##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139492_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12413188 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.33383567541231 30.0 18.0 32.0 18.0 33.0 2 27.515796586662507 29.0 25.0 32.0 18.0 33.0 3 27.332694469784876 29.0 25.0 31.0 18.0 33.0 4 30.69791523337921 32.0 30.0 33.0 27.0 33.0 5 31.6517701173945 33.0 32.0 33.0 29.0 33.0 6 35.74371241295951 38.0 36.0 38.0 31.0 38.0 7 36.01789991418804 38.0 36.0 38.0 32.0 38.0 8 36.474572607778114 38.0 37.0 38.0 34.0 38.0 9 36.7184872250384 38.0 38.0 38.0 34.0 38.0 10-11 36.78242196927977 38.0 38.0 38.0 34.5 38.0 12-13 36.83766043823714 38.0 38.0 38.0 35.0 38.0 14-15 36.831334061805876 38.0 38.0 38.0 35.0 38.0 16-17 36.841812554518626 38.0 38.0 38.0 35.0 38.0 18-19 36.8581779314065 38.0 38.0 38.0 35.0 38.0 20-21 36.87330641162285 38.0 38.0 38.0 35.0 38.0 22-23 36.88380073349019 38.0 38.0 38.0 35.0 38.0 24-25 36.876040695540055 38.0 38.0 38.0 35.0 38.0 26-27 36.82901344839894 38.0 38.0 38.0 35.0 38.0 28-29 36.81889298155858 38.0 38.0 38.0 35.0 38.0 30-31 36.80243751527503 38.0 38.0 38.0 35.0 38.0 32-33 36.77978289742438 38.0 38.0 38.0 35.0 38.0 34-35 36.74366520662629 38.0 38.0 38.0 35.0 38.0 36-37 36.71835532712505 38.0 38.0 38.0 34.0 38.0 38-39 36.68293349135388 38.0 38.0 38.0 34.0 38.0 40-41 36.70346588714526 38.0 38.0 38.0 34.0 38.0 42-43 36.661545008575814 38.0 38.0 38.0 34.0 38.0 44-45 36.60812003455515 38.0 38.0 38.0 34.0 38.0 46-47 36.55862174331722 38.0 38.0 38.0 34.0 38.0 48-49 36.50942541731508 38.0 38.0 38.0 34.0 38.0 50-51 36.48647885500198 38.0 38.0 38.0 34.0 38.0 52-53 36.46041435805135 38.0 38.0 38.0 34.0 38.0 54-55 36.39108288417168 38.0 38.0 38.0 34.0 38.0 56-57 36.397988627402064 38.0 38.0 38.0 34.0 38.0 58-59 36.38910054452795 38.0 38.0 38.0 34.0 38.0 60-61 36.34995164235161 38.0 38.0 38.0 33.5 38.0 62-63 36.35780048190303 38.0 38.0 38.0 33.5 38.0 64-65 36.38110395599486 38.0 38.0 38.0 34.0 38.0 66-67 36.358523500715606 38.0 38.0 38.0 34.0 38.0 68-69 36.33791141082695 38.0 38.0 38.0 33.5 38.0 70-71 36.33733017985821 38.0 38.0 38.0 33.5 38.0 72-73 36.32662371463805 38.0 38.0 38.0 33.0 38.0 74-75 36.31859447156122 38.0 38.0 38.0 33.0 38.0 76-77 36.286210840429106 38.0 37.5 38.0 33.0 38.0 78-79 36.284113826786154 38.0 37.0 38.0 33.0 38.0 80-81 36.2793589522671 38.0 37.0 38.0 33.0 38.0 82-83 36.25169995966198 38.0 37.0 38.0 33.0 38.0 84-85 36.21391356563784 38.0 37.0 38.0 33.0 38.0 86-87 36.23003192179041 38.0 37.0 38.0 33.0 38.0 88-89 36.229381758535396 38.0 37.0 38.0 33.0 38.0 90-91 36.217980923840784 38.0 37.0 38.0 33.0 38.0 92-93 36.20956340160171 38.0 37.0 38.0 33.0 38.0 94-95 36.197391575182905 38.0 37.0 38.0 33.0 38.0 96-97 36.19415136566373 38.0 37.0 38.0 33.0 38.0 98-99 36.239937018890316 38.0 37.0 38.0 33.0 38.0 100-101 35.712166770461415 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 56.0 19 208.0 20 473.0 21 959.0 22 3082.0 23 8219.0 24 18425.0 25 34699.0 26 57257.0 27 87251.0 28 124120.0 29 166745.0 30 213024.0 31 269929.0 32 343317.0 33 448775.0 34 629183.0 35 1020077.0 36 2458432.0 37 6528956.