##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139489_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5335658 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.160598186765345 30.0 18.0 32.0 18.0 33.0 2 30.28298046838834 32.0 29.0 33.0 25.0 33.0 3 31.950687244197436 33.0 31.0 33.0 29.0 33.0 4 32.079177488512194 33.0 32.0 33.0 31.0 33.0 5 32.90003800843307 33.0 33.0 34.0 32.0 34.0 6 36.825524424541456 38.0 37.0 38.0 35.0 38.0 7 37.005326615761355 38.0 38.0 38.0 35.0 38.0 8 36.91519752577845 38.0 38.0 38.0 35.0 38.0 9 37.24082371846171 38.0 38.0 38.0 36.0 38.0 10-11 37.4189917157359 38.0 38.0 38.0 37.0 38.0 12-13 37.48181320841778 38.0 38.0 38.0 37.0 38.0 14-15 37.434581639228 38.0 38.0 38.0 37.0 38.0 16-17 37.46805220649449 38.0 38.0 38.0 37.0 38.0 18-19 37.487740499859626 38.0 38.0 38.0 37.0 38.0 20-21 37.5048034036505 38.0 38.0 38.0 37.0 38.0 22-23 37.519167010313595 38.0 38.0 38.0 37.5 38.0 24-25 37.528903757099386 38.0 38.0 38.0 38.0 38.0 26-27 37.502445028573455 38.0 38.0 38.0 37.5 38.0 28-29 37.477539989001144 38.0 38.0 38.0 37.0 38.0 30-31 37.48047142816644 38.0 38.0 38.0 37.0 38.0 32-33 37.46057664420938 38.0 38.0 38.0 37.0 38.0 34-35 37.35883282854482 38.0 38.0 38.0 37.0 38.0 36-37 37.393735000104925 38.0 38.0 38.0 37.0 38.0 38-39 37.37879424871588 38.0 38.0 38.0 37.0 38.0 40-41 37.40815781553172 38.0 38.0 38.0 37.0 38.0 42-43 37.378720235825156 38.0 38.0 38.0 37.0 38.0 44-45 37.34250099405931 38.0 38.0 38.0 37.0 38.0 46-47 37.307389749709486 38.0 38.0 38.0 37.0 38.0 48-49 37.244564870368215 38.0 38.0 38.0 37.0 38.0 50-51 37.21237564937056 38.0 38.0 38.0 37.0 38.0 52-53 37.18748582072719 38.0 38.0 38.0 37.0 38.0 54-55 37.15469452131863 38.0 38.0 38.0 36.5 38.0 56-57 37.10880928253425 38.0 38.0 38.0 36.0 38.0 58-59 37.09534504577641 38.0 38.0 38.0 36.0 38.0 60-61 37.08945467904138 38.0 38.0 38.0 36.0 38.0 62-63 37.09514350879874 38.0 38.0 38.0 36.0 38.0 64-65 37.10070346109116 38.0 38.0 38.0 36.0 38.0 66-67 37.094782381025155 38.0 38.0 38.0 36.0 38.0 68-69 37.085204544816676 38.0 38.0 38.0 36.0 38.0 70-71 37.08279987067691 38.0 38.0 38.0 36.0 38.0 72-73 37.07265159229501 38.0 38.0 38.0 36.0 38.0 74-75 37.0714158745664 38.0 38.0 38.0 36.0 38.0 76-77 37.058730113306694 38.0 38.0 38.0 36.0 38.0 78-79 37.046816256327304 38.0 38.0 38.0 36.0 38.0 80-81 37.03799111152196 38.0 38.0 38.0 36.0 38.0 82-83 36.99009296806365 38.0 38.0 38.0 36.0 38.0 84-85 36.98076392981492 38.0 38.0 38.0 36.0 38.0 86-87 36.96736352584547 38.0 38.0 38.0 36.0 38.0 88-89 36.95348480638721 38.0 38.0 38.0 36.0 38.0 90-91 36.94771881073005 38.0 38.0 38.0 35.5 38.0 92-93 36.92918183851747 38.0 38.0 38.0 35.0 38.0 94-95 36.91141050896033 38.0 38.0 38.0 35.0 38.0 96-97 36.89971355222959 38.0 38.0 38.0 35.0 38.0 98-99 36.9135272777781 38.0 38.0 38.0 35.0 38.0 100 35.491176755754566 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 25.0 21 89.0 22 249.0 23 845.0 24 2030.0 25 4184.0 26 7431.0 27 12677.0 28 20072.0 29 29853.0 30 39721.0 31 51184.0 32 65803.0 33 87506.0 34 131738.0 35 243748.0 36 786487.0 37 3852011.