##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139493_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10717355 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.69374934393794 30.0 18.0 33.0 18.0 33.0 2 27.857846362278753 29.0 25.0 32.0 18.0 33.0 3 27.66630413940753 29.0 25.0 31.0 18.0 33.0 4 30.810410964272435 33.0 30.0 33.0 27.0 33.0 5 31.694738860474438 33.0 32.0 33.0 30.0 33.0 6 35.76352085006049 38.0 36.0 38.0 31.0 38.0 7 36.02211375847865 38.0 36.0 38.0 32.0 38.0 8 36.46833542417882 38.0 37.0 38.0 34.0 38.0 9 36.710721815224 38.0 38.0 38.0 34.0 38.0 10-11 36.777162835419745 38.0 38.0 38.0 34.5 38.0 12-13 36.83355650717924 38.0 38.0 38.0 35.0 38.0 14-15 36.82922787385507 38.0 38.0 38.0 35.0 38.0 16-17 36.84309547458305 38.0 38.0 38.0 35.0 38.0 18-19 36.85761132294302 38.0 38.0 38.0 35.0 38.0 20-21 36.87278380604843 38.0 38.0 38.0 35.0 38.0 22-23 36.882811683151175 38.0 38.0 38.0 35.0 38.0 24-25 36.88023489562133 38.0 38.0 38.0 35.0 38.0 26-27 36.83154365835273 38.0 38.0 38.0 35.0 38.0 28-29 36.82202271033448 38.0 38.0 38.0 35.0 38.0 30-31 36.807019204607364 38.0 38.0 38.0 35.0 38.0 32-33 36.77981180422928 38.0 38.0 38.0 35.0 38.0 34-35 36.74768824022982 38.0 38.0 38.0 35.0 38.0 36-37 36.71800300644655 38.0 38.0 38.0 34.0 38.0 38-39 36.68811722647579 38.0 38.0 38.0 34.0 38.0 40-41 36.70658064276536 38.0 38.0 38.0 34.0 38.0 42-43 36.662408550752275 38.0 38.0 38.0 34.0 38.0 44-45 36.61300888255669 38.0 38.0 38.0 34.0 38.0 46-47 36.567021314405686 38.0 38.0 38.0 34.0 38.0 48-49 36.51906990962381 38.0 38.0 38.0 34.0 38.0 50-51 36.49675135413683 38.0 38.0 38.0 34.0 38.0 52-53 36.47060430320407 38.0 38.0 38.0 34.0 38.0 54-55 36.39966702832717 38.0 38.0 38.0 34.0 38.0 56-57 36.40575561362845 38.0 38.0 38.0 34.0 38.0 58-59 36.396978709032034 38.0 38.0 38.0 34.0 38.0 60-61 36.35621464939646 38.0 38.0 38.0 33.5 38.0 62-63 36.36369247508756 38.0 38.0 38.0 33.5 38.0 64-65 36.38767005873321 38.0 38.0 38.0 34.0 38.0 66-67 36.36481246604697 38.0 38.0 38.0 34.0 38.0 68-69 36.34602122791678 38.0 38.0 38.0 33.5 38.0 70-71 36.34115410030787 38.0 38.0 38.0 33.5 38.0 72-73 36.33147187863956 38.0 38.0 38.0 33.0 38.0 74-75 36.3213847631623 38.0 38.0 38.0 33.0 38.0 76-77 36.287183646239434 38.0 37.5 38.0 33.0 38.0 78-79 36.28505320850752 38.0 37.0 38.0 33.0 38.0 80-81 36.27750970133053 38.0 37.0 38.0 33.0 38.0 82-83 36.25053897410449 38.0 37.0 38.0 33.0 38.0 84-85 36.20989483135094 38.0 37.0 38.0 33.0 38.0 86-87 36.22437069072197 38.0 37.0 38.0 33.0 38.0 88-89 36.22175249694267 38.0 37.0 38.0 33.0 38.0 90-91 36.213728324040574 38.0 37.0 38.0 33.0 38.0 92-93 36.201588431278054 38.0 37.0 38.0 33.0 38.0 94-95 36.186695645259626 38.0 37.0 38.0 33.0 38.0 96-97 36.18426783336403 38.0 37.0 38.0 33.0 38.0 98-99 36.23027398574299 38.0 37.0 38.0 33.0 38.0 100-101 35.70745275177115 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 5.0 18 48.0 19 144.0 20 321.0 21 810.0 22 2616.0 23 6928.0 24 15598.0 25 29560.0 26 49156.0 27 74843.0 28 105992.0 29 142857.0 30 184439.0 31 232808.0 32 296606.0 33 386410.0 34 542131.0 35 872472.0 36 2077561.0 37 5696050.