62368169202442 38.0 38.0 38.0 34.0 38.0 42-43 36.59706519640468 38.0 38.0 38.0 34.0 38.0 44-45 36.548062421137814 38.0 38.0 38.0 34.0 38.0 46-47 36.501167367433226 38.0 38.0 38.0 34.0 38.0 48-49 36.45594156987455 38.0 38.0 38.0 34.0 38.0 50-51 36.43251689546845 38.0 38.0 38.0 34.0 38.0 52-53 36.3972217393501 38.0 38.0 38.0 34.0 38.0 54-55 36.325758970491776 38.0 38.0 38.0 33.0 38.0 56-57 36.33373189008276 38.0 38.0 38.0 33.0 38.0 58-59 36.321706690769176 38.0 38.0 38.0 33.0 38.0 60-61 36.276879519293836 38.0 38.0 38.0 33.0 38.0 62-63 36.280263699175485 38.0 38.0 38.0 33.0 38.0 64-65 36.30014594912869 38.0 38.0 38.0 33.0 38.0 66-67 36.275051208275954 38.0 38.0 38.0 33.0 38.0 68-69 36.25737162755691 38.0 37.0 38.0 33.0 38.0 70-71 36.25485257991839 38.0 37.0 38.0 33.0 38.0 72-73 36.23882700117197 38.0 37.0 38.0 33.0 38.0 74-75 36.226845854581896 38.0 37.0 38.0 33.0 38.0 76-77 36.191551122193395 38.0 37.0 38.0 33.0 38.0 78-79 36.18875976162877 38.0 37.0 38.0 33.0 38.0 80-81 36.181638132864975 38.0 37.0 38.0 33.0 38.0 82-83 36.157129431403476 38.0 37.0 38.0 33.0 38.0 84-85 36.11496959089192 38.0 37.0 38.0 33.0 38.0 86-87 36.1284631742581 38.0 37.0 38.0 33.0 38.0 88-89 36.129678347764255 38.0 37.0 38.0 33.0 38.0 90-91 36.12116637739126 38.0 37.0 38.0 33.0 38.0 92-93 36.11259883619438 38.0 37.0 38.0 33.0 38.0 94-95 36.09605970948406 38.0 37.0 38.0 33.0 38.0 96-97 36.091926589412225 38.0 37.0 38.0 33.0 38.0 98-99 36.140666338386346 38.0 37.0 38.0 33.0 38.0 100-101 35.61572771684064 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 5.0 18 19.0 19 46.0 20 149.0 21 626.0 22 2669.0 23 7767.0 24 17588.0 25 32822.0 26 53794.0 27 80023.0 28 113678.0 29 150556.0 30 193821.0 31 243703.0 32 309315.0 33 401120.0 34 551795.0 35 854389.0 36 1815051.0 37 5947093.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 39.89012093415859 20.071280431780576 16.05389146595652 23.984707168104315 2 14.432923296698627 21.450239230054038 41.39478466511179 22.72205280813554 3 18.162220110669963 25.75503846963007 31.169360380628795 24.913381039071172 4 12.743943061029253 18.566728059102292 37.44943522330907 31.239893656559385 5 13.76639099786227 36.99990947726603 35.25814994742718 13.975549577444522 6 30.1115373761522 37.79280846404552 18.19002157473778 13.905632585064499 7 26.53260103248814 32.55895640169466 22.346837802069228 18.561604763747972 8 24.253683801333498 37.16036770131186 20.58640525187896 17.999543245475675 9 25.066524969448395 17.21577586697289 20.99163801433719 36.726061149241524 10-11 24.342037312631582 26.840383410252517 28.31997760956286 20.49760166755305 12-13 25.194610185254696 24.128948613631238 28.599547198694435 22.076894002419632 14-15 22.230224553075082 25.595555764661686 26.228015204490486 25.946204477772746 16-17 21.807031142919158 28.83623921205112 26.952284556769474 22.40444508826025 18-19 21.863958421047307 27.661033577396644 28.93695349186607 21.53805450968998 20-21 22.53039059899406 26.70441674632832 29.002235846805753 21.762956807871873 22-23 22.30741641953188 26.897875223184652 28.809097325886274 21.985611031397198 24-25 22.15287532046573 27.11305036777738 28.895935527878674 21.838138783878218 26-27 22.069777393385593 27.302633976125755 28.85817836072824 21.769410269760414 28-29 21.960455539994875 27.195083897666024 28.893890905173535 21.95056965716557 30-31 22.42544563067348 26.97439833108051 28.863780172917448 21.736375865328565 32-33 22.06624774841881 27.16924034250439 28.847971403294785 21.91654050578201 34-35 22.154013701190554 26.920985275074628 29.008638547554455 