##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139495_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11815044 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.468526058811122 33.0 31.0 33.0 18.0 33.0 2 31.489551118049157 33.0 31.0 33.0 28.0 34.0 3 31.091978921111085 33.0 31.0 33.0 27.0 34.0 4 31.7212584227363 33.0 31.0 33.0 29.0 34.0 5 31.81511985905427 33.0 32.0 33.0 30.0 34.0 6 34.8690451766409 37.0 34.0 38.0 29.0 38.0 7 35.88727007703061 38.0 36.0 38.0 31.0 38.0 8 36.006065064167345 38.0 37.0 38.0 31.0 38.0 9 36.45077987013845 38.0 37.0 38.0 34.0 38.0 10-11 36.60301722109541 38.0 38.0 38.0 34.0 38.0 12-13 36.668646896279014 38.0 38.0 38.0 34.0 38.0 14-15 36.70685276330752 38.0 38.0 38.0 34.0 38.0 16-17 36.71579538764308 38.0 38.0 38.0 34.0 38.0 18-19 36.74402537138245 38.0 38.0 38.0 34.0 38.0 20-21 36.76647492166889 38.0 38.0 38.0 34.5 38.0 22-23 36.781742460567244 38.0 38.0 38.0 35.0 38.0 24-25 36.77992830985365 38.0 38.0 38.0 35.0 38.0 26-27 36.738846916418495 38.0 38.0 38.0 34.0 38.0 28-29 36.72616100164562 38.0 38.0 38.0 34.0 38.0 30-31 36.698095694521314 38.0 38.0 38.0 34.0 38.0 32-33 36.67473365460256 38.0 38.0 38.0 34.0 38.0 34-35 36.64007336090574 38.0 38.0 38.0 34.0 38.0 36-37 36.610439912664646 38.0 38.0 38.0 34.0 38.0 38-39 36.557469939474586 38.0 38.0 38.0 34.0 38.0 40-41 36.595946209846204 38.0 38.0 38.0 34.0 38.0 42-43 36.56261619591417 38.0 38.0 38.0 34.0 38.0 44-45 36.51332405111539 38.0 38.0 38.0 34.0 38.0 46-47 36.46692596923316 38.0 38.0 38.0 34.0 38.0 48-49 36.42111620708369 38.0 38.0 38.0 34.0 38.0 50-51 36.39935722190539 38.0 38.0 38.0 34.0 38.0 52-53 36.36812267980015 38.0 38.0 38.0 34.0 38.0 54-55 36.295514478983975 38.0 38.0 38.0 33.0 38.0 56-57 36.30562925155358 38.0 38.0 38.0 33.0 38.0 58-59 36.29441916376767 38.0 38.0 38.0 33.0 38.0 60-61 36.25172225691195 38.0 37.5 38.0 33.0 38.0 62-63 36.25672601890476 38.0 37.5 38.0 33.0 38.0 64-65 36.277028739202194 38.0 38.0 38.0 33.0 38.0 66-67 36.25561507420606 38.0 37.5 38.0 33.0 38.0 68-69 36.23986435697039 38.0 37.0 38.0 33.0 38.0 70-71 36.240628253180944 38.0 37.0 38.0 33.0 38.0 72-73 36.2260130034227 38.0 37.0 38.0 33.0 38.0 74-75 36.21541642988393 38.0 37.0 38.0 33.0 38.0 76-77 36.18248240806746 38.0 37.0 38.0 33.0 38.0 78-79 36.18085251999848 38.0 37.0 38.0 33.0 38.0 80-81 36.17359397229028 38.0 37.0 38.0 33.0 38.0 82-83 36.144099328381785 38.0 37.0 38.0 33.0 38.0 84-85 36.107486319774495 38.0 37.0 38.0 33.0 38.0 86-87 36.124694851364154 38.0 37.0 38.0 33.0 38.0 88-89 36.127893169398156 38.0 37.0 38.0 33.0 38.0 90-91 36.11513852905398 38.0 37.0 38.0 33.0 38.0 92-93 36.10878097368251 38.0 37.0 38.0 33.0 38.0 94-95 36.09183741452596 38.0 37.0 38.0 33.0 38.0 96-97 36.08520298061852 38.0 37.0 38.0 33.0 38.0 98-99 36.13598639391367 38.0 37.0 38.0 33.0 38.0 100-101 35.609452011079526 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 4.0 18 9.0 19 20.0 20 92.0 21 683.0 22 2877.0 23 8650.0 24 19373.0 25 36441.0 26 60322.0 27 90591.0 28 127013.0 29 167773.0 30 215339.0 31 272388.0 32 343284.0 33 442529.0 34 604958.0 35 922936.0 36 1881670.0 37 6618092.