##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139498_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14379321 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.199082557514362 31.0 25.0 33.0 18.0 33.0 2 30.969822079916014 33.0 31.0 33.0 27.0 33.0 3 31.358129984023584 33.0 31.0 33.0 28.0 34.0 4 31.84822753452684 33.0 32.0 33.0 29.0 34.0 5 32.19684684694082 33.0 33.0 34.0 31.0 34.0 6 35.54357907442222 38.0 36.0 38.0 29.0 38.0 7 35.818823851279205 38.0 36.0 38.0 31.0 38.0 8 36.083776139360126 38.0 37.0 38.0 33.0 38.0 9 36.561821938601966 38.0 37.0 38.0 34.0 38.0 10-11 36.653453316745626 38.0 38.0 38.0 34.0 38.0 12-13 36.72550379812788 38.0 38.0 38.0 34.0 38.0 14-15 36.715953451487735 38.0 38.0 38.0 34.0 38.0 16-17 36.73180541695953 38.0 38.0 38.0 34.0 38.0 18-19 36.76462198736644 38.0 38.0 38.0 34.5 38.0 20-21 36.78709402884049 38.0 38.0 38.0 35.0 38.0 22-23 36.81210757818042 38.0 38.0 38.0 35.0 38.0 24-25 36.80854314913465 38.0 38.0 38.0 35.0 38.0 26-27 36.77464974453745 38.0 38.0 38.0 35.0 38.0 28-29 36.76927669200535 38.0 38.0 38.0 35.0 38.0 30-31 36.749993968186914 38.0 38.0 38.0 35.0 38.0 32-33 36.733078765700256 38.0 38.0 38.0 34.5 38.0 34-35 36.7068018948532 38.0 38.0 38.0 34.0 38.0 36-37 36.68350861881352 38.0 38.0 38.0 34.0 38.0 38-39 36.674119522991724 38.0 38.0 38.0 34.0 38.0 40-41 36.65822684923767 38.0 38.0 38.0 34.0 38.0 42-43 36.621353712860554 38.0 38.0 38.0 34.0 38.0 44-45 36.5744433939633 38.0 38.0 38.0 34.0 38.0 46-47 36.531292045768666 38.0 38.0 38.0 34.0 38.0 48-49 36.49024254288203 38.0 38.0 38.0 34.0 38.0 50-51 36.468878678366146 38.0 38.0 38.0 34.0 38.0 52-53 36.43252264738135 38.0 38.0 38.0 34.0 38.0 54-55 36.365371466964916 38.0 38.0 38.0 34.0 38.0 56-57 36.37372882295122 38.0 38.0 38.0 34.0 38.0 58-59 36.37119672908348 38.0 38.0 38.0 34.0 38.0 60-61 36.33047016365239 38.0 38.0 38.0 33.5 38.0 62-63 36.33347811956418 38.0 38.0 38.0 33.0 38.0 64-65 36.35872744943207 38.0 38.0 38.0 34.0 38.0 66-67 36.34004155362855 38.0 38.0 38.0 33.5 38.0 68-69 36.324880112073885 38.0 38.0 38.0 33.0 38.0 70-71 36.32454950784797 38.0 38.0 38.0 33.0 38.0 72-73 36.31300266813308 38.0 38.0 38.0 33.0 38.0 74-75 36.29430150749211 38.0 37.0 38.0 33.0 38.0 76-77 36.25360312260375 38.0 37.0 38.0 33.0 38.0 78-79 36.24207730238338 38.0 37.0 38.0 33.0 38.0 80-81 36.226818895019264 38.0 37.0 38.0 33.0 38.0 82-83 36.183172846574806 38.0 37.0 38.0 33.0 38.0 84-85 36.14340349205729 38.0 37.0 38.0 33.0 38.0 86-87 36.166650235409804 38.0 37.0 38.0 33.0 38.0 88-89 36.16297703827648 38.0 37.0 38.0 33.0 38.0 90-91 36.15867335370713 38.0 37.0 38.0 33.0 38.0 92-93 36.15108913088386 38.0 37.0 38.0 33.0 38.0 94-95 36.13022321076423 38.0 37.0 38.0 33.0 38.0 96-97 36.071209223620635 38.0 37.0 38.0 33.0 38.0 98-99 36.09725437179052 38.0 37.0 38.0 33.0 38.0 100-101 35.60420834843288 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 5.0 18 15.0 19 47.0 20 141.0 21 763.0 22 3263.0 23 9982.0 24 22498.0 25 41653.0 26 68464.0 27 103099.0 28 145418.0 29 194221.0 30 250395.0 31 318198.0 32 403682.0 33 522307.0 34 719095.0 35 1109702.0 36 2331177.0 37 8135196.