##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139491_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 13763229 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.641682050047994 30.0 18.0 32.0 18.0 33.0 2 27.76303860089809 29.0 25.0 32.0 18.0 33.0 3 27.560499211340595 29.0 25.0 31.0 18.0 33.0 4 30.73648058896644 32.0 30.0 33.0 27.0 33.0 5 31.63442648523831 33.0 32.0 33.0 29.0 33.0 6 35.71265318625448 38.0 36.0 38.0 31.0 38.0 7 35.97959025458343 38.0 36.0 38.0 31.0 38.0 8 36.43652278110028 38.0 37.0 38.0 34.0 38.0 9 36.68014330067457 38.0 38.0 38.0 34.0 38.0 10-11 36.7479430517359 38.0 38.0 38.0 34.0 38.0 12-13 36.807583634625274 38.0 38.0 38.0 35.0 38.0 14-15 36.7998541984588 38.0 38.0 38.0 35.0 38.0 16-17 36.81177215027084 38.0 38.0 38.0 35.0 38.0 18-19 36.82387305333654 38.0 38.0 38.0 35.0 38.0 20-21 36.83973514943132 38.0 38.0 38.0 35.0 38.0 22-23 36.84910455151945 38.0 38.0 38.0 35.0 38.0 24-25 36.84155975080256 38.0 38.0 38.0 35.0 38.0 26-27 36.79182151634721 38.0 38.0 38.0 35.0 38.0 28-29 36.78163381124545 38.0 38.0 38.0 35.0 38.0 30-31 36.7669024551445 38.0 38.0 38.0 35.0 38.0 32-33 36.750881986584176 38.0 38.0 38.0 35.0 38.0 34-35 36.72245036144392 38.0 38.0 38.0 34.5 38.0 36-37 36.693954369812054 38.0 38.0 38.0 34.0 38.0 38-39 36.677101371099944 38.0 38.0 38.0 34.0 38.0 40-41 36.66870548746789 38.0 38.0 38.0 34.0 38.0 42-43 36.621810098818116 38.0 38.0 38.0 34.0 38.0 44-45 36.57649648694762 38.0 38.0 38.0 34.0 38.0 46-47 36.54068520065229 38.0 38.0 38.0 34.0 38.0 48-49 36.50040508213051 38.0 38.0 38.0 34.0 38.0 50-51 36.48348890202803 38.0 38.0 38.0 34.0 38.0 52-53 36.46603341605041 38.0 38.0 38.0 34.0 38.0 54-55 36.39441444127837 38.0 38.0 38.0 34.0 38.0 56-57 36.398165278769405 38.0 38.0 38.0 34.0 38.0 58-59 36.391629339775335 38.0 38.0 38.0 34.0 38.0 60-61 36.3492571053914 38.0 38.0 38.0 33.5 38.0 62-63 36.35519190613806 38.0 38.0 38.0 33.5 38.0 64-65 36.378053147368746 38.0 38.0 38.0 34.0 38.0 66-67 36.358159297835826 38.0 38.0 38.0 34.0 38.0 68-69 36.34106918483651 38.0 38.0 38.0 33.5 38.0 70-71 36.33982800903972 38.0 38.0 38.0 33.0 38.0 72-73 36.33010057731738 38.0 38.0 38.0 33.0 38.0 74-75 36.31916365693203 38.0 37.5 38.0 33.0 38.0 76-77 36.28094566828782 38.0 37.0 38.0 33.0 38.0 78-79 36.276151474114975 38.0 37.0 38.0 33.0 38.0 80-81 36.2617575716055 38.0 37.0 38.0 33.0 38.0 82-83 36.22720539505463 38.0 37.0 38.0 33.0 38.0 84-85 36.18640250821689 38.0 37.0 38.0 33.0 38.0 86-87 36.20295951909554 38.0 37.0 38.0 33.0 38.0 88-89 36.19843040059704 38.0 37.0 38.0 33.0 38.0 90-91 36.18020658776212 38.0 37.0 38.0 33.0 38.0 92-93 36.16785466599521 38.0 37.0 38.0 33.0 38.0 94-95 36.14859231817219 38.0 37.0 38.0 33.0 38.0 96-97 36.13691554688701 38.0 37.0 38.0 33.0 38.0 98-99 36.18286239705782 38.0 37.0 38.0 33.0 38.0 100-101 35.63818274313928 38.0 36.0 38.0 30.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 16.0 18 41.0 19 69.0 20 191.0 21 796.0 22 3231.0 23 9316.0 24 21188.0 25 39569.0 26 65226.0 27 98909.0 28 138383.0 29 184937.0 30 237317.0 31 301543.0 32 385328.0 33 509554.0 34 716969.0 35 1158045.0 36 2715389.0 37 7177211.