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.09330815864926 20.17193503468967 14.542358030998445 25.19239877566262 2 13.91707893766625 20.249048585853764 43.274472782327344 22.559399694152642 3 18.061751155116127 25.5701731406691 30.06512358889792 26.302952115316852 4 12.20804594549119 18.428522145156634 38.696411117893426 30.667020791458754 5 13.6593053819439 36.819673660992265 35.370631115215026 14.150389841848805 6 29.70334261979896 38.00245686770189 18.42476422432282 13.86943628817633 7 26.371222858390702 32.83704009977439 22.369548666465505 18.4221883753694 8 24.016804338604242 37.17234569756998 20.688192104913025 18.122657858912756 9 24.90814253421316 17.518741360590788 21.19827061160331 36.374845493592744 10-11 24.057875876631346 26.97034505205165 28.415312224622784 20.556466846694217 12-13 25.008222567770378 24.25088725865092 28.69032057773124 22.050569595847463 14-15 22.097271338634624 25.664410432717442 26.4272007485373 25.811117480110628 16-17 21.619970268413727 29.077551467434233 27.050250511128016 22.252227753024027 18-19 21.58170972532984 27.792943471052666 29.159362419640587 21.465984383976902 20-21 22.291685137532212 26.84638792393678 29.177341680789166 21.68458525774184 22-23 22.065987716323846 27.036352677844196 29.054945663276737 21.84271394255522 24-25 22.015196807006205 27.128832545347926 29.20111748348989 21.654853164155973 26-27 21.949710235050972 27.22787616154801 29.120453426380084 21.701960177020936 28-29 21.627415912870653 27.055949952377347 29.21728170972328 22.099352425028723 30-31 22.217613851473782 27.02847313236249 29.15636477490834 21.59754824125539 32-33 22.14313032579697 26.966167392611272 29.290710606011377 21.59999167558038 34-35 21.71507514144106 27.085062369635704 29.540948206488704 21.658914282434534 36-37 21.935396303836324 27.120455560722316 29.190994582419265 21.753153553022088 38-39 21.655250841362825 27.06339065823869 29.400592687924988 21.8807658124735 40-41 21.88321152173375 26.918209100022946 29.364255859721165 21.834323518522144 42-43 21.967295593108457 26.924029405222814 29.23688050339626 21.87179449827246 44-45 21.787645086669148 27.303509869976132 29.031877101984787 21.876967941369934 46-47 22.082885856674643 27.026306105400245 28.568372150967104 22.322435886958008 48-49 22.020856801912498 27.0774909655714 28.561297590269675 22.340354642246428 50-51 21.804770373607127 27.300844042481554 28.665673059497138 22.22871252441418 52-53 21.946836022763236 27.377566823671323 28.716154851736604 21.95944230182884 54-55 21.944525815860278 27.357274094599088 28.418917598563237 22.279282490977394 56-57 22.14003700142719 27.570086143833255 28.17712135779787 22.112755496941688 58-59 21.773153330324803 27.880570757972606 28.60037355915006 21.74590235255253 60-61 21.9878035303455 28.04664398006086 28.109997213365162 21.85555527622848 62-63 21.85288838971203 28.37633599881641 28.09160761369685 21.679167997774705 64-65 21.6391048242677 28.281898481967765 28.078296330592874 22.000700363171664 66-67 21.7298616655709 28.25379326486246 27.94617444869764 22.070170620868996 68-69 21.735457946525813 28.21635013932054 28.100702023465285 21.947489890688367 70-71 21.83597105590928 27.704695811062063 28.238157536198077 22.221175596830577 