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 40.61321810675205 19.971158582522776 15.714045190311838 23.701578120413338 2 14.534413690326545 21.545377559900082 41.13073211175966 22.789476638013713 3 18.52189591925556 25.686166534921767 30.781787184158233 25.010150361664447 4 12.86636552588262 18.097558292217 37.848810802679765 31.18726537922062 5 13.829292409418844 37.07006744355253 35.13080525713346 13.96983488989517 6 30.33641852768987 37.670339232290594 18.255208295301287 13.738033944718254 7 26.73020423335729 32.50867330208615 22.66073992472996 18.1003825398266 8 24.324382215265935 37.0338557710757 20.574740629268934 18.06702138438943 9 25.19837341415495 17.263708070777472 21.335374598007792 36.202543917059785 10-11 24.46977240683939 26.82288081693429 28.300791403877533 20.406555372348784 12-13 25.177308441754654 24.324702119105623 28.695819503577397 21.802169935562326 14-15 22.2457204769475 25.713343090633956 26.54174465917839 25.49919177324016 16-17 21.673961517376238 28.806763546067298 27.268512887360952 22.250762049195508 18-19 21.694678768211656 27.90779898438876 29.127335011159428 21.270187236240155 20-21 22.508336337152514 26.959241784343007 29.11700860363823 21.41541327486625 22-23 22.29774956899034 26.78404753750695 29.02046742952432 21.89773546397839 24-25 22.07622065195643 26.946780959955536 29.05251594357157 21.924482444516467 26-27 21.942248918702123 27.054681635433038 29.1050325137245 21.898036932140343 28-29 21.873653841803684 27.09631784733013 29.124273740149054 21.905754570717136 30-31 22.08940092403476 26.96912292635763 29.039597140518087 21.901879009089516 32-33 21.91945643933841 27.139671523726154 28.957121337136332 21.983750699799103 34-35 22.14146670685915 27.089897593861327 28.959778800444823 21.8088568988347 36-37 22.06547695852235 27.0054821106588 28.987076835652363 21.94196409516649 38-39 21.93865847730383 27.18109357551776 29.006339192469127 21.873908754709287 40-41 22.111582832036316 26.98281459784472 28.91862329638173 21.986979273737234 42-43 22.09004100981549 27.069038639504427 28.737674295103567 22.103246055576516 44-45 22.02011240871676 27.1256169708316 28.627755448693915 22.226515171757725 46-47 22.161415160099974 27.12365691454118 28.41720739604534 22.297720529313512 48-49 22.0528978134261 27.32512458000859 28.433632188129 22.188345418436313 50-51 21.999667727661237 27.46992995994681 28.320239065499305 22.21016324689265 52-53 22.16081700889177 27.430028841947152 27.944358790540765 22.464795358620318 54-55 22.140821853325782 27.158202833902003 28.128363850489468 22.57261146228275 56-57 22.122070932814562 26.947989843427212 28.38287681612203 22.547062407636194 58-59 21.99687227307928 26.758665067724834 28.54846188248518 22.696000776710708 60-61 22.078037470500874 26.622174954752698 28.78758012804156 22.512207446704867 62-63 21.857747286847562 27.123234677618314 28.75784540985706 22.26117262567706 64-65 21.525328469435458 27.250289208301925 28.573889472139758 22.65049285012286 66-67 21.60350898245433 27.736508090816432 28.114246611548154 22.545736315181085 68-69 21.645129680557844 27.94119511362333 27.8252919840052 22.588383221813626 70-71 21.67422252241817 27.58086068987388 27.81564999845068 22.92926678925727 72-73 21.618352179365722 27.297100819025406 27.772697771114927 23.311849230493944 74-75 21.88734667526169 