##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139496_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11578970 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.38386514517267 33.0 31.0 33.0 18.0 33.0 2 31.476272414558462 33.0 31.0 33.0 28.0 34.0 3 31.079289695024688 33.0 31.0 33.0 27.0 34.0 4 31.7412412330285 33.0 31.0 33.0 29.0 34.0 5 31.83168969260651 33.0 32.0 33.0 30.0 34.0 6 34.88462937549713 37.0 34.0 38.0 29.0 38.0 7 35.92951100141032 38.0 36.0 38.0 31.0 38.0 8 36.0493891080122 38.0 37.0 38.0 32.0 38.0 9 36.48530922871378 38.0 37.0 38.0 34.0 38.0 10-11 36.65044032413937 38.0 38.0 38.0 34.0 38.0 12-13 36.717465154499926 38.0 38.0 38.0 34.0 38.0 14-15 36.75680980259902 38.0 38.0 38.0 34.0 38.0 16-17 36.77095790903681 38.0 38.0 38.0 34.5 38.0 18-19 36.79643159106553 38.0 38.0 38.0 35.0 38.0 20-21 36.81428588823632 38.0 38.0 38.0 35.0 38.0 22-23 36.82894994291887 38.0 38.0 38.0 35.0 38.0 24-25 36.829726955916016 38.0 38.0 38.0 35.0 38.0 26-27 36.794191508254876 38.0 38.0 38.0 35.0 38.0 28-29 36.78975139116856 38.0 38.0 38.0 35.0 38.0 30-31 36.77083005640931 38.0 38.0 38.0 35.0 38.0 32-33 36.75324899960417 38.0 38.0 38.0 35.0 38.0 34-35 36.73260311388354 38.0 38.0 38.0 35.0 38.0 36-37 36.71144740336018 38.0 38.0 38.0 34.0 38.0 38-39 36.698857384666056 38.0 38.0 38.0 34.0 38.0 40-41 36.689770767538064 38.0 38.0 38.0 34.0 38.0 42-43 36.648011430238974 38.0 38.0 38.0 34.0 38.0 44-45 36.6056579956505 38.0 38.0 38.0 34.0 38.0 46-47 36.575077677780584 38.0 38.0 38.0 34.0 38.0 48-49 36.540216944009394 38.0 38.0 38.0 34.0 38.0 50-51 36.52682330465769 38.0 38.0 38.0 34.0 38.0 52-53 36.50327054790051 38.0 38.0 38.0 34.0 38.0 54-55 36.43437069023568 38.0 38.0 38.0 34.0 38.0 56-57 36.4419432634683 38.0 38.0 38.0 34.0 38.0 58-59 36.43849086107779 38.0 38.0 38.0 34.0 38.0 60-61 36.39483398247593 38.0 38.0 38.0 34.0 38.0 62-63 36.39759585716027 38.0 38.0 38.0 34.0 38.0 64-65 36.41756084294755 38.0 38.0 38.0 34.0 38.0 66-67 36.39680200783708 38.0 38.0 38.0 34.0 38.0 68-69 36.38275507259871 38.0 38.0 38.0 34.0 38.0 70-71 36.38248399214876 38.0 38.0 38.0 34.0 38.0 72-73 36.36979677714544 38.0 38.0 38.0 34.0 38.0 74-75 36.35703060035938 38.0 38.0 38.0 34.0 38.0 76-77 36.3214705876229 38.0 38.0 38.0 33.0 38.0 78-79 36.3182578131764 38.0 38.0 38.0 33.0 38.0 80-81 36.3083563308394 38.0 37.5 38.0 33.0 38.0 82-83 36.27955456982738 38.0 37.0 38.0 33.0 38.0 84-85 36.23355543631489 38.0 37.0 38.0 33.0 38.0 86-87 36.24837132494818 38.0 37.0 38.0 33.0 38.0 88-89 36.24247770095029 38.0 37.0 38.0 33.0 38.0 90-91 36.23335308803492 38.0 37.0 38.0 33.0 38.0 92-93 36.217253315319724 38.0 37.0 38.0 33.0 38.0 94-95 36.19943301193855 38.0 37.0 38.0 33.0 38.0 96-97 36.191916597231014 38.0 37.0 38.0 33.0 38.0 98-99 36.2324869566076 38.0 37.0 38.0 33.0 38.0 100-101 35.702077065636146 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 5.0 19 17.0 20 87.0 21 516.0 22 2494.0 23 7493.0 24 17034.0 25 32174.0 26 53184.0 27 79073.0 28 111532.0 29 149408.0 30 193292.0 31 245014.0 32 312971.0 33 408808.0 34 563899.0 35 875972.0 36 1817164.0 37 6708830.