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.84821497910126 18.37939617123337 13.63909094102176 21.133297908643613 2 14.736391650557456 20.215346774736677 40.81233604131348 24.23592553339239 3 20.028602391631704 25.695314279895477 29.627836997303135 24.64824633116968 4 12.905089329187636 18.347486560261554 39.16151112832578 29.585912982225032 5 13.740106991605927 38.22468172773529 34.37616073385014 13.659050546808645 6 29.557564100374538 37.76253932511133 18.774596823958518 13.905299750555619 7 26.50636089759888 33.21321759686677 22.416625500240553 17.863796005293793 8 24.020501421552627 37.00233976960632 20.881622029731606 18.095536779109445 9 25.238367452422377 17.79264118129847 21.41064809459101 35.558343271688145 10-11 24.09565633323431 27.077183036186312 28.37633363710973 20.450826993469647 12-13 25.063522161411 24.523165383589028 28.691740135239236 21.72157231976074 14-15 22.287942216280513 25.900024852606325 26.518016931190502 25.294015999922664 16-17 21.530041275456394 29.21157723543702 27.232645634626657 22.025735854479926 18-19 21.493024193301512 28.036423842126617 29.258164784098977 21.2123871804729 20-21 22.361418312692248 27.07455777171249 29.344038697792286 21.21998521780297 22-23 22.073013051772957 27.169375515450948 29.175451295648262 21.58216013712783 24-25 21.82132733562224 27.373710234474842 29.335246032376244 21.46971639752667 26-27 21.738078241799048 27.59082900887156 29.2288956944172 21.44219705491219 28-29 21.662701536700652 27.45895261155432 29.333455492361683 21.54489035938334 30-31 22.03913874319073 27.281089306939826 29.255894446511583 21.42387750335786 32-33 21.744686804601596 27.437416366293892 29.25203541688422 21.565861412220293 34-35 21.870328037279332 27.27254535506522 29.2939948983438 21.563131709311648 36-37 21.72915281059808 27.384668527881683 29.25233446555756 21.633844195962673 38-39 21.599577606183125 27.311473568216705 29.45253226931487 21.636416556285305 40-41 21.870692774450053 27.150175002485543 29.36537970399901 21.613752519065393 42-43 21.866773406487336 27.17255168771466 29.210456824020625 21.750218081777383 44-45 21.821756835795135 27.423137404823294 29.011509482180998 21.743596277200577 46-47 22.02831008419219 27.257415638677017 28.61525982096218 22.09901445616861 48-49 21.94191641867571 27.339806179636906 28.63622732772314 22.08205007396424 50-51 21.835404204534584 27.51364742813591 28.635915857567724 22.015032509761777 52-53 21.94266950447737 27.52242795431649 28.66679771324716 21.868104827958977 54-55 21.997768252773305 27.46025537469935 28.47575334175224 22.066223030775102 56-57 22.070428038875566 27.721113074304515 28.278616072632317 21.9298428141876 58-59 21.809098557818192 27.87125010036971 28.57574509235759 21.74390624945451 60-61 22.025836361447446 28.078768020284333 28.198723403264015 21.696672215004213 62-63 21.77375138421237 28.32125521520219 28.200490267523783 21.70450313306166 64-65 21.75529582627647 28.18622717177831 28.193506688725268 21.86497031321995 66-67 21.849922804259812 