72-73 21.972163608600955 27.542140715675995 28.09879592066861 22.386899755054436 74-75 21.8870735941663 27.648880358082767 28.084412235302686 22.379633812448247 76-77 22.014796150655798 27.42687431005557 28.12582341164657 22.432506127642057 78-79 21.97250645647225 27.442794953557755 28.070763247983262 22.513935341986738 80-81 22.16711702143827 27.487839709585344 27.90413006406418 22.440913204912206 82-83 22.245481212481344 27.655459401405135 27.9896119650212 22.10944742109232 84-85 22.164182273530443 27.517369346676418 27.85093434034805 22.467514039445092 86-87 22.04546077037702 27.70700257400069 27.913182935531644 22.33435372009065 88-89 22.323273549934182 27.524041824132862 27.85140716368288 22.30127746225008 90-91 22.327747364935473 27.737518514045927 27.835556014509976 22.099178106508624 92-93 22.169266836321597 27.66662358706035 27.910376518455028 22.25373305816302 94-95 22.206160342694446 27.58499101921427 27.920417562120235 22.288431075971047 96-97 22.212438222021415 27.788527425322627 27.937766842848568 22.06126750980739 98-99 22.519168391109286 28.20207047127164 28.052309042920093 21.226452094698978 100-101 22.9148014202373 30.79949644234146 25.50950586654347 20.776196270877765 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3089.0 1 2897.0 2 3554.5 3 4711.0 4 5990.0 5 8598.0 6 11126.5 7 14394.0 8 18167.0 9 19760.0 10 18719.0 11 17399.5 12 18498.5 13 22955.0 14 32694.0 15 44788.0 16 54116.0 17 59404.5 18 59534.0 19 55052.5 20 49402.5 21 44346.5 22 42550.0 23 46378.5 24 55377.0 25 69853.5 26 88373.0 27 109185.5 28 132603.5 29 159119.0 30 185239.0 31 211970.5 32 241758.5 33 271588.0 34 299514.0 35 324750.5 36 352564.5 37 378670.5 38 397112.5 39 411393.0 40 425096.0 41 439497.5 42 448192.0 43 456481.5 44 467599.5 45 477418.5 46 504912.5 47 537476.5 48 536787.5 49 514179.5 50 493739.0 51 470486.5 52 442124.0 53 414950.0 54 387929.5 55 359611.5 56 329913.5 57 297314.0 58 264723.5 59 230088.5 60 190598.5 61 152865.5 62 119723.0 63 91565.0 64 68835.0 65 51121.5 66 37486.5 67 28202.5 68 21682.5 69 16180.5 70 11853.5 71 8456.0 72 5681.5 73 3616.5 74 2303.0 75 1479.0 76 935.5 77 565.0 78 354.5 79 239.0 80 160.5 81 100.5 82 69.0 83 45.5 84 26.5 85 15.5 86 11.0 87 9.5 88 7.5 89 5.5 90 3.5 91 2.0 92 1.5 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.003647891620208947 4 0.0 5 0.05316103774137448 6 0.0 7 0.0032924126224159636 8 0.0 9 0.0 10-11 4.231892830868849E-6 12-13 0.0 14-15 1.2695678492606543E-5 16-17 0.0 18-19 0.0 20-21 5.924780092264908E-5 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 8.761007000657864E-6 46-47 7.730923229060851E-4 48-49 1.6035444747068922E-4 50-51 6.417952602208252E-4 52-53 0.0012832033382083011 54-55 0.003064310929901523 56-57 0.002700159876923967 58-59 0.006308850829226781 60-61 0.005601660202458814 62-63 0.006160249079404444 64-65 0.0036225991283085563 66-67 0.006344799484627515 68-69 0.006675345095185815 70-71 0.0031899476931118833 72-73 0.0024730460066047996 74-75 0.003364098841775399 76-77 0.001990742399230765 78-79 0.0 80-81 5.13352501881869E-4 82-83 2.0012475469323337E-4 84-85 0.0 86-87 0.0 88-89 0.0 90-91 2.1335686517318283E-5 92-93 6.739567580717374E-4 