27.154551619104282 27.757959382511583 23.200142323122446 76-77 22.27888076931445 26.96479718032807 27.67677750058169 23.07954454977579 78-79 22.42474445070151 26.84558270984219 27.121042576976002 23.608630262480297 80-81 22.342869385353296 27.250734099677278 27.033957785269664 23.372438729699766 82-83 22.34872193975049 27.34323009220048 27.13127671109562 23.176771256953412 84-85 22.365124018888974 27.386223973134598 27.026199545552114 23.222452462424314 86-87 22.59551855703786 27.65018113211092 26.98228180034275 22.77201851050847 88-89 22.74515416328205 27.4320956069404 27.184528217875425 22.638222011902126 90-91 22.522888000445356 27.47315320966634 27.38510089695232 22.618857892935992 92-93 22.405854539094133 27.043256375649925 27.303246558822856 23.24764252643308 94-95 22.208228193740403 27.060488736202572 27.84982309130099 22.881459978756034 96-97 21.94648184620645 27.31220666303805 27.999882220245066 22.741429270510434 98-99 22.2589336886554 27.506832592624885 28.279776161631574 21.95445755708814 100-101 23.02469218277368 30.249701516230488 25.594916047008574 21.130690253987254 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4766.0 1 4215.5 2 4334.5 3 5294.5 4 6412.0 5 8843.5 6 11610.5 7 16422.5 8 21296.5 9 22800.0 10 21485.5 11 19555.5 12 20508.5 13 25109.0 14 35604.5 15 48747.5 16 57850.0 17 61753.5 18 61173.0 19 56874.5 20 50904.5 21 45879.0 22 44389.5 23 48756.0 24 58643.0 25 74703.0 26 95744.0 27 119249.0 28 147560.0 29 180215.5 30 212605.0 31 245413.5 32 280062.5 33 315159.0 34 347886.5 35 377717.0 36 412774.0 37 444871.0 38 468165.0 39 488453.0 40 509392.5 41 530118.0 42 542604.5 43 555078.5 44 569156.5 45 581084.5 46 591530.5 47 598246.5 48 599485.5 49 594281.0 50 584103.0 51 567501.0 52 544310.5 53 516339.5 54 487149.5 55 455007.0 56 416337.0 57 374728.5 58 335180.0 59 291537.0 60 242228.5 61 195484.5 62 153557.0 63 117225.5 64 87106.0 65 64488.5 66 48464.5 67 36876.0 68 27767.5 69 20499.5 70 14777.5 71 10232.5 72 6970.0 73 4561.0 74 2905.5 75 1800.0 76 1129.0 77 678.0 78 404.5 79 252.5 80 156.5 81 99.5 82 74.5 83 56.0 84 40.5 85 29.0 86 21.5 87 12.5 88 4.5 89 3.5 90 6.0 91 6.0 92 5.0 93 2.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0036371675686216335 4 0.0 5 0.049752001502713514 6 0.0 7 0.0029625877327587305 8 0.0 9 0.0 10-11 3.4772156487778527E-6 12-13 0.0 14-15 1.7386078243889265E-5 16-17 0.0 18-19 0.0 20-21 5.5636982597795034E-5 22-23 3.4775669286445343E-6 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 3.591424468482647E-6 46-47 7.20516735775325E-4 48-49 1.8612925384723695E-4 50-51 7.021860042932608E-4 52-53 0.0012897811086241455 54-55 0.003150866832311533 56-57 0.0027901487323196065 58-59 0.006398122743393587 60-61 0.005641096725695919 62-63 0.006558054711973528 64-65 0.0038233175284041417 66-67 0.0063906757951692345 68-69 0.006759473795071138 70-71 0.0034655615710715783 72-73 0.0026068288394760393 74-75 0.0035909524812872675 76-77 0.0021043896140644563 78-79 0.0 80-81 5.574182390640802E-4 82-83 2.3247156261022007E-4 84-85 0.0 86-87 0.0 88-89 0.0 90-91 1.2729226316351569E-5 92-93 7.164576412223815E-4 94-95 1.0845830296681613E-4 96-97 4.394766782032224E-6 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 