28.177381256588056 28.076729316442588 21.895966622709544 68-69 21.807783507274305 28.0594485309737 28.18824747153812 21.944520490213876 70-71 21.86297478545267 27.713485179599108 28.300999074765006 22.12254096018322 72-73 21.96789349556379 27.621266900724926 28.26705707588667 22.143782527824605 74-75 21.86898409914466 27.746488863270883 28.236059370469967 22.14846766711448 76-77 22.03185729893201 27.651479402549956 28.16735035607747 22.149312942440563 78-79 22.025079003257584 27.643650443713668 28.05472171481339 22.27654883821535 80-81 21.965211242545287 27.75089017015297 28.06821512414973 22.215683463152015 82-83 22.060515632108803 27.691162777362184 28.152107277949217 22.096214312579797 84-85 22.182092630110407 27.684507222862326 28.04607427765146 22.087325869375807 86-87 22.03534096295394 27.746128262659138 28.097269031181547 22.121261743205377 88-89 22.117389043399083 27.766756118830312 28.07487724337853 22.04097759439207 90-91 22.128250458322007 27.831062362084502 28.030970964368677 22.009716215224813 92-93 22.1958379778231 27.77410727275103 28.03812938588697 21.991925363538904 94-95 22.05845666501965 27.81453267550038 28.0724342618462 22.054576397633767 96-97 22.124255867015513 27.838777807800398 28.01509955620117 22.02186676898292 98-99 22.280163047355988 28.406589875343297 28.155362358274793 21.157884719025922 100-101 22.926464075518506 30.891790712317846 25.538260531752016 20.64348468041163 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2552.0 1 2361.5 2 3057.5 3 4309.0 4 5299.0 5 7560.5 6 10218.5 7 13409.0 8 18128.5 9 21286.5 10 20389.0 11 18610.5 12 19687.5 13 23977.0 14 32753.0 15 43542.5 16 52669.0 17 59491.0 18 61417.0 19 57908.0 20 51935.5 21 46053.5 22 43522.5 23 46819.0 24 55674.5 25 70597.5 26 90205.0 27 112444.0 28 137857.5 29 165997.0 30 194216.0 31 224675.5 32 257424.5 33 289805.5 34 320723.5 35 349338.0 36 379793.5 37 407090.5 38 428687.0 39 448074.0 40 465246.0 41 479684.0 42 489116.5 43 502020.5 44 531453.5 45 549866.0 46 540589.0 47 524844.0 48 510645.5 49 498222.0 50 484909.0 51 467620.5 52 445903.0 53 421993.0 54 396578.0 55 368005.0 56 335163.0 57 299061.5 58 264902.0 59 229649.0 60 190551.5 61 153504.5 62 120341.0 63 92664.5 64 69337.0 65 50852.0 66 37744.0 67 28785.0 68 21990.0 69 16041.0 70 11699.0 71 8404.0 72 5671.5 73 3708.5 74 2429.5 75 1519.5 76 930.5 77 563.5 78 375.5 79 245.5 80 158.0 81 108.0 82 69.0 83 50.0 84 39.5 85 25.5 86 18.5 87 13.0 88 8.0 89 3.5 90 3.0 91 4.0 92 4.0 93 3.0 94 1.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0019334275771864568 4 0.0 5 0.03666262043239819 6 0.0 7 0.0012889517181243046 8 0.0 9 0.0 10-11 4.027974119138452E-6 12-13 4.027974119138452E-6 14-15 2.416784471483071E-5 16-17 0.0 18-19 0.0 20-21 2.0140326516584712E-5 22-23 8.056674191197528E-6 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 5.155675193301143E-4 48-49 1.3519463676116237E-4 50-51 5.105951906017806E-4 52-53 9.804848407624113E-4 54-55 0.002803926944910976 56-57 0.002431896178060577 58-59 0.0062225347744130416 60-61 0.005388493456782282 62-63 0.006025266363479041 