94-95 9.809696252565235E-5 96-97 5.517984518632275E-6 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 147.0 20-21 616.0 22-23 1363.0 24-25 1574.0 26-27 3440.0 28-29 7936.0 30-31 21169.0 32-33 27236.0 34-35 38056.0 36-37 59064.0 38-39 68168.0 40-41 69282.0 42-43 79739.0 44-45 94738.0 46-47 94978.0 48-49 87091.0 50-51 77644.0 52-53 67691.0 54-55 71251.0 56-57 73755.0 58-59 46444.0 60-61 87783.0 62-63 85553.0 64-65 98162.0 66-67 108057.0 68-69 106978.0 70-71 126179.0 72-73 83704.0 74-75 83932.0 76-77 88851.0 78-79 93281.0 80-81 94556.0 82-83 89661.0 84-85 88491.0 86-87 92428.0 88-89 96871.0 90-91 101304.0 92-93 97912.0 94-95 106157.0 96-97 172880.0 98-99 1020579.0 100-101 7900343.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.87251553958413 #Duplication Level Percentage of deduplicated Percentage of total 1 87.74911209870109 70.96491431786913 2 8.121626101535929 13.13632666206313 3 2.1574099176498858 5.234255012711798 4 0.8149717161464567 2.6363525111350343 5 0.41733210209474053 1.6875348455912105 6 0.22617075969935904 1.0974598967031575 7 0.13798420548289464 0.7811390861492795 8 0.08720684530819857 0.5642109561876318 9 0.05649942560649173 0.41123256078047216 >10 0.22366912391094934 2.8876884926562227 >50 0.006244513764413121 0.34176180129387607 >100 0.0017081862806528393 0.20322222281173005 >500 2.166859107171359E-5 0.009795879487059405 >1k 4.333522785832343E-5 0.044105754560301136 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 8.463785661737696E-6 4 0.0 4.231892830868848E-5 0.0 0.0 8.463785661737696E-6 5 0.0 4.231892830868848E-5 0.0 0.0 8.463785661737696E-6 6 1.0156542794085236E-4 4.231892830868848E-5 0.0 0.0 4.231892830868848E-5 7 1.0156542794085236E-4 4.231892830868848E-5 0.0 0.0 4.231892830868848E-5 8 1.0156542794085236E-4 8.463785661737696E-5 0.0 0.0 5.078271397042618E-5 9 1.0156542794085236E-4 1.5234814191127853E-4 0.0 1.6927571323475392E-5 5.924649963216388E-5 10-11 1.057973207717212E-4 1.5234814191127853E-4 0.0 1.6927571323475392E-5 5.924649963216388E-5 12-13 1.1002921360259006E-4 1.5234814191127853E-4 0.0 1.6927571323475392E-5 5.924649963216388E-5 14-15 1.1849299926432775E-4 1.94667070219967E-4 0.0 1.6927571323475392E-5 8.463785661737696E-5 16-17 1.8620328455822932E-4 2.0313085588170472E-4 0.0 1.6927571323475392E-5 1.0156542794085236E-4 18-19 1.8620328455822932E-4 2.200584272051801E-4 0.0 2.115946415434424E-5 1.057973207717212E-4 20-21 1.8620328455822932E-4 2.454497841903932E-4 0.0 2.9623249816081935E-5 1.1426110643345891E-4 22-23 1.9043517738909818E-4 2.750730340064752E-4 0.0 5.501460680129503E-5 1.3542057058780316E-4 24-25 1.94667070219967E-4 3.004643909916882E-4 0.0 9.733353510998352E-5 1.4388435624954085E-4 26-27 1.94667070219967E-4 3.1316006948429477E-4 0.0 1.481162490804097E-4 1.6081192757301624E-4 28-29 1.94667070219967E-4 3.1739196231516363E-4 0.0 4.8666767554991753E-4 1.6081192757301624E-4 30-31 1.94667070219967E-4 4.104936045942783E-4 0.0 0.001641974418377113 1.650438204038851E-4 32-33 1.94667070219967E-4 4.231892830868848E-4 0.0 0.004130327402927996 2.0313085588170472E-4 34-35 1.94667070219967E-4 4.951314612116552E-4 0.0 0.007266159990601813 2.285222128669178E-4 36-37 