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.61919848694011 18.235674753705556 13.529084368297962 21.616042391056375 2 14.937864799663721 20.05978154124782 40.59892576106698 24.40342789802148 3 20.215302365916795 25.219504056782448 29.33751567819471 25.227677899106048 4 13.19137044541307 17.928863978099074 38.592460546468786 30.28730503001907 5 14.07963353133066 37.86138805721051 34.1508050385335 13.908173372925331 6 30.33188692545875 37.14551771402552 18.429612530330477 14.092982830185246 7 27.009013548314858 32.87300787519128 21.993085880640464 18.124892695853394 8 24.315439770353787 36.85799341348682 20.517049215967933 18.309517600191466 9 25.3936255727276 17.709266885346246 21.07189693725737 35.82521060466878 10-11 24.4662465692328 26.823353336714145 28.037066981545355 20.673333112507702 12-13 25.337403678426252 24.167348193654124 28.39961912244206 22.095629005477562 14-15 22.5022545208216 25.531612044203072 26.196570888992664 25.76956254598266 16-17 21.950812490581864 28.846847006560854 26.8639557054889 22.33838479736838 18-19 21.93557085680189 27.720053128780375 28.788772976168094 21.555603038249643 20-21 22.72095510578268 26.77914228496182 28.891198792588042 21.608703816667465 22-23 22.436787364672163 26.823630949095502 28.73662818385545 22.002953502376887 24-25 22.256028990295196 26.948249747324155 28.91000820321577 21.88571305916488 26-27 22.223625399170395 27.05804289670605 28.86682976498591 21.851501939137652 28-29 22.183544648026267 26.998534601157687 28.880607365780197 21.937313385035846 30-31 22.325764586931896 27.03291197726152 28.8788481906043 21.762475245202282 32-33 22.235243689642466 27.186619228289565 28.696092634498697 21.882044447569264 34-35 22.397621789644305 27.05584977554708 28.78752067403586 21.759007760772754 36-37 22.152550738737023 27.11576211393042 28.749247036073562 21.982440111259 38-39 21.995403957311574 27.053858055702108 28.908474181520727 22.042263805465595 40-41 22.340611974773754 26.83587386725988 28.8028139248498 22.020700233116568 42-43 22.247935750148574 26.9329133040435 28.66659211280816 22.152558832999773 44-45 22.176225707675652 27.119524837515286 28.571129009344954 22.133120445464105 46-47 22.39334274431411 26.970531617391686 28.191816062220354 22.444309576073852 48-49 22.30697014075985 27.066722429438588 28.177344032496805 22.44896339730475 50-51 22.174498986201954 27.21767859713028 28.234437140401198 22.373385276266568 52-53 22.31490213781606 27.228258683341306 28.217448675181778 22.23939050366086 54-55 22.354926335375115 27.096834675091046 28.097797274628505 22.45044171490533 56-57 22.421157677199837 27.34047227665958 27.90608861121338 22.332281434927207 58-59 22.173245515710686 27.520778412489012 28.186401947247113 22.119574124553193 60-61 22.40055274817749 27.65110405180217 27.894753659848547 22.05358954017179 62-63 22.176814790542664 27.902167400076394 27.85039367163361 22.070624137747327 64-65 22.09592016189741 27.830876635619884 27.858553576437505 22.214649626045198 66-67 22.22843541527009 27.832100513590646 27.694463239731064 22.245000831408195 68-69 22.182832632892733 27.668288976789253 27.830305248752694 22.31857314156532 70-71 22.219647489508436 27.310617930337834 27.938807063314115 22.530927516839615 72-73 22.32047430547219 27.24321582524027 27.88103418214139 