202.0 20-21 949.0 22-23 1416.0 24-25 2017.0 26-27 5561.0 28-29 9166.0 30-31 26606.0 32-33 34789.0 34-35 48125.0 36-37 73318.0 38-39 50280.0 40-41 83853.0 42-43 93893.0 44-45 111084.0 46-47 111614.0 48-49 102539.0 50-51 91943.0 52-53 9721.0 54-55 8387.0 56-57 7924.0 58-59 8013.0 60-61 100676.0 62-63 98015.0 64-65 104062.0 66-67 110729.0 68-69 114228.0 70-71 112059.0 72-73 105450.0 74-75 108160.0 76-77 114616.0 78-79 120834.0 80-81 120696.0 82-83 114616.0 84-85 114535.0 86-87 118897.0 88-89 124228.0 90-91 129795.0 92-93 127392.0 94-95 138998.0 96-97 224005.0 98-99 1361456.0 100-101 9834474.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.96662464220978 #Duplication Level Percentage of deduplicated Percentage of total 1 87.24696837046847 70.6409253922247 2 8.520169006177174 13.796986516226736 3 2.2068313006661713 5.360390447091524 4 0.904350131812227 2.928887106702941 5 0.4069390449464347 1.6474240452218656 6 0.23011732806315438 1.1179093994974603 7 0.13534525442809398 0.7670913888668707 8 0.09322020290670421 0.6038180142254203 9 0.060009881146951535 0.4372917769483962 >10 0.1913852406212548 2.3376072547106164 >50 0.0037370454335174112 0.20481533636608876 >100 8.616966280943717E-4 0.10946389182051833 >500 3.2759776349813174E-5 0.014349721709334151 >1k 3.273692543834004E-5 0.0330397083875834 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 6.9544312975557055E-6 0.0 0.0 0.0 3 0.0 6.9544312975557055E-6 0.0 0.0 0.0 4 0.0 4.172658778533423E-5 0.0 6.9544312975557055E-6 0.0 5 1.3908862595111411E-5 4.172658778533423E-5 0.0 2.0863293892667116E-5 0.0 6 1.3908862595111411E-5 4.172658778533423E-5 0.0 2.0863293892667116E-5 6.9544312975557055E-6 7 1.3908862595111411E-5 4.172658778533423E-5 0.0 2.0863293892667116E-5 6.9544312975557055E-6 8 1.3908862595111411E-5 4.8681019082889935E-5 0.0 2.0863293892667116E-5 6.9544312975557055E-6 9 2.0863293892667116E-5 9.040760686822416E-5 0.0 2.7817725190222822E-5 6.9544312975557055E-6 10-11 2.7817725190222822E-5 9.040760686822416E-5 0.0 2.7817725190222822E-5 6.9544312975557055E-6 12-13 4.172658778533423E-5 9.040760686822416E-5 0.0 3.4772156487778524E-5 6.9544312975557055E-6 14-15 5.215823473166779E-5 1.2170254770722485E-4 0.0 3.824937213655638E-5 6.9544312975557055E-6 16-17 6.606709732677921E-5 1.2865697900478056E-4 0.0 4.172658778533423E-5 6.9544312975557055E-6 18-19 7.99759599218906E-5 1.5647470419500337E-4 0.0 4.8681019082889935E-5 6.9544312975557055E-6 20-21 9.736203816577987E-5 1.7386078243889264E-4 0.0 6.954431297555706E-5 6.9544312975557055E-6 22-23 1.0431646946333558E-4 1.8776964503400403E-4 0.0 1.0779368511211343E-4 6.9544312975557055E-6 24-25 1.18225332058447E-4 1.9472407633155974E-4 0.0 1.5299748854622551E-4 6.9544312975557055E-6 26-27 1.321341946535584E-4 2.0167850762911545E-4 0.0 2.6774560495589463E-4 6.9544312975557055E-6 28-29 1.321341946535584E-4 2.0167850762911545E-4 0.0 8.72781127843241E-4 6.9544312975557055E-6 30-31 1.390886259511141E-4 2.0863293892667116E-4 0.0 0.0026113889522321673 6.9544312975557055E-6 32-33 1.460430572486698E-4 2.0863293892667116E-4 0.0 0.006923136356716705 6.9544312975557055E-6 34-35 1.6342913549255905E-4 2.468823110632275E-4 0.0 0.012643156098956273 6.9544312975557055E-6 36-37 