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.051394223542815 18.178957496901038 14.273984576972513 26.495663702583638 2 14.423017988239014 19.706502056101325 43.29029069199679 22.580189263662874 3 18.122683843311844 25.9672311562093 30.286975245786945 25.623109754691914 4 12.546531280678034 18.160140698672965 37.839213082997446 31.45411493765155 5 13.705563587471312 37.014478814046925 35.460499904604085 13.819457693877682 6 30.245641680932323 37.25233139005536 18.471442509995956 14.030584419016362 7 26.932329620826522 32.219044024185955 22.417591232421568 18.43103512256595 8 24.576612668952922 36.5477697408642 20.775432008573265 18.100185581609615 9 25.40713816365292 17.196042175116922 20.996585613245827 36.400234047984334 10-11 24.65107396313632 26.45981995097887 28.354422266194725 20.53468381969009 12-13 25.535707123657474 23.697339672070434 28.567760527380127 22.19919267689196 14-15 22.641078195041736 25.026519690729803 26.133805802395884 26.198596311832578 16-17 22.29167424148999 28.41112567559615 26.712694104457217 22.58450597845664 18-19 22.33298123680341 27.233276570574798 28.573889106085886 21.859853086535907 20-21 23.01445486194084 26.301495152818582 28.552770788527948 22.13127919671263 22-23 22.809450359074695 26.493565838389348 28.46065847526587 22.23632532727008 24-25 22.747518716122457 26.639904222039316 28.585276894016857 22.027300167821373 26-27 22.716612575699855 26.709639490205134 28.614743212883447 21.95900472121156 28-29 22.683396008981035 26.564069577235916 28.581651889716493 22.170882524066556 30-31 22.631735543395624 26.733731920445265 28.725500502144673 21.909032034014437 32-33 22.591349345873134 26.9110048298719 28.51586429180173 21.981781532453237 34-35 22.89408562342094 26.564752121459218 28.648208648768858 21.89295360635099 36-37 22.372606881213134 26.81937819249792 28.5879548090391 22.220060117249847 38-39 22.29150903963345 26.445345211182353 28.873871028382347 22.38927472080185 40-41 22.55078424603713 26.332519782450138 28.82389863126572 22.292797340247013 42-43 22.63960149097887 26.379705697953593 28.62258947578541 22.358103335282127 44-45 22.408756763538474 26.719771020592482 28.49181128212961 22.379660933739434 46-47 22.789029094444462 26.41231511168025 28.03957616879623 22.75907962507905 48-49 22.68505179936869 26.47257638155221 27.99469426785412 22.84767755122498 50-51 22.461062724303073 26.62267979216898 28.184786928542536 22.73147055498541 52-53 22.583054304860063 26.64173652344702 28.32008559934529 22.455123572347624 54-55 22.56668949657658 26.603362069588126 27.983471321540517 22.846477112294778 56-57 22.79604631640858 26.975438619533215 27.60967425072701 22.61884081333119 58-59 22.397768612374456 27.270367964879494 28.101134182429437 22.230729240316613 60-61 22.681497395555876 27.614555222279186 27.482149937599466 22.22179744456547 62-63 22.336835785935484 