22.55527568714615 74-75 22.200729547318307 27.359235912046877 27.90095019341506 22.53908434721976 76-77 22.425657502599698 27.311348032793514 27.748915984125976 22.51407848048081 78-79 22.347321120044086 27.35363022522281 27.670647622914192 22.628401031818914 80-81 22.377427595944102 27.375899797408277 27.668529186981715 22.578143419665906 82-83 22.433862582976495 27.370026271780183 27.781119602828852 22.414991542414466 84-85 22.560232975891108 27.382215917281133 27.666581072881876 22.39097003394588 86-87 22.396854686343712 27.42899134708007 27.696291559808593 22.477862406767624 88-89 22.453492471811334 27.406550022847835 27.740772140946806 22.39918536439402 90-91 22.477665847952373 27.45576050857681 27.702962883135406 22.363610760335412 92-93 22.5586482466404 27.38333479543136 27.723546544740525 22.334470413187717 94-95 22.439690078216934 27.553684514072003 27.646488123754594 22.360137283956472 96-97 22.45091349772342 27.53530969623431 27.69695149139609 22.316825314646184 98-99 22.635607361921753 28.0659993132055 27.79509634228457 21.50329698258818 100-101 23.296255816864164 30.57411896422947 25.109646781994442 21.01997843691192 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2278.0 1 1986.5 2 2381.5 3 3361.0 4 4076.5 5 5720.0 6 7839.5 7 10653.5 8 14988.0 9 17959.5 10 17014.5 11 15169.5 12 15666.0 13 18640.5 14 24933.5 15 32797.0 16 39825.5 17 45562.5 18 47514.5 19 45002.5 20 40671.5 21 36799.0 22 35651.5 23 38701.0 24 46072.0 25 58370.5 26 74918.0 27 93759.5 28 114840.0 29 137556.5 30 159908.5 31 182356.5 32 205640.5 33 229749.0 34 253393.5 35 275075.5 36 300002.0 37 324403.5 38 342741.5 39 359686.5 40 377501.5 41 393367.0 42 404098.5 43 416150.5 44 443724.5 45 463691.0 46 460031.5 47 453489.0 48 448393.5 49 443324.0 50 437911.0 51 429214.5 52 412427.5 53 391208.0 54 370502.0 55 346741.0 56 319622.5 57 290965.5 58 261262.0 59 228293.5 60 191111.5 61 154809.0 62 122278.0 63 94866.0 64 72654.5 65 55070.0 66 41821.5 67 31312.0 68 23300.0 69 17682.5 70 12748.5 71 8744.5 72 6053.0 73 4046.5 74 2562.5 75 1526.5 76 956.0 77 584.5 78 348.0 79 210.5 80 137.0 81 101.0 82 76.0 83 51.0 84 33.5 85 24.0 86 14.0 87 7.0 88 6.5 89 6.5 90 5.5 91 4.5 92 3.0 93 2.5 94 2.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0022486891588456293 4 0.0 5 0.03805976381299304 6 0.0 7 0.0014462523635729151 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 3.7323385158253254E-5 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 5.734221645258015E-4 48-49 1.420518349104924E-4 50-51 4.045998263477282E-4 52-53 0.0011273230987956663 54-55 0.002918245988248763 56-57 0.002490243652985201 58-59 0.006529913691663655 60-61 0.005890161653802227 62-63 0.006612694872672714 64-65 0.0037775187577901606 66-67 0.00625347182716826 68-69 0.006272839365889862 70-71 0.0032866334378777997 72-73 0.002532329496369232 74-75 0.0036397268031926376 76-77 0.0022519801398364603 78-79 0.0 80-81 5.973815704993998E-4 82-83 2.4236940784024452E-4 84-85 0.0 86-87 0.0 88-89 0.0 90-91 1.758029094678305E-5 92-93 6.871122443461176E-4 94-95 8.981565874935648E-5 96-97 0.0 98-99 6.253819520272006E-6 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 123.0 20-21 532.0 22-23 1163.0 24-25 1223.0 