21.916362476180364 36-37 21.95028499104951 27.1868481635694 28.92460521086178 21.938261634519304 38-39 21.891514507524214 26.947858100634186 29.123531851295414 22.037095540546183 40-41 22.126150056377195 26.811991703082573 29.056884300945065 22.00497393959517 42-43 22.198427632333374 26.851265196828468 28.892445563950314 22.057861606887847 44-45 22.064049307815726 27.115201973789738 28.725012684307117 22.095736034087416 46-47 22.348546580322523 26.869231225910696 28.285550509889106 22.49667168387768 48-49 22.218890787953182 26.96502033153299 28.315865561902402 22.500223318611425 50-51 22.06387486142278 27.120536534124717 28.400625976856332 22.41496262759618 52-53 22.212173938944144 27.117924329261783 28.454088965118384 22.215812766675686 54-55 22.198548480605847 27.08951362737033 28.21942870072334 22.492509191300478 56-57 22.39784212838899 27.32238652395128 27.935148304606017 22.344623043053712 58-59 22.05253711332294 27.554427618438044 28.32553856304984 22.06749670518918 60-61 22.354140865225954 27.811013050804927 27.85093795682888 21.983908127140232 62-63 22.080913959873914 28.154453986175547 27.77522017382151 21.98941188012903 64-65 22.008280571552184 28.026872602301705 27.813222308152202 22.151624517993906 66-67 22.0810874661606 28.038672309633494 27.68119131878467 22.199048905421233 68-69 22.04588113490313 27.82833862356595 27.823665082837977 22.302115158692935 70-71 22.162841058080904 27.426729606758073 27.927258023304567 22.483171311856452 72-73 22.253247802710394 27.29841425860984 27.929767785106396 22.51857015357337 74-75 22.17851407113749 27.41834995873364 27.917562802164813 22.485573167964056 76-77 22.360568760810132 27.324171948465235 27.80316603001675 22.51209326070788 78-79 22.287829410178244 27.34514941833878 27.74121398903782 22.62580718244515 80-81 22.317665365492985 27.396105475190787 27.746311896532095 22.539917262784137 82-83 22.375170114927386 27.37021119806568 27.815695937300028 22.438922749706904 84-85 22.44324534711731 27.41027087143028 27.72943086059551 22.4170529208569 86-87 22.348072797185335 27.472385833952938 27.740665774079375 22.438875594782353 88-89 22.38865166235232 27.45948662532811 27.715193981814508 22.436667730505064 90-91 22.409788497728464 27.49398806870829 27.72029872296553 22.375924710597708 92-93 22.517689397702977 27.44312644861881 27.71874050567149 22.320443648006723 94-95 22.373194116141647 27.482879685587598 27.74343396087148 22.400492237399273 96-97 22.4043244255745 27.475255368495393 27.743935272139613 22.37648493379049 98-99 22.54355103156169 28.06860505128711 27.845074716744346 21.542769200406855 100-101 23.23208412767507 30.56598984843268 25.14926656917531 21.05265945471694 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3395.0 1 3103.0 2 3345.0 3 4109.0 4 5063.5 5 7054.0 6 9124.5 7 12698.0 8 16535.0 9 17964.5 10 17040.5 11 15569.0 12 16442.0 13 20324.0 14 29155.5 15 40321.0 16 48201.0 17 51770.5 18 51357.5 19 47705.5 20 42612.0 21 38007.5 22 36322.0 23 39144.0 24 46705.5 25 59243.0 26 75621.0 27 93962.0 28 115271.0 29 139219.5 30 162596.5 31 186688.0 32 212508.5 33 238520.5 34 263042.5 35 285382.0 36 310042.0 37 334093.5 38 353586.5 39 369371.5 40 384515.5 41 400036.5 42 410195.5 43 424429.5 44 459069.0 45 479222.0 46 471480.0 47 462801.5 48 454451.5 49 448299.0 50 442288.5 51 433148.0 52 416651.5 53 393653.5 54 369384.0 55 343290.0 56 316861.0 57 287997.5 58 256900.0 59 221709.0 60 183250.0 61 148451.5 62 116849.5 63 89604.5 64 67347.5 65 49895.5 66 37003.0 67 27878.0 68 21223.5 69 15880.5 70 11792.5 