27.974398868130308 27.490588656134506 22.198176689799702 64-65 22.295674618076212 27.87035144320036 27.461726749780606 22.37224718894282 66-67 22.358053639742838 27.807947590724936 27.32940603833175 22.504592731200475 68-69 22.397079905387887 27.618814101149525 27.60257682330191 22.38152917016068 70-71 22.58563392621829 27.119731420089543 27.702240721173375 22.59239393251879 72-73 22.647770602080687 26.75601311502154 27.753320351868727 22.84289593102905 74-75 22.551000977894688 26.951640288717805 27.875681713052323 22.62167702033518 76-77 22.76860433692821 26.96819301596073 27.53915446013809 22.724048186972976 78-79 22.70592303902882 26.88748193110042 27.4812676397885 22.925327390082256 80-81 22.722844942152854 26.9446663295727 27.562574528272997 22.76991420000145 82-83 22.824854148564537 26.93535249646824 27.58509034809285 22.654703006874374 84-85 22.835354951457518 26.98570562829092 27.46994804283367 22.7089913774179 86-87 22.73989275629638 27.020254302030356 27.552792983746464 22.687059957926802 88-89 22.842345020627327 27.003155843799455 27.461780749657738 22.692718385915484 90-91 22.904789593441528 27.015529225048844 27.433693499429456 22.645987682080168 92-93 22.9337122280678 27.001043017350835 27.445498723564455 22.61974603101691 94-95 22.73545257606797 27.05696388376029 27.51699068087376 22.69059285929798 96-97 22.910274345932567 27.154732523177955 27.508752948993486 22.426240181896 98-99 23.94197767842387 29.077362262187833 27.671494036867845 19.309166022520444 100 30.80539236734266 40.18370298843843 29.010904644218915 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1019.0 1 907.0 2 1113.0 3 1536.0 4 2066.5 5 3094.5 6 3940.0 7 4969.5 8 6278.5 9 6824.5 10 6634.0 11 6568.0 12 7330.0 13 9316.5 14 12961.0 15 17107.0 16 20463.0 17 22432.0 18 22387.0 19 20608.0 20 18329.5 21 16346.5 22 15649.0 23 17404.5 24 21273.0 25 27029.5 26 35021.0 27 44230.0 28 54067.5 29 65088.0 30 75731.0 31 86501.0 32 99384.5 33 113129.5 34 124895.5 35 136610.0 36 150569.0 37 162319.0 38 171872.5 39 180183.0 40 188233.0 41 196125.0 42 203435.0 43 219044.5 44 236934.0 45 242824.0 46 239299.0 47 233700.5 48 229357.0 49 227801.0 50 226931.5 51 223428.0 52 217422.5 53 208850.5 54 196514.5 55 183310.0 56 169480.5 57 154250.5 58 138391.5 59 119374.0 60 99289.0 61 80877.5 62 64533.0 63 49895.5 64 37440.5 65 28217.0 66 21004.5 67 15804.0 68 12118.0 69 9023.5 70 6649.0 71 4774.0 72 3281.5 73 2155.0 74 1423.0 75 918.5 76 586.5 77 355.0 78 217.5 79 146.5 80 101.5 81 60.0 82 35.0 83 26.5 84 24.5 85 19.5 86 12.0 87 7.5 88 5.5 89 3.5 90 2.5 91 2.