64-65 0.003563803160491259 66-67 0.005922204730617537 68-69 0.006233723654395999 70-71 0.0032454473534731017 72-73 0.002507671109617118 74-75 0.003443546604431765 76-77 0.002035454315994765 78-79 0.0 80-81 5.086386516814682E-4 82-83 2.1794018723580503E-4 84-85 0.0 86-87 0.0 88-89 4.980540033979237E-6 90-91 2.0127218107492024E-5 92-93 6.762972066891388E-4 94-95 1.2848550994382766E-4 96-97 0.0 98-99 5.364670159961052E-6 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 169.0 20-21 640.0 22-23 1378.0 24-25 1533.0 26-27 3288.0 28-29 7800.0 30-31 19902.0 32-33 26804.0 34-35 37640.0 36-37 57382.0 38-39 64886.0 40-41 66906.0 42-43 77523.0 44-45 94190.0 46-47 95998.0 48-49 86690.0 50-51 75882.0 52-53 67841.0 54-55 73646.0 56-57 74427.0 58-59 81477.0 60-61 82772.0 62-63 82190.0 64-65 97816.0 66-67 104910.0 68-69 102648.0 70-71 118220.0 72-73 86072.0 74-75 87731.0 76-77 92771.0 78-79 97546.0 80-81 97161.0 82-83 92929.0 84-85 93152.0 86-87 97008.0 88-89 101504.0 90-91 104222.0 92-93 103155.0 94-95 111255.0 96-97 184131.0 98-99 1047769.0 100-101 8412224.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.084719296372 #Duplication Level Percentage of deduplicated Percentage of total 1 88.51679257126555 73.54392863798785 2 7.825309947781733 13.003273608371055 3 1.9802986843135355 4.935976809274946 4 0.7701785845905703 2.559602860351385 5 0.34984283867184635 1.4533297024448155 6 0.18755097226786718 0.9349571930782437 7 0.10312130192393415 0.5997463096678546 8 0.07266288340611048 0.4829740216849357 9 0.04804537242536227 0.3592652653305788 >10 0.14259212816094324 1.8148819399128342 >50 0.0027990859617133125 0.15954354111807229 >100 7.206789936577434E-4 0.0982183340332832 >500 5.097682330840196E-5 0.024014511277163905 >1k 3.397341390469627E-5 0.030287265466976764 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.6111896476553807E-5 0.0 8.055948238276904E-6 0.0 3 0.0 1.6111896476553807E-5 0.0 8.055948238276904E-6 0.0 4 0.0 5.6391637667938325E-5 0.0 8.055948238276904E-6 0.0 5 0.0 5.6391637667938325E-5 0.0 8.055948238276904E-6 0.0 6 6.444758590621523E-5 5.6391637667938325E-5 0.0 2.416784471483071E-5 0.0 7 6.444758590621523E-5 5.6391637667938325E-5 0.0 2.416784471483071E-5 0.0 8 6.444758590621523E-5 5.6391637667938325E-5 0.0 2.416784471483071E-5 0.0 9 6.444758590621523E-5 7.250353414449213E-5 0.0 2.416784471483071E-5 0.0 10-11 6.847556002535367E-5 7.250353414449213E-5 0.0 3.2223792953107615E-5 0.0 12-13 7.250353414449213E-5 7.250353414449213E-5 0.0 3.625176707224607E-5 0.0 14-15 7.250353414449213E-5 1.1278327533587665E-4 0.0 4.833568942966142E-5 0.0 16-17 1.1278327533587665E-4 1.168112494550151E-4 0.0 4.833568942966142E-5 0.0 18-19 1.1278327533587665E-4 1.2083922357415355E-4 0.0 4.833568942966142E-5 0.0 20-21 1.1278327533587665E-4 1.24867197693292E-4 0.0 5.6391637667938325E-5 0.0 22-23 1.1278327533587665E-4 1.5709099064639963E-4 0.0 6.847556002535367E-5 0.0 24-25 1.1278327533587665E-4 1.6514693888467651E-4 0.0 7.250353414449213E-5 0.0 26-27 1.1278327533587665E-4 1.6917491300381498E-4 0.0 1.6917491300381498E-4 