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.477279067136365 19.994559101543572 14.568307889216397 24.959853942103656 2 14.136542369485369 20.544754844342805 42.649311639981796 22.669391146190033 3 18.18517705712917 25.5092455005812 29.85307919790654 26.452498244383083 4 12.5015782923697 18.113027324537505 38.88927944368108 30.49611493941171 5 13.865021768800947 36.8121506071804 35.19982925414043 14.122998369878218 6 30.003307720807637 37.771908900359875 18.611793622403376 13.612989756429112 7 26.798964261028953 32.76598460624706 22.628647539472198 17.806403593251787 8 24.259748492309765 36.906063319967146 20.763081690340332 18.071106497382754 9 25.363352698901544 17.493956716357328 21.347045548956427 35.7956450357847 10-11 24.19175126076634 26.94808894694817 28.479391020073074 20.380768772212416 12-13 25.053365068454493 24.41760901088823 28.754596857691006 21.77442906296627 14-15 22.230364378728364 25.78710591590668 26.55332698446641 25.42920272089855 16-17 21.647689734060975 28.975547911429082 27.224856787779917 22.15190556673003 18-19 21.660739254009638 28.05224903424052 29.12569943613292 21.16131227561692 20-21 22.554670022800153 27.087031081798024 29.066442052900825 21.291856842501 22-23 22.311192798650083 26.961251633984812 28.91254111830558 21.81501444905953 24-25 21.993390048218327 27.125499844273694 29.010295913687305 21.87081419382067 26-27 21.904295262442155 27.288891693820226 28.96268932205866 21.844123721678958 28-29 21.832375408629318 27.28402862828172 29.037390007035935 21.846205956053026 30-31 22.104912609769766 27.201389473964944 28.863687588813104 21.83001032745219 32-33 21.880823535628487 27.376714039774598 28.832801311040374 21.909661113556542 34-35 22.062816756697664 27.31496205934437 28.831492016625166 21.7907291673328 36-37 22.03358078653928 27.20728060237874 28.805240025212825 21.953898585869158 38-39 21.8935950464504 27.38277643181487 28.869885945586176 21.85374257614855 40-41 22.132940226213364 27.260064321396797 28.742497822049913 21.864497630339923 42-43 22.01556648130059 27.34227558448795 28.572215723155626 22.069942211055835 44-45 22.061003933456806 27.423236743951257 28.46623950937042 22.049519813221515 46-47 22.127996033723296 27.434703429749202 28.20981766470997 22.22748287181754 48-49 22.069401626888872 27.51414194590842 28.227897330712263 22.188559096490433 50-51 22.097695555582803 27.627653112578095 28.092173551812653 22.182477780026453 52-53 22.29929215182498 27.661145995175435 27.802736028861542 22.236825824138048 54-55 22.288266799475533 27.575693401171385 27.812548533975278 22.323491265377804 56-57 22.225082620841043 27.65916054095094 27.842820380404397 22.27293645780362 58-59 22.158401689306885 27.63450489048641 27.915446769800546 22.291646650406165 60-61 22.266007035648443 27.64258718818613 27.8636037968142 22.227801979351227 62-63 22.214190004467742 27.71406112825533 27.903943717913513 22.167805149363417 64-65 22.16683549278565 27.65208964855957 27.867530777200223 22.313544081454555 66-67 22.22311517855982 27.758074076985416 27.67586017359658 22.34295057085819 68-69 22.142709886918713 27.731725890327724 27.789410762055823 22.33615346069774 70-71 22.18712749421784 27.488514068058034 27.839465219189556 