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.698757973147146 18.365595747916423 13.706325746668895 21.229320532267536 2 14.859645218429485 20.314426214952903 40.59465260659399 24.231275960023627 3 20.351083798554704 25.348292978948894 29.317708909304685 24.98291431319172 4 13.222580253514638 17.976493742856416 39.11225338181905 29.688672621809896 5 14.051332535592515 37.96111198857917 34.22315378398591 13.764401691842409 6 30.046531958452483 37.48817955437638 18.667792274618115 13.797496212553028 7 26.736455608111036 33.030560659611 22.509491193830193 17.723492538447772 8 23.982889480368303 37.187850322042884 20.700767240013228 18.12849295757558 9 25.181619807386767 18.041602010690948 21.550466100651235 35.22631208127105 10-11 24.249564700607856 27.094169801801954 28.2413969948984 20.414868502691792 12-13 25.050088173349437 24.55268672780203 28.679160246479952 21.71806485236858 14-15 22.248082190596406 26.013924494026803 26.537061179465955 25.200932135910836 16-17 21.598209257435155 29.14391673639958 27.299578463745682 21.958295542419588 18-19 21.522503912417644 28.214222113139293 29.182145410789868 21.081128563653195 20-21 22.392714201405266 27.23397790273075 29.27068575242385 21.10262214344013 22-23 22.14163236675667 27.148143406736924 29.104566800478658 21.605657426027744 24-25 21.876599420156907 27.284178302222976 29.197414737158667 21.641807540461443 26-27 21.74643866904682 27.3971738451123 29.12601845757704 21.73036902826384 28-29 21.71075393977531 27.373271631209338 29.229199563159558 21.6867748658558 30-31 21.971442265346774 27.280877448343894 29.128119486090277 21.619560800219055 32-33 21.778031138399918 27.433836354870373 29.029997328475698 21.758135178254012 34-35 21.95835496260512 27.449253256516936 29.012376997557975 21.580014783319964 36-37 21.938176869209624 27.349142928376548 28.942523042170524 21.770157160243304 38-39 21.73695223515912 27.548436821323936 29.023703931980798 21.69090701153615 40-41 21.991881838846915 27.35584799427977 28.896094241678504 21.756175925194807 42-43 21.870609209538408 27.46721673821137 28.779148425736494 21.88302562651373 44-45 21.9463295051522 27.576603106315318 28.60542584623169 21.871641542300793 46-47 22.018286089057256 27.582814829417345 28.348442213627088 22.050456867898312 48-49 21.95549455429207 27.668432044862527 28.36060811309671 22.015465287748697 50-51 21.977021744968862 27.81847693565475 28.218133406234468 21.986367913141915 52-53 22.170635429226856 27.852921087746594 27.892337995673156 22.08410548735339 54-55 22.182061718307697 27.782161620145153 27.907973053863543 22.127803607683607 56-57 22.095971787094104 27.853426002933755 27.943432701893613 22.10716950807853 58-59 22.053003417085552 27.844730459765287 28.006043967103047 22.096222156046114 60-61 22.064971594073743 27.705202979041676 28.112207387132194 22.117618039752383 62-63 22.168634560322452 27.76507826343751 28.106568344329226 21.959718831910816 64-65 21.963984903107008 27.722177442389956 28.066086554200993 22.247751100302047 66-67 22.00855206919983 27.821327043031612 27.892634980272813 22.277485907495745 68-69 21.96592471895602 27.964203879468354 27.957416383611537 22.112455017964088 70-71 21.949491491890072 27.764162005704495 28.026253430789627 22.260093071615806 72-73 22.014083866861515 27.795892825310077 