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.010514167137398986 3 7.684150670826354E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 1.3119468504091964E-4 22-23 9.371524921415078E-6 24-25 2.530529194574733E-4 26-27 2.905756293844699E-4 28-29 0.0026629213240832446 30-31 0.0029846213163156107 32-33 0.002473612759402503 34-35 6.884668597517558E-4 36-37 9.469071975078917E-6 38-39 7.622306336489953E-5 40-41 3.070235277886036E-4 42-43 0.002676262306941973 44-45 2.922237506606692E-4 46-47 8.259141985269623E-4 48-49 0.0010817780540777872 50-51 0.0011214714827324933 52-53 0.0 54-55 0.002949864209612875 56-57 0.05148312948099364 58-59 0.06619839843118382 60-61 0.043830369162798186 62-63 0.00825183287119205 64-65 0.0 66-67 0.0 68-69 2.0705210760519827E-4 70-71 0.0014469738750523698 72-73 0.007741668911115782 74-75 0.012406108061276212 76-77 0.013424511763428544 78-79 0.004091558444560539 80-81 0.007561834358427443 82-83 0.045434162117834596 84-85 0.03819307020827103 86-87 0.008577505726480352 88-89 0.00235386866242206 90-91 0.0027511673955820937 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 48.0 20-21 191.0 22-23 482.0 24-25 494.0 26-27 1287.0 28-29 3375.0 30-31 10589.0 32-33 13498.0 34-35 18462.0 36-37 30420.0 38-39 36790.0 40-41 35474.0 42-43 40016.0 44-45 47032.0 46-47 47822.0 48-49 45731.0 50-51 40232.0 52-53 38299.0 54-55 40284.0 56-57 41209.0 58-59 43715.0 60-61 44666.0 62-63 44871.0 64-65 50996.0 66-67 56642.0 68-69 57931.0 70-71 69583.0 72-73 47500.0 74-75 43919.0 76-77 46217.0 78-79 47939.0 80-81 47304.0 82-83 44126.0 84-85 42883.0 86-87 44603.0 88-89 46216.0 90-91 47580.0 92-93 46115.0 94-95 52980.0 96-97 162099.0 98-99 1229133.0 100-101 2526905.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.42121759980478 #Duplication Level Percentage of deduplicated Percentage of total 1 90.14179542855129 77.00021922139368 2 6.944158867126839 11.863570112729109 3 1.6248637587581563 4.163935221207515 4 0.5868316979240034 2.0051151265131675 5 0.260493192497496 1.1125822839798218 6 0.1390307020130077 0.712570310982405 7 0.0833153142942969 0.49818269142104815 8 0.05277070874833645 0.3606190555910056 9 0.03716336756937235 0.2857086097096395 >10 0.12586338749032844 1.6936441789040555 >50 0.0029210451100226955 0.1587190736313154 >100 7.568266768427359E-4 0.12335844036124831 >500 3.570323992130272E-5 0.021775673576036447 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.748366180890904E-5 0.0 0.0 0.0 3 0.0 3.748366180890904E-5 0.0 0.0 0.0 4 0.0 9.37091545222726E-5 0.0 0.0 0.0 5 0.0 9.37091545222726E-5 0.0 0.0 0.0 6 3.748366180890904E-5 9.37091545222726E-5 0.0 0.0 3.748366180890904E-5 7 3.748366180890904E-5 9.37091545222726E-5 0.0 0.0 3.748366180890904E-5 8 3.748366180890904E-5 9.37091545222726E-5 0.0 0.0 3.748366180890904E-5 9 3.748366180890904E-5 2.2490197085345425E-4 0.0 1.874183090445452E-5 3.748366180890904E-5 10-11 3.748366180890904E-5 2.2490197085345425E-4 0.0 1.874183090445452E-5 3.748366180890904E-5 12-13 3.748366180890904E-5 2.2490197085345425E-4 0.0 1.874183090445452E-5 3.748366180890904E-5 14-15 5.622549271336356E-5 2.6238563266236327E-4 0.0 1.874183090445452E-5 7.496732361781808E-5 16-17 7.496732361781808E-5 2.6238563266236327E-4 0.0 1.874183090445452E-5 7.496732361781808E-5 18-19 7.496732361781808E-5 2.90498379019045E-4 0.0 3.748366180890904E-5 7.496732361781808E-5 