26-27 2935.0 28-29 6695.0 30-31 17883.0 32-33 23810.0 34-35 33534.0 36-37 51791.0 38-39 58495.0 40-41 59112.0 42-43 67981.0 44-45 81554.0 46-47 83418.0 48-49 76372.0 50-51 67797.0 52-53 60752.0 54-55 66130.0 56-57 67757.0 58-59 73632.0 60-61 72909.0 62-63 72803.0 64-65 85109.0 66-67 92605.0 68-69 90178.0 70-71 101760.0 72-73 76490.0 74-75 77173.0 76-77 82096.0 78-79 86119.0 80-81 86097.0 82-83 81724.0 84-85 80882.0 86-87 84361.0 88-89 89314.0 90-91 91515.0 92-93 90156.0 94-95 96126.0 96-97 158617.0 98-99 910531.0 100-101 7208101.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.05216394226605 #Duplication Level Percentage of deduplicated Percentage of total 1 88.65272322478666 73.62800503193318 2 7.801999653028862 12.959459085217118 3 1.9229091330589685 4.791052936946824 4 0.7054908681219141 2.343701729561312 5 0.34514899043095276 1.4332685268889553 6 0.18182425918103792 0.9060538909310781 7 0.1057283674564253 0.6146678795137427 8 0.07051897379713191 0.46854026982718117 9 0.045492172888899764 0.3400401060772933 >10 0.16307986290251555 2.0581926698467496 >50 0.0037291797754518546 0.20585564681846355 >100 0.0012948311921576387 0.1772865882439005 >500 2.016112698934263E-5 0.016526576960679926 >1k 4.03222521385257E-5 0.05734906123349021 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.799198123044352E-5 2 0.0 2.799198123044352E-5 0.0 0.0 2.799198123044352E-5 3 0.0 2.799198123044352E-5 0.0 0.0 2.799198123044352E-5 4 0.0 1.2129858533192192E-4 0.0 9.33066041014784E-6 2.799198123044352E-5 5 0.0 1.3062924574206976E-4 0.0 9.33066041014784E-6 2.799198123044352E-5 6 8.397594369133056E-5 1.3062924574206976E-4 0.0 9.33066041014784E-6 3.732264164059136E-5 7 8.397594369133056E-5 1.3062924574206976E-4 0.0 9.33066041014784E-6 3.732264164059136E-5 8 8.397594369133056E-5 1.4929056656236544E-4 0.0 1.866132082029568E-5 4.66533020507392E-5 9 8.397594369133056E-5 3.545650955856179E-4 0.0 5.598396246088704E-5 5.598396246088704E-5 10-11 8.864127389640448E-5 3.545650955856179E-4 0.0 8.397594369133056E-5 5.598396246088704E-5 12-13 9.797193430655232E-5 3.545650955856179E-4 0.0 9.33066041014784E-5 6.064929266596096E-5 14-15 1.1196792492177408E-4 5.038556621479834E-4 0.0 9.797193430655232E-5 6.99799530761088E-5 16-17 1.1196792492177408E-4 5.318476433784268E-4 0.0 1.2129858533192192E-4 8.397594369133056E-5 18-19 1.16633255126848E-4 5.738356152240921E-4 0.0 1.632865571775872E-4 1.2596391553699584E-4 20-21 1.2596391553699584E-4 6.251542474799052E-4 0.0 1.9127853840803072E-4 1.3062924574206976E-4 22-23 1.3062924574206976E-4 6.904688703509402E-4 0.0 2.099398592283264E-4 1.5862122697251328E-4 24-25 1.4462523635729152E-4 7.604488234270489E-4 0.0 2.7525448209936125E-4 1.9594386861310464E-4 26-27 1.5862122697251328E-4 8.11767455682862E-4 0.0 3.8722240702113533E-4 2.0527452902325248E-4 28-29 1.5862122697251328E-4 8.257634462980838E-4 0.0 7.884408046574924E-4 2.0527452902325248E-4 30-31 1.5862122697251328E-4 0.0010030459940908927 0.0 0.0021367212339238554 2.0527452902325248E-4 32-33 1.7261721758773504E-4 0.0010170419847061146 0.0 0.004823951432046433 2.2393584984354816E-4 34-35 1.9594386861310464E-4 0.0011430059002431104 0.0 0.008612199558566456 2.2393584984354816E-4 