27.775424442429603 22.414598865398805 74-75 21.907253451223415 27.910571297682896 27.756501979364522 22.425673271729167 76-77 22.10394033222835 27.67243366193196 27.83958991135916 22.384036094480532 78-79 22.049694812697833 27.68949467572704 27.769043230400868 22.49176728117426 80-81 22.21293327961373 27.7554858522292 27.58077324590903 22.45080762224804 82-83 22.284985352781053 27.90868498235109 27.673449040487615 22.132880624380245 84-85 22.209089593644755 27.728710053293014 27.603200002253907 22.45900035080832 86-87 22.060558395595752 27.967335085512467 27.645291763413525 22.326814755478257 88-89 22.353543789351278 27.780376487555753 27.567095382008993 22.298984341083976 90-91 22.3839996330399 28.008116453990567 27.53888254122046 22.069001371749074 92-93 22.213861660165986 27.931638391155168 27.570387877943638 22.284112070735212 94-95 22.25478267591596 27.864903199205454 27.599176980997964 22.28113714388062 96-97 22.324559688530783 28.0383294077117 27.62242355586774 22.01468734788978 98-99 22.585433636581094 28.463523745727915 27.771460956921434 21.179581660769557 100-101 23.0058949088706 31.076390155697307 25.192918369324747 20.724796566107347 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3733.0 1 3042.0 2 2698.5 3 3560.5 4 4921.5 5 7248.5 6 9184.5 7 9874.5 8 10143.0 9 10409.5 10 10525.5 11 11609.0 12 14281.0 13 20434.0 14 30856.0 15 44836.0 16 58125.5 17 66294.0 18 70512.5 19 67332.5 20 61341.5 21 56938.5 22 55310.5 23 59991.5 24 70605.5 25 88377.0 26 111574.0 27 136764.0 28 164481.0 29 195654.0 30 226803.5 31 258581.0 32 291926.5 33 325571.0 34 358400.5 35 387305.5 36 418630.0 37 448863.0 38 471358.5 39 490402.0 40 508003.0 41 524456.5 42 535826.0 43 543729.0 44 551956.0 45 560649.5 46 566529.5 47 567188.0 48 564055.5 49 557903.5 50 548620.5 51 534375.5 52 510465.5 53 479353.0 54 449803.5 55 417851.0 56 382367.5 57 345220.0 58 307580.5 59 268272.0 60 224091.0 61 181656.0 62 144412.5 63 112075.0 64 84465.5 65 62970.5 66 47266.5 67 35778.0 68 26902.0 69 19891.5 70 14446.0 71 9812.0 72 6448.0 73 4155.5 74 2634.5 75 1658.0 76 1061.0 77 657.5 78 417.5 79 266.0 80 176.0 81 109.5 82 71.5 83 52.5 84 42.0 85 31.0 86 18.5 87 11.5 88 6.5 89 3.0 90 2.0 91 2.0 92 1.0 93 0.5 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0017946369997912555 4 0.0 5 0.03785448894296535 6 0.0 7 0.0015112732629821099 8 0.0 9 0.0 10-11 3.6328684206300716E-6 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 3.997162741210603E-5 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 5.269520027095189E-4 48-49 1.1464474231186627E-4 50-51 5.350537170836108E-4 52-53 0.0010761251723936988 54-55 0.0026928995469518956 56-57 0.0024236222592707683 58-59 0.006239940077558295 60-61 0.005434227822084813 62-63 0.0062281256624146675 64-65 0.0034638405926025687 66-67 0.0058066836597276865 68-69 0.006368514327782591 70-71 0.0029428075899270885 72-73 0.002429100625493411 74-75 0.0033280019387399405 76-77 0.0018626314009020481 78-79 0.0 80-81 4.538081440063765E-4 82-83 1.4397638787238892E-4 84-85 0.0 86-87 0.0 88-89 0.0 90-91 9.065219084135477E-6 92-93 5.956884073079053E-4 94-95 6.021228071150536E-5 96-97 0.0 98-99 1.4529466144794074E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1469.0 