22.48489321853457 72-73 22.220547761809975 27.55439438058897 27.711146975028957 22.513910882572095 74-75 22.12502483779017 27.696287427187855 27.6865726412482 22.49211509377377 76-77 22.31226264452913 27.5868156031254 27.638290960882205 22.46263079146327 78-79 22.260539636313208 27.584952498169514 27.56906214736835 22.58544571814893 80-81 22.246271125944105 27.74004048677927 27.49498344314786 22.518704944128764 82-83 22.332438957381 27.6636959787602 27.59040447511775 22.41346058874105 84-85 22.381831329899445 27.67073636422171 27.543437012374206 22.403995293504643 86-87 22.296546128827995 27.702026926552264 27.611346205303644 22.3900807393161 88-89 22.326932695199012 27.769227550631282 27.56939504788284 22.33444470628687 90-91 22.35936973549684 27.77618235963604 27.57279257370572 22.291655331161408 92-93 22.423526727985248 27.742182634895812 27.538059559377924 22.29623107774102 94-95 22.291579708209742 27.778396273598183 27.544918772813105 22.385105245378966 96-97 22.380250846831334 27.747150718234593 27.538349213887177 22.334249221046896 98-99 22.521925730445805 28.324733882383313 27.672683354294175 21.480657032876707 100-101 23.1433728414681 30.846385098707223 25.045352143849787 20.96488991597489 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2814.0 1 2467.5 2 2439.0 3 3128.0 4 4209.5 5 5946.5 6 7301.0 7 7615.5 8 7389.5 9 7290.0 10 7480.5 11 8746.0 12 11138.5 13 17171.5 14 27508.5 15 39307.0 16 49492.0 17 54814.5 18 55945.5 19 51688.0 20 46141.5 21 42711.5 22 41619.5 23 46048.5 24 55402.5 25 69955.5 26 88732.0 27 109448.5 28 132948.0 29 158617.0 30 183484.0 31 209893.5 32 239715.0 33 270835.0 34 299724.5 35 327153.5 36 358480.0 37 384921.0 38 404476.5 39 422177.0 40 437160.0 41 449988.5 42 457731.5 43 465497.5 44 475589.0 45 483352.0 46 484916.0 47 481435.0 48 479555.0 49 476554.0 50 468170.0 51 456294.5 52 438234.5 53 413282.0 54 387292.5 55 360019.0 56 329231.0 57 295992.0 58 264302.0 59 230899.0 60 193726.0 61 157313.0 62 124345.0 63 96446.0 64 72781.5 65 53992.5 66 39992.0 67 30425.5 68 23300.0 69 17280.0 70 12642.5 71 9025.0 72 6135.0 73 4062.0 74 2632.5 75 1613.5 76 1001.5 77 601.5 78 381.5 79 242.5 80 167.0 81 115.0 82 78.0 83 54.5 84 38.5 85 27.5 86 17.5 87 14.0 88 9.0 89 4.0 90 5.0 91 4.5 92 3.5 93 3.0 94 1.5 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0036186292908609316 4 0.0 5 0.053674895089977775 6 0.0 7 0.0032559027270992152 8 0.0 9 0.0 10-11 4.31817337811567E-6 12-13 4.31817337811567E-6 14-15 8.63634675623134E-6 16-17 0.0 18-19 0.0 20-21 4.319272130082309E-5 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 8.1349589693007E-4 48-49 1.595022290892236E-4 50-51 7.714930029028801E-4 52-53 0.0014464310773505446 54-55 0.003173274606597947 56-57 0.0030175067563715336 58-59 0.006837221245329773 60-61 0.0059749996850239784 62-63 0.006723524211684822 64-65 0.003901800833763945 66-67 0.006799367575717508 68-69 0.006904347174247968 70-71 0.0035535322209815277 72-73 0.0026664554927652434 74-75 0.0037226808407444228 76-77 0.0021975692431070682 78-79 0.0 80-81 4.5332481707952834E-4 82-83 1.3155407672402143E-4 84-85 0.0 86-87 0.0 88-89 5.419921126055821E-6 90-91 