36-37 2.099398592283264E-4 0.0012596391553699583 0.0 0.014695790145982848 2.4259717066384384E-4 38-39 2.1460518943340032E-4 0.0013062924574206976 0.0 0.025468037589498525 2.519278310739917E-4 40-41 2.1927051963847424E-4 0.0014742443448033586 0.0 0.05335271622522535 2.612584914841395E-4 42-43 2.33266510253696E-4 0.0015348936374693196 0.0 0.06349047876085097 2.7525448209936125E-4 44-45 2.3793184045876992E-4 0.0017028455248519806 0.0 0.07705725899720593 2.985811331247309E-4 46-47 2.612584914841395E-4 0.0018101481195686808 0.0 0.09228023145636213 3.3590377476532224E-4 48-49 2.612584914841395E-4 0.0018241441101839026 0.0 0.10737257466977626 3.732264164059136E-4 50-51 2.612584914841395E-4 0.0021553825547441507 0.0 0.12151785585156039 3.8255707681606144E-4 52-53 2.6592382168921346E-4 0.0021833745359745946 0.0 0.14379947291099343 4.05883727841431E-4 54-55 2.7058915189428736E-4 0.00220203585679489 0.0 0.1959531992735148 4.338757090718746E-4 56-57 2.7058915189428736E-4 0.0022300278380253335 0.0 0.254475101365962 4.4320636948202237E-4 58-59 2.7525448209936125E-4 0.0022533544890507035 0.0 0.31994834546396944 4.478716996870963E-4 60-61 2.9391580291965693E-4 0.002318669111921738 0.0 0.33755530165791836 4.5720236009724416E-4 62-63 3.219077841501005E-4 0.002337330432742034 0.0 0.3518965267083156 4.5720236009724416E-4 64-65 3.265731143551744E-4 0.002612584914841395 0.0 0.35938438168745923 4.6186769030231805E-4 66-67 3.265731143551744E-4 0.0026265809054566167 0.0 0.36468886213062834 4.7119835071246594E-4 68-69 3.312384445602483E-4 0.002659238216892134 0.0 0.36999800790400245 4.7586368091753984E-4 70-71 3.405691049703962E-4 0.0026825648679175036 0.0 0.3752325083940954 4.898596715327615E-4 72-73 3.452344351754701E-4 0.0027058915189428737 0.0 0.37939864826722636 5.22516982968279E-4 74-75 3.452344351754701E-4 0.0027572101511986868 0.0 0.3826317220993426 5.22516982968279E-4 76-77 3.452344351754701E-4 0.002841186094890017 0.0 0.38535627493910574 5.22516982968279E-4 78-79 3.452344351754701E-4 0.0028925047271458303 0.0 0.38761896008856667 5.22516982968279E-4 80-81 3.452344351754701E-4 0.002897170057350904 0.0 0.38881328462106557 5.551742944037964E-4 82-83 3.452344351754701E-4 0.002901835387555978 0.0 0.3892005070280867 5.971622662494618E-4 84-85 3.4989976538054397E-4 0.0029251620385813476 0.0 0.38958772943510783 6.064929266596096E-4 86-87 3.545650955856179E-4 0.0029391580291965695 0.0 0.38972302401105496 6.158235870697574E-4 88-89 3.545650955856179E-4 0.0031211059071944523 0.0 0.3898256612755666 6.251542474799052E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16435 0.0 52.33413 1 GTATCAA 30075 0.0 38.38195 1 TCAACGC 35040 0.0 33.215256 4 ATCAACG 35200 0.0 32.8923 3 CAACGCA 36060 0.0 32.263687 5 TATCAAC 35680 0.0 32.060596 2 AACGCAG 37160 0.0 31.35458 6 GTGGTAT 7265 0.0 28.01485 1 TGGTATC 6960 0.0 27.683739 2 ACGCAGA 42920 0.0 27.116375 7 CGCAGAG 43840 0.0 26.616219 8 GCAGAGT 50005 0.0 23.369467 9 CTTATAC 11390 0.0 22.783922 1 GAGTACT 29325 0.0 21.77381 12-13 CAGAGTA 48850 0.0 20.614305 10-11 GTACTTT 32060 0.0 19.788052 14-15 TATACAC 15715 0.0 19.495813 3 GTACATG 36070 0.0 18.624126 1 AGAGTAC 45765 0.0 18.136757 10-11 TACATGG 36110 0.0 18.03866 2 >>END_MODULE