20-21 5222.0 22-23 2845.0 24-25 3137.0 26-27 5242.0 28-29 9854.0 30-31 24303.0 32-33 32272.0 34-35 45479.0 36-37 69050.0 38-39 76549.0 40-41 77709.0 42-43 87819.0 44-45 105746.0 46-47 107483.0 48-49 97643.0 50-51 122632.0 52-53 75564.0 54-55 83424.0 56-57 85748.0 58-59 51448.0 60-61 94657.0 62-63 89717.0 64-65 95276.0 66-67 102052.0 68-69 104513.0 70-71 102566.0 72-73 95989.0 74-75 97851.0 76-77 104461.0 78-79 109038.0 80-81 110048.0 82-83 102986.0 84-85 101735.0 86-87 107278.0 88-89 113499.0 90-91 120799.0 92-93 114795.0 94-95 123422.0 96-97 200250.0 98-99 1200045.0 100-101 9301614.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.81751161026335 #Duplication Level Percentage of deduplicated Percentage of total 1 87.65350510574778 71.71591671669798 2 8.320787200808903 13.615722068174263 3 2.188639604943578 5.372071388644601 4 0.8230578587688343 2.6936218366295033 5 0.3815425489373095 1.5608430963743893 6 0.20656932684208948 1.0140592978336165 7 0.12430739126240851 0.711936499949756 8 0.07866832338243017 0.5149157169361546 9 0.04949070168914565 0.3644285454046578 >10 0.1692568645253209 2.082331110565861 >50 0.0031356266230179596 0.17149849741877915 >100 9.737561582232814E-4 0.11824186627440786 >500 3.285853287891811E-5 0.01410056487148263 >1k 3.283177804507822E-5 0.050312794224545106 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.4531473682520286E-5 0.0 7.265736841260143E-6 7.265736841260143E-6 3 0.0 1.4531473682520286E-5 0.0 1.4531473682520286E-5 7.265736841260143E-6 4 0.0 6.539163157134128E-5 0.0 1.4531473682520286E-5 7.265736841260143E-6 5 0.0 6.539163157134128E-5 0.0 1.4531473682520286E-5 7.265736841260143E-6 6 0.0 7.265736841260143E-5 0.0 1.4531473682520286E-5 7.265736841260143E-6 7 0.0 7.265736841260143E-5 0.0 1.4531473682520286E-5 7.265736841260143E-6 8 0.0 9.445457893638187E-5 0.0 1.4531473682520286E-5 1.4531473682520286E-5 9 0.0 2.03440631555284E-4 0.0 1.4531473682520286E-5 1.4531473682520286E-5 10-11 7.265736841260143E-6 2.03440631555284E-4 0.0 2.179721052378043E-5 1.4531473682520286E-5 12-13 7.265736841260143E-6 2.1070636839654416E-4 0.0 2.179721052378043E-5 1.8164342103150357E-5 14-15 1.4531473682520286E-5 2.760979999678854E-4 0.0 2.179721052378043E-5 3.996155262693079E-5 16-17 1.4531473682520286E-5 2.8336373680914556E-4 0.0 2.179721052378043E-5 4.722728946819093E-5 18-19 2.179721052378043E-5 2.906294736504057E-4 0.0 2.179721052378043E-5 5.449302630945107E-5 20-21 3.996155262693079E-5 2.978952104916659E-4 0.0 3.269581578567064E-5 5.8125894730081145E-5 22-23 5.0860157888821E-5 3.305910262773365E-4 0.0 6.175876315071122E-5 6.902449999197136E-5 24-25 5.8125894730081145E-5 3.6691971048363726E-4 0.0 7.265736841260143E-5 9.445457893638187E-5 26-27 7.992310525386158E-5 3.9234978942804773E-4 0.0 1.0535318419827208E-4 9.445457893638187E-5 28-29 7.992310525386158E-5 3.9961552626930784E-4 0.0 3.56021105221747E-4 9.808744735701193E-5 30-31 7.992310525386158E-5 4.4320994731686874E-4 0.0 0.001271503947220525 1.0535318419827207E-4 32-33 8.718884209512172E-5 4.4320994731686874E-4 0.0 0.0035638439206381 1.5258047366646302E-4 34-35 9.08217105157518E-5 5.55828868356401E-4 0.0 0.006775299604475083 1.5984621050772315E-4 36-37 1.01720315777642E-4 