0.0 28-29 1.1278327533587665E-4 1.6917491300381498E-4 0.0 5.478044802028294E-4 0.0 30-31 1.1278327533587665E-4 1.8528680948036878E-4 0.0 0.0016071616735362422 0.0 32-33 1.168112494550151E-4 1.8931478359950722E-4 0.0 0.0036855963190116836 0.0 34-35 1.2889517181243046E-4 2.1348262831433795E-4 0.0 0.006646157296578446 0.0 36-37 1.2889517181243046E-4 2.255665506717533E-4 0.0 0.011169572232370927 0.0 38-39 1.2889517181243046E-4 2.255665506717533E-4 0.0 0.02012778667333484 0.0 40-41 1.3695112005070737E-4 2.658462918631378E-4 0.0 0.04554833133921761 0.0 42-43 1.490350424081227E-4 2.739022401014147E-4 0.0 0.05426486733303322 0.0 44-45 1.5709099064639963E-4 2.9807008481624544E-4 0.0 0.06639712537987824 0.0 46-47 1.6111896476553807E-4 3.1418198129279926E-4 0.0 0.07966124415420116 0.0 48-49 1.6111896476553807E-4 3.1418198129279926E-4 0.0 0.09255478930956335 0.0 50-51 1.6111896476553807E-4 3.665456448415991E-4 0.0 0.10447759270221316 0.0 52-53 1.6111896476553807E-4 3.7057361896073755E-4 0.0 0.12460135140142886 0.0 54-55 1.6111896476553807E-4 3.7057361896073755E-4 0.0 0.17292495690873289 0.0 56-57 1.6514693888467651E-4 3.7057361896073755E-4 0.0 0.22748789432658234 0.0 58-59 1.6917491300381498E-4 3.8265754131815296E-4 0.0 0.2888017163681078 0.0 60-61 1.6917491300381498E-4 3.987694377947067E-4 0.0 0.3057111517202511 0.0 62-63 2.013987059569226E-4 4.027974119138452E-4 0.0 0.31532995391675367 0.0 64-65 2.013987059569226E-4 5.155806872497218E-4 0.0 0.32263267099475174 0.0 66-67 2.175106024334764E-4 5.155806872497218E-4 0.0 0.3275830511871729 0.0 68-69 2.255665506717533E-4 5.155806872497218E-4 0.0 0.3324528718972113 0.0 70-71 2.336224989100302E-4 5.196086613688602E-4 0.0 0.3371937974354372 0.0 72-73 2.4973439538658403E-4 5.236366354879988E-4 0.0 0.341145240046312 0.0 74-75 2.4973439538658403E-4 5.276646096071372E-4 0.0 0.3442387241698104 0.0 76-77 2.577903436248609E-4 5.397485319645525E-4 0.0 0.34683273950253557 0.0 78-79 2.577903436248609E-4 5.478044802028295E-4 0.0 0.34920118828458896 0.0 80-81 2.577903436248609E-4 5.478044802028295E-4 0.0 0.35028471332263716 0.0 82-83 2.577903436248609E-4 5.478044802028295E-4 0.0 0.35082848982872084 0.0 84-85 2.577903436248609E-4 5.478044802028295E-4 0.0 0.35122725926651555 0.0 86-87 2.6181831774399933E-4 5.478044802028295E-4 0.0 0.35141657405011506 0.0 88-89 2.7390224010141474E-4 5.800282731559371E-4 0.0 0.351472965687783 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 20240 0.0 53.027946 1 GTATCAA 36490 0.0 37.7113 1 TCAACGC 42490 0.0 32.467487 4 ATCAACG 42335 0.0 32.45329 3 CAACGCA 43190 0.0 31.890907 5 TATCAAC 43675 0.0 31.238438 2 AACGCAG 44825 0.0 30.726614 6 GTGGTAT 9025 0.0 28.875252 1 TGGTATC 8905 0.0 27.017014 2 ACGCAGA 51945 0.0 26.447998 7 CGCAGAG 53175 0.0 25.91749 8 GCAGAGT 60585 0.0 22.661448 9 CTTATAC 13525 0.0 21.776976 1 GAGTACT 35640 0.0 21.43328 12-13 CAGAGTA 59700 0.0 20.302095 10-11 GTACTTT 39030 0.0 19.555424 14-15 TATACAC 18845 0.0 19.115265 3 GTACATG 43520 0.0 19.01375 1 TACATGG 43270 0.0 18.520338 2 ACATGGG 43680 0.0 18.157255 3 >>END_MODULE