71 8497.0 72 5974.5 73 4066.0 74 2591.0 75 1653.0 76 1082.0 77 673.5 78 425.5 79 279.0 80 166.0 81 86.0 82 51.5 83 39.5 84 30.0 85 20.5 86 15.5 87 12.5 88 11.0 89 10.0 90 7.0 91 4.0 92 2.5 93 1.5 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.003582024510141909 4 0.0 5 0.04875636470540307 6 0.0 7 0.002895315148093978 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 1.8559712487781908E-5 16-17 0.0 18-19 0.0 20-21 5.5680377557504137E-5 22-23 9.280749780637878E-6 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 4.808304210636805E-6 46-47 8.003027763667388E-4 48-49 1.8100270902351827E-4 50-51 7.148504813803141E-4 52-53 0.0013651622991815231 54-55 0.0030381063483130967 56-57 0.0028332384055882935 58-59 0.006457908931115705 60-61 0.005701773052163713 62-63 0.006622608297283634 64-65 0.0038786414121245497 66-67 0.006453671732912567 68-69 0.006623060085831679 70-71 0.0031837443373971454 72-73 0.0025842945970147445 74-75 0.003530044035386779 76-77 0.0022054678952519637 78-79 0.0 80-81 5.341483875465834E-4 82-83 2.1012315431654578E-4 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 5.682731769317939E-4 94-95 8.470154563380473E-5 96-97 0.0 98-99 1.2650987959928247E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 135.0 20-21 615.0 22-23 1246.0 24-25 1482.0 26-27 3191.0 28-29 7156.0 30-31 19679.0 32-33 26093.0 34-35 36508.0 36-37 56074.0 38-39 63930.0 40-41 64915.0 42-43 74565.0 44-45 88956.0 46-47 89577.0 48-49 81462.0 50-51 72552.0 52-53 64535.0 54-55 69711.0 56-57 70580.0 58-59 76980.0 60-61 77722.0 62-63 77499.0 64-65 91469.0 66-67 99312.0 68-69 97046.0 70-71 114330.0 72-73 79057.0 74-75 80313.0 76-77 84752.0 78-79 89327.0 80-81 89429.0 82-83 85043.0 84-85 83935.0 86-87 87751.0 88-89 92534.0 90-91 94618.0 92-93 93624.0 94-95 100464.0 96-97 161112.0 98-99 905572.0 100-101 7121178.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.49522588467005 #Duplication Level Percentage of deduplicated Percentage of total 1 88.37429490388052 72.90457420494069 2 7.854165111697266 12.958622500499214 3 2.0346758158711316 5.035531230970929 4 0.7660595559294167 2.52785024430029 5 0.3633730957316537 1.4988272806397303 6 0.19950107095986977 0.9874731547840828 7 0.11160671007668242 0.6444914530614558 8 0.07076013760467385 0.4669898828262324 9 0.04728964354715855 0.35110528437855365 >10 0.17365149631757137 2.257233049744912 >50 0.003494485007410833 0.1869886587531693 >100 0.0010865582210237248 0.15180195712033878 >500 2.0707691930644627E-5 0.011206354345298594 >1k 2.0707463681458233E-5 0.017304743635212047 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.855971248778191E-5 2 0.0 9.279856243890955E-6 0.0 0.0 1.855971248778191E-5 3 0.0 9.279856243890955E-6 0.0 0.0 1.855971248778191E-5 4 0.0 8.35187061950186E-5 0.0 0.0 1.855971248778191E-5 5 0.0 8.35187061950186E-5 0.0 0.0 1.855971248778191E-5 6 0.0 8.35187061950186E-5 0.0 0.0 2.7839568731672863E-5 7 0.0 1.020784186828005E-4 0.0 9.279856243890955E-6 2.7839568731672863E-5 8 0.0 1.020784186828005E-4 0.0 9.279856243890955E-6 2.7839568731672863E-5 9 0.0 2.04156837365601E-4 0.0 9.279856243890955E-6 2.7839568731672863E-5 10-11 0.0 2.04156837365601E-4 0.0 1.855971248778191E-5 2.7839568731672863E-5 12-13 0.0 2.04156837365601E-4 0.0 1.855971248778191E-5 2.7839568731672863E-5 14-15 0.0 2.3663633421921933E-4 0.0 2.3199640609727387E-5 4.6399281219454774E-5 16-17 0.0 2.5055611858505576E-4 0.0 3.2479496853618346E-5 5.5679137463345726E-5 18-19 0.0 2.644759029508922E-4 0.0 3.711942497556382E-5 5.5679137463345726E-5 20-21 0.0 