2.191758844281178E-5 92-93 6.539876564817881E-4 94-95 8.969115635108123E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1371.0 20-21 4392.0 22-23 2618.0 24-25 2803.0 26-27 4503.0 28-29 9052.0 30-31 22838.0 32-33 28960.0 34-35 40435.0 36-37 62052.0 38-39 68985.0 40-41 69312.0 42-43 79835.0 44-45 94515.0 46-47 93674.0 48-49 85948.0 50-51 105643.0 52-53 68990.0 54-55 75593.0 56-57 76523.0 58-59 83634.0 60-61 81334.0 62-63 79359.0 64-65 85353.0 66-67 89863.0 68-69 91837.0 70-71 91111.0 72-73 85328.0 74-75 87089.0 76-77 91037.0 78-79 95103.0 80-81 95205.0 82-83 90594.0 84-85 90162.0 86-87 94536.0 88-89 98552.0 90-91 104570.0 92-93 100258.0 94-95 107534.0 96-97 170595.0 98-99 969253.0 100-101 7698621.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.37666784083744 #Duplication Level Percentage of deduplicated Percentage of total 1 89.3173884284878 75.36303615841574 2 7.456818734349266 12.583630349950436 3 1.797402397990327 4.549764753346635 4 0.6500336361166292 2.193906887999385 5 0.2986797890907842 1.260080267744224 6 0.14959502162412772 0.7573397670133151 7 0.1029884187963037 0.6082873722960144 8 0.06103720736427156 0.41200929373659667 9 0.037315532361578654 0.2833704251439248 >10 0.1246208655867891 1.6426814663005118 >50 0.0030956164446197076 0.16978721947469427 >100 9.717376817872717E-4 0.12934673227694513 >500 1.754171407918765E-5 0.007948198122513656 >1k 3.5072391630033564E-5 0.038811108179127876 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 8.63634675623134E-6 0.0 0.0 0.0 3 0.0 1.727269351246268E-5 0.0 0.0 0.0 4 0.0 6.045442729361938E-5 0.0 8.63634675623134E-6 0.0 5 0.0 6.045442729361938E-5 0.0 1.727269351246268E-5 0.0 6 0.0 6.045442729361938E-5 0.0 2.590904026869402E-5 0.0 7 0.0 6.045442729361938E-5 0.0 3.454538702492536E-5 0.0 8 0.0 7.772712080608207E-5 0.0 3.454538702492536E-5 0.0 9 0.0 1.2090885458723876E-4 0.0 3.454538702492536E-5 0.0 10-11 0.0 1.2090885458723876E-4 0.0 3.8863560403041027E-5 0.0 12-13 1.727269351246268E-5 1.2090885458723876E-4 0.0 4.31817337811567E-5 8.63634675623134E-6 14-15 1.727269351246268E-5 1.554542416121641E-4 0.0 4.31817337811567E-5 4.3181733781156705E-5 16-17 4.31817337811567E-5 1.6409058836839546E-4 0.0 4.31817337811567E-5 5.181808053738804E-5 18-19 4.31817337811567E-5 1.8136328188085815E-4 0.0 5.181808053738804E-5 5.6136253915503714E-5 20-21 4.31817337811567E-5 1.986359753933208E-4 0.0 7.340894742796639E-5 6.045442729361938E-5 22-23 4.31817337811567E-5 2.2022684228389916E-4 0.0 8.636346756231341E-5 6.909077404985072E-5 24-25 6.045442729361938E-5 2.677267494431715E-4 0.0 1.1227250783100743E-4 8.204529418419773E-5 26-27 6.477260067173506E-5 2.849994429556342E-4 0.0 1.8136328188085815E-4 8.63634675623134E-5 28-29 6.909077404985072E-5 2.849994429556342E-4 0.0 6.218169664486564E-4 9.93179876966604E-5 30-31 7.772712080608207E-5 3.3249935011490657E-4 0.0 0.0018956781129927792 1.1227250783100741E-4 32-33 8.63634675623134E-5 3.3681752349302226E-4 0.0 0.00509544458617649 1.295452013434701E-4 34-35 9.93179876966604E-5 4.015901241647573E-4 0.0 0.00934452719024231 1.3818154809970145E-4 36-37 1.1227250783100741E-4 4.663627248364924E-4 0.0 0.015454742520275982 