1.94667070219967E-4 5.58609853674688E-4 0.0 0.012230170281210971 2.285222128669178E-4 38-39 1.94667070219967E-4 5.755374249981634E-4 0.0 0.02259407582400878 2.3698599852865548E-4 40-41 1.94667070219967E-4 6.263201389685895E-4 0.0 0.05555628908364624 2.454497841903932E-4 42-43 1.94667070219967E-4 6.517114959538027E-4 0.0 0.06503572902479246 2.4968167702126205E-4 44-45 1.9889896305083586E-4 7.702044952181304E-4 0.0 0.07897558400967444 2.5814546268299976E-4 46-47 2.0313085588170472E-4 8.63306137497245E-4 0.0 0.093994571666428 2.920006053299505E-4 48-49 2.0313085588170472E-4 8.675380303281139E-4 0.0 0.10795981800829518 2.9623249816081935E-4 50-51 2.0736274871257355E-4 9.1832074429854E-4 0.0 0.12169654213729547 2.9623249816081935E-4 52-53 2.115946415434424E-4 9.352483156220155E-4 0.0 0.14648273844769433 3.089281766534259E-4 54-55 2.115946415434424E-4 9.394802084528843E-4 0.0 0.204832076799714 3.216238551460325E-4 56-57 2.115946415434424E-4 9.47943994114622E-4 0.0 0.269914356645646 3.2585574797690134E-4 58-59 2.115946415434424E-4 9.606396726072285E-4 0.0 0.33426028713900685 3.3855142646950785E-4 60-61 2.2852221286691782E-4 9.817991367615728E-4 0.0 0.6541786894741992 3.427833193003767E-4 62-63 2.623773555138686E-4 0.001007190493746786 0.0 0.6603953400427456 3.554789977929833E-4 64-65 2.623773555138686E-4 0.0011087559216876382 0.0 0.6664850338263658 3.554789977929833E-4 66-67 2.750730340064751E-4 0.0011214516001802448 0.0 0.6721684658982227 3.554789977929833E-4 68-69 2.79304926837344E-4 0.0011299153858419825 0.0 0.6772298097239418 3.597108906238521E-4 70-71 2.920006053299505E-4 0.0011341472786728514 0.0 0.6821472691934114 3.7240656911645864E-4 72-73 3.216238551460325E-4 0.0011383791715037202 0.0 0.6863495387744641 3.89334140439934E-4 74-75 3.216238551460325E-4 0.0011680024213198022 0.0 0.6897308211463283 3.89334140439934E-4 76-77 3.216238551460325E-4 0.0012187851352902282 0.0 0.6926169720569809 3.89334140439934E-4 78-79 3.216238551460325E-4 0.0012357127066137037 0.0 0.6950799336845466 3.89334140439934E-4 80-81 3.216238551460325E-4 0.0012357127066137037 0.0 0.6961548344635873 3.977979261016717E-4 82-83 3.2585574797690134E-4 0.0012357127066137037 0.0 0.6966118788893212 4.3588496157949137E-4 84-85 3.4701521213124556E-4 0.0012441764922754414 0.0 0.6970943146720401 4.401168544103602E-4 86-87 3.554789977929833E-4 0.00128649542058413 0.0 0.6972847498494292 4.443487472412291E-4 88-89 3.6394278345472093E-4 0.0013542057058780314 0.0 0.6973143730992454 4.570444257338356E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 17025 0.0 51.869713 1 GTATCAA 32130 0.0 39.47206 1 ATCAACG 38875 0.0 32.099087 3 TCAACGC 39015 0.0 32.08246 4 CAACGCA 39695 0.0 31.47824 5 TATCAAC 40275 0.0 31.177134 2 AACGCAG 41085 0.0 30.479641 6 ACGCAGA 46345 0.0 26.992247 7 CTTATAC 19460 0.0 26.924477 1 CGCAGAG 47420 0.0 26.479877 8 GTGGTAT 8355 0.0 24.451056 1 TGGTATC 8090 0.0 23.80442 2 GCAGAGT 54320 0.0 23.068394 9 TATACAC 24545 0.0 22.989918 3 TTATACA 25060 0.0 21.617456 2 GAGTACT 34000 0.0 21.009094 12-13 CAGAGTA 53265 0.0 19.965178 10-11 AGAGTAC 50090 0.0 19.101994 10-11 GTACTTT 37250 0.0 19.019562 14-15 ACACATC 28570 0.0 18.782612 6 >>END_MODULE