1.982012919803376E-4 2.781772519022282E-4 0.0 0.021207538241896123 6.9544312975557055E-6 38-39 2.0863293892667116E-4 2.990405457948953E-4 0.0 0.046782459338657226 6.9544312975557055E-6 40-41 2.1558737022422687E-4 3.2685827098511815E-4 0.0 0.3190553990692606 6.9544312975557055E-6 42-43 2.1558737022422687E-4 3.30335486633896E-4 0.0 0.34363583649047125 6.9544312975557055E-6 44-45 2.1558737022422687E-4 3.5467599617534094E-4 0.0 0.3855049901174054 6.9544312975557055E-6 46-47 2.1558737022422687E-4 3.7553929006800806E-4 0.0 0.4338278559884712 6.9544312975557055E-6 48-49 2.2949623281933828E-4 3.7553929006800806E-4 0.0 0.47873609609243717 6.9544312975557055E-6 50-51 2.4340509541444968E-4 4.0683423090700875E-4 0.0 0.5230845044769499 6.9544312975557055E-6 52-53 2.4340509541444968E-4 4.103114465557866E-4 0.0 0.6957247842231216 6.9544312975557055E-6 54-55 2.4688231106322756E-4 4.2074309350212017E-4 0.0 1.2947760189789213 6.9544312975557055E-6 56-57 2.503595267120054E-4 4.3117474044845373E-4 0.0 1.951691599346033 6.9544312975557055E-6 58-59 2.503595267120054E-4 4.4508360304356515E-4 0.0 2.625496016119259 6.9544312975557055E-6 60-61 2.5731395800956107E-4 4.5551524998989866E-4 0.0 3.1343274136518686 6.9544312975557055E-6 62-63 2.5731395800956107E-4 4.7290132823378793E-4 0.0 3.143444673082964 6.9544312975557055E-6 64-65 2.5731395800956107E-4 5.389684255605672E-4 0.0 3.149428961214511 6.9544312975557055E-6 66-67 2.607911736583389E-4 5.42445641209345E-4 0.0 3.1548221226857653 6.9544312975557055E-6 68-69 2.712228206046725E-4 5.459228568581228E-4 0.0 3.160086627178015 6.9544312975557055E-6 70-71 2.712228206046725E-4 5.528772881556786E-4 0.0 3.164944297439358 6.9544312975557055E-6 72-73 2.781772519022282E-4 5.563545038044564E-4 0.0 3.1688248701033936 6.9544312975557055E-6 74-75 2.781772519022282E-4 5.702633663995678E-4 0.0 3.1718813426586694 6.9544312975557055E-6 76-77 2.781772519022282E-4 6.050355228873463E-4 0.0 3.174670069608989 6.9544312975557055E-6 78-79 2.851316831997839E-4 6.189443854824578E-4 0.0 3.1772745041299237 6.9544312975557055E-6 80-81 2.920861144973396E-4 6.398076793751249E-4 0.0 3.1784219852940208 6.9544312975557055E-6 82-83 2.9556333014611746E-4 6.467621106726806E-4 0.0 3.178860114465767 6.9544312975557055E-6 84-85 3.0599497709245103E-4 6.467621106726806E-4 0.0 3.179287811990566 6.9544312975557055E-6 86-87 3.0599497709245103E-4 6.467621106726806E-4 0.0 3.17941994618522 6.9544312975557055E-6 88-89 3.0599497709245103E-4 6.676254045653477E-4 0.0 3.1794686272043027 6.9544312975557055E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 25400 0.0 40.261818 1 TATCTCG 14465 0.0 34.07962 94-95 GTATCAA 41765 0.0 32.06526 1 CCGTCTT 7485 0.0 29.958939 92-93 TATGCCG 7605 0.0 28.285513 88-89 TGCCGTC 7905 0.0 27.879982 90-91 TCAACGC 50175 0.0 26.479567 4 GCCGTCT 7910 0.0 26.458715 90-91 ATCAACG 50525 0.0 26.279554 3 TCTCGTA 7375 0.0 26.190208 82-83 CAACGCA 51260 0.0 25.893353 5 TATCAAC 51940 0.0 25.77524 2 AACGCAG 52805 0.0 25.216719 6 ATGCCGT 8160 0.0 25.05199 88-89 CTCGTAT 8730 0.0 24.387657 84-85 CGTATGC 9525 0.0 23.012514 86-87 CTATCTC 23240 0.0 22.753695 94-95 ACGCAGA 59220 0.0 22.403494 7 TCGTATG 9080 0.0 22.35633 84-85 CGCAGAG 59990 0.0 22.203299 8 >>END_MODULE