1.3818154809970145E-4 38-39 1.1227250783100741E-4 4.663627248364924E-4 0.0 0.026202676058405885 1.4681789485593278E-4 40-41 1.295452013434701E-4 5.311353255082274E-4 0.0 0.056330571717518915 1.4681789485593278E-4 42-43 1.295452013434701E-4 5.440898456425744E-4 0.0 0.06645237011582206 1.5113606823404847E-4 44-45 1.295452013434701E-4 6.045442729361939E-4 0.0 0.08075847851751927 1.597724149902798E-4 46-47 1.3818154809970145E-4 6.649987002298132E-4 0.0 0.09693435599194056 1.6840876174651113E-4 48-49 1.5113606823404847E-4 6.693168736079289E-4 0.0 0.11151682748983718 1.8999962863708948E-4 50-51 1.5545424161216413E-4 7.945439015732832E-4 0.0 0.12556816366222556 1.9431780201520515E-4 52-53 1.6840876174651113E-4 7.945439015732832E-4 0.0 0.14870925479554745 2.1159049552766783E-4 54-55 1.8568145525897382E-4 8.11816595085746E-4 0.0 0.20408982836988093 2.2454501566201483E-4 56-57 1.8999962863708948E-4 8.3772563535444E-4 0.0 0.2660728890393532 2.288631890401305E-4 58-59 1.8999962863708948E-4 8.593165022450183E-4 0.0 0.33562570764066235 2.3749953579636185E-4 60-61 1.8999962863708948E-4 8.852255425137123E-4 0.0 0.35414635325940047 2.5045405593070885E-4 62-63 1.8999962863708948E-4 9.068164094042907E-4 0.0 0.3655549673243821 2.5477222930882454E-4 64-65 2.029541487714365E-4 0.001023407090613414 0.0 0.3735133608602492 2.590904026869402E-4 66-67 2.2022684228389916E-4 0.001036361610747761 0.0 0.3791615316388245 2.590904026869402E-4 68-69 2.2454501566201483E-4 0.0010795433445289176 0.0 0.38455493018809095 2.6340857606505587E-4 70-71 2.288631890401305E-4 0.0011054523847976116 0.0 0.38950787505278966 2.849994429556342E-4 72-73 2.331813624182462E-4 0.0011097705581757274 0.0 0.3935842307217309 3.540902170054849E-4 74-75 2.331813624182462E-4 0.0011356795984444213 0.0 0.3971769509723231 3.540902170054849E-4 76-77 2.4181770917447752E-4 0.0012090885458723877 0.0 0.40033353571172564 3.540902170054849E-4 78-79 2.4181770917447752E-4 0.0012393157595191975 0.0 0.40317057562114766 3.540902170054849E-4 80-81 2.4181770917447752E-4 0.001243633932897313 0.0 0.4045351184086322 3.7568108389606327E-4 82-83 2.4181770917447752E-4 0.001243633932897313 0.0 0.4049798902665781 3.972719507866416E-4 84-85 2.4181770917447752E-4 0.001243633932897313 0.0 0.4054376166446584 3.972719507866416E-4 86-87 2.4181770917447752E-4 0.0012522702796535442 0.0 0.4056017072330268 3.972719507866416E-4 88-89 2.4181770917447752E-4 0.0013559064407283204 0.0 0.4056578434869423 4.05908297542873E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16195 0.0 49.694 1 GTATCAA 29515 0.0 38.572536 1 TCAACGC 35980 0.0 31.123539 4 ATCAACG 36255 0.0 30.78177 3 CAACGCA 36895 0.0 30.351671 5 TATCAAC 37055 0.0 30.315498 2 AACGCAG 38245 0.0 29.320965 6 GTGGTAT 8190 0.0 28.709146 1 TGGTATC 7780 0.0 28.277658 2 ACGCAGA 43615 0.0 25.72079 7 CGCAGAG 44635 0.0 25.180864 8 GCAGAGT 51290 0.0 21.83779 9 GAGTACT 27325 0.0 20.092049 12-13 GTACATG 39155 0.0 19.516426 1 CAGAGTA 50505 0.0 18.931458 10-11 TACATGG 39580 0.0 18.870056 2 AGAGTAC 46770 0.0 18.656185 10-11 ACATGGG 39625 0.0 18.215977 3 GTACTTT 29895 0.0 18.145723 14-15 AGTACTT 30125 0.0 17.185013 12-13 >>END_MODULE