2.783956873167286E-4 0.0 4.17593530975093E-5 5.5679137463345726E-5 22-23 0.0 3.10875184170347E-4 0.0 4.6399281219454774E-5 6.495899370723669E-5 24-25 0.0 3.4335468102396534E-4 0.0 5.5679137463345726E-5 7.423884995112764E-5 26-27 0.0 3.526345372678563E-4 0.0 1.3455791553641886E-4 7.423884995112764E-5 28-29 0.0 3.5727446538980176E-4 0.0 4.454330997067658E-4 8.35187061950186E-5 30-31 0.0 4.315133153409294E-4 0.0 0.0017167734051198266 8.35187061950186E-5 32-33 0.0 4.4079317158482033E-4 0.0 0.0044311313564579305 9.279856243890955E-5 34-35 0.0 5.05752165292057E-4 0.0 0.008119874213404585 9.279856243890955E-5 36-37 0.0 5.707111589992937E-4 0.0 0.013567149828568575 9.279856243890955E-5 38-39 0.0 5.939107996090212E-4 0.0 0.024605538830676864 9.279856243890955E-5 40-41 0.0 6.681496495601488E-4 0.0 0.05534042271044371 9.279856243890955E-5 42-43 0.0 6.774295058040397E-4 0.0 0.06582666026604049 9.279856243890955E-5 44-45 0.0 7.331086432673854E-4 0.0 0.08052131262824182 9.743849056085502E-5 46-47 0.0 7.795079244868402E-4 0.0 0.09607435169300305 1.020784186828005E-4 48-49 0.0 7.841478526087857E-4 0.0 0.11037925009296096 1.1135827492669145E-4 50-51 0.0 9.001460556574226E-4 0.0 0.12461918949921164 1.1135827492669145E-4 52-53 0.0 9.187057681452045E-4 0.0 0.1475404344216223 1.206381311705824E-4 54-55 0.0 9.279856243890954E-4 0.0 0.20256998194789566 1.3919784365836434E-4 56-57 0.0 9.279856243890954E-4 0.0 0.2638866320794051 1.484776999022553E-4 58-59 0.0 9.372654806329864E-4 0.0 0.3348218532077076 1.484776999022553E-4 60-61 0.0 9.465453368768773E-4 0.0 0.35321452828309946 1.484776999022553E-4 62-63 0.0 9.465453368768773E-4 0.0 0.36421115793211023 1.7631726863392814E-4 64-65 0.0 0.0010486237555596778 0.0 0.3723403120017587 1.7631726863392814E-4 66-67 9.279856243890955E-6 0.0010486237555596778 0.0 0.37805206351987364 1.7631726863392814E-4 68-69 9.279856243890955E-6 0.0010579036118035688 0.0 0.38329054236955007 1.8095719675587362E-4 70-71 9.279856243890955E-6 0.0010718233961694052 0.0 0.38787943128215413 1.9487698112171005E-4 72-73 9.279856243890955E-6 0.0010811032524132961 0.0 0.39183728997017364 2.3199640609727386E-4 74-75 1.3919784365836433E-5 0.001099662964901078 0.0 0.3951409187929988 2.3199640609727386E-4 76-77 1.855971248778191E-5 0.001127502533632751 0.0 0.3981243925754097 2.3199640609727386E-4 78-79 1.855971248778191E-5 0.0011507021742424783 0.0 0.40065779332999196 2.3663633421921933E-4 80-81 1.855971248778191E-5 0.0011553421023644238 0.0 0.40166465773245413 2.459161904631103E-4 82-83 1.855971248778191E-5 0.0011599820304863692 0.0 0.4020683314790634 2.598359748289467E-4 84-85 1.855971248778191E-5 0.0011692618867302602 0.0 0.40242096601633126 2.598359748289467E-4 86-87 1.855971248778191E-5 0.0011692618867302602 0.0 0.4025601638599896 2.598359748289467E-4 88-89 1.855971248778191E-5 0.0011971014554619333 0.0 0.4025972832849652 2.598359748289467E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15835 0.0 51.58221 1 GTATCAA 28315 0.0 36.54265 1 CTTATAC 14200 0.0 30.204065 1 ATCAACG 35665 0.0 28.8424 3 TCAACGC 35735 0.0 28.833261 4 TATCAAC 36765 0.0 28.21417 2 CAACGCA 36540 0.0 28.139006 5 AACGCAG 37565 0.0 27.463486 6 TATACAC 18635 0.0 25.817421 3 GTGGTAT 7540 0.0 24.779009 1 TGGTATC 7390 0.0 24.172596 2 ACGCAGA 42660 0.0 24.102568 7 CGCAGAG 43620 0.0 23.670658 8 TTATACA 18970 0.0 23.337128 2 GCAGAGT 49455 0.0 20.851688 9 TATGCCG 12740 0.0 20.043118 42-43 ACATCTC 22090 0.0 20.031961 8 GAGTACT 29875 0.0 19.965775 12-13 ACACATC 22020 0.0 19.900055 6 TACACAT 23745 0.0 19.897348 5 >>END_MODULE