6.684477893959331E-4 0.0 0.011516192893397326 1.6711194734898328E-4 38-39 1.1625178946016228E-4 6.866121314990835E-4 0.0 0.020936220708091105 1.6711194734898328E-4 40-41 1.3441613156331265E-4 7.338394209672745E-4 0.0 0.05299991738857211 1.6711194734898328E-4 42-43 1.3804899998394273E-4 7.447380262291647E-4 0.0 0.062419945203265895 1.7437768419024344E-4 44-45 1.416818684045728E-4 8.06496789379876E-4 0.0 0.07572714222803384 1.8164342103150357E-4 46-47 1.5258047366646302E-4 8.57356947268697E-4 0.0 0.09067276291050597 1.8890915787276373E-4 48-49 1.5984621050772315E-4 8.60989815689327E-4 0.0 0.10448492864574149 2.03440631555284E-4 50-51 1.7437768419024344E-4 9.627101314669689E-4 0.0 0.11838428322307215 2.03440631555284E-4 52-53 1.780105526108735E-4 9.663429998875991E-4 0.0 0.1421759385097785 2.179721052378043E-4 54-55 1.8164342103150357E-4 9.736087367288593E-4 0.0 0.2024234283975076 2.3250357892032458E-4 56-57 1.8164342103150357E-4 9.954059472526396E-4 0.0 0.2694207878107674 2.3250357892032458E-4 58-59 1.8164342103150357E-4 0.0010099374209351598 0.0 0.3348887096189419 2.3613644734095466E-4 60-61 1.8164342103150357E-4 0.0010390003683002004 0.0 0.6675105093434106 2.397693157615847E-4 62-63 1.8527628945213365E-4 0.001057164710403351 0.0 0.6737299800795293 2.4703505260284487E-4 64-65 1.8890915787276373E-4 0.001169783631442883 0.0 0.6794917093946486 2.4703505260284487E-4 66-67 1.8890915787276373E-4 0.0011770493682841433 0.0 0.6846067881308957 2.54300789444105E-4 68-69 1.9617489471402387E-4 0.0011952137103872936 0.0 0.6900306606828964 2.6156652628536514E-4 70-71 1.9617489471402387E-4 0.0012061123156491837 0.0 0.6952183967875561 2.6156652628536514E-4 72-73 2.1070636839654416E-4 0.0012097451840698138 0.0 0.6990147442871146 2.7609799996788546E-4 74-75 2.1070636839654416E-4 0.0012315423945935943 0.0 0.7022261999709516 2.7609799996788546E-4 76-77 2.1070636839654416E-4 0.0012824025524824153 0.0 0.7050126100495748 2.797308683885155E-4 78-79 2.1433923681717424E-4 0.001322364105109346 0.0 0.7074684291019208 2.8336373680914556E-4 80-81 2.179721052378043E-4 0.0013259969735299761 0.0 0.7086200483912606 2.8336373680914556E-4 82-83 2.179721052378043E-4 0.0013296298419506062 0.0 0.7090487268648948 2.8336373680914556E-4 84-85 2.3250357892032458E-4 0.0013441613156331264 0.0 0.7094083808385372 2.8336373680914556E-4 86-87 2.397693157615847E-4 0.0013514270524743867 0.0 0.7095209997595768 2.8699660522977567E-4 88-89 2.397693157615847E-4 0.0014022872103632076 0.0 0.7095645941806243 2.906294736504057E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 20315 0.0 50.092716 1 GTATCAA 35710 0.0 36.138584 1 TCAACGC 41380 0.0 31.112144 4 ATCAACG 41370 0.0 30.984255 3 CAACGCA 42310 0.0 30.428278 5 GTGGTAT 10155 0.0 30.037357 1 TGGTATC 9625 0.0 30.02102 2 TATCAAC 42410 0.0 30.01953 2 AACGCAG 43805 0.0 29.46826 6 ACGCAGA 50985 0.0 25.292812 7 CGCAGAG 52565 0.0 24.589775 8 CGAGACC 10945 0.0 22.207806 88-89 GACCGAG 11525 0.0 21.857317 90-91 AGACCGA 11290 0.0 21.765648 90-91 GAGACCG 11530 0.0 21.63391 88-89 ACCGAGG 11885 0.0 21.453068 92-93 GCAGAGT 60710 0.0 21.240675 9 GAGTACT 34935 0.0 20.836828 12-13 ATCTCCG 11530 0.0 20.271166 74-75 ACGAGAC 12270 0.0 20.225683 86-87 >>END_MODULE