20-21 7.496732361781808E-5 3.560947871846359E-4 0.0 7.496732361781808E-5 7.496732361781808E-5 22-23 9.37091545222726E-5 3.654657026368631E-4 0.0 8.433823907004534E-5 8.433823907004534E-5 24-25 9.37091545222726E-5 3.9357844899354493E-4 0.0 1.7804739359231794E-4 1.0308006997449986E-4 26-27 9.37091545222726E-5 4.1232027989799945E-4 0.0 2.811274635668178E-4 1.1245098542672713E-4 28-29 9.37091545222726E-5 4.2169119535022674E-4 0.0 6.372222507514537E-4 1.1245098542672713E-4 30-31 9.37091545222726E-5 4.8728760351581755E-4 0.0 0.0020241177376810883 1.1245098542672713E-4 32-33 9.37091545222726E-5 5.060294344202721E-4 0.0 0.005322679976865084 1.1245098542672713E-4 34-35 1.3119281633118163E-4 5.809967580380902E-4 0.0 0.009605188338532942 1.1245098542672713E-4 36-37 1.3119281633118163E-4 6.559640816559083E-4 0.0 0.016342876548684344 1.1245098542672713E-4 38-39 1.3119281633118163E-4 6.747059125603628E-4 0.0 0.03365095738894809 1.1245098542672713E-4 40-41 1.3119281633118163E-4 7.684150670826354E-4 0.0 0.05179304970446007 1.1245098542672713E-4 42-43 1.3119281633118163E-4 8.058987288915444E-4 0.0 0.06368474141333647 1.1245098542672713E-4 44-45 1.3119281633118163E-4 8.808660525093624E-4 0.0 0.07733816522723158 1.1245098542672713E-4 46-47 1.3119281633118163E-4 9.277206297704987E-4 0.0 0.09229414628898629 1.1245098542672713E-4 48-49 1.3119281633118163E-4 9.652042915794079E-4 0.0 0.10688466164810413 1.3119281633118163E-4 50-51 1.3119281633118163E-4 0.0011057680233628167 0.0 0.12112845313548957 1.3119281633118163E-4 52-53 1.3119281633118163E-4 0.0011057680233628167 0.0 0.15518235988888343 1.3119281633118163E-4 54-55 1.3119281633118163E-4 0.0011151389388150438 0.0 0.1975201559020462 1.3119281633118163E-4 56-57 1.3119281633118163E-4 0.0011432516851717259 0.0 0.2551700277641483 1.3119281633118163E-4 58-59 1.3119281633118163E-4 0.0011619935160761803 0.0 0.2935814102028278 1.3119281633118163E-4 60-61 1.4993464723563616E-4 0.0011713644315284075 0.0 0.3111706185066584 1.3119281633118163E-4 62-63 1.5930556268786342E-4 0.0012088480933373166 0.0 0.3260516322447953 1.4993464723563616E-4 64-65 1.6867647814009068E-4 0.0013119281633118165 0.0 0.3329298841867301 1.4993464723563616E-4 66-67 1.7804739359231794E-4 0.0013212990787640436 0.0 0.3395176377496459 1.4993464723563616E-4 68-69 1.874183090445452E-4 0.001330669994216271 0.0 0.345955456665326 1.4993464723563616E-4 70-71 1.874183090445452E-4 0.0013400409096684983 0.0 0.35128750755764326 1.4993464723563616E-4 72-73 2.0616013994899973E-4 0.0013587827405729526 0.0 0.35562624141202454 1.4993464723563616E-4 74-75 2.0616013994899973E-4 0.00136815365602518 0.0 0.35861556344128503 1.4993464723563616E-4 76-77 2.0616013994899973E-4 0.0014618628105474525 0.0 0.3612769034297176 1.4993464723563616E-4 78-79 2.0616013994899973E-4 0.0015087173878085888 0.0 0.3630854901119974 1.4993464723563616E-4 80-81 2.0616013994899973E-4 0.001518088303260816 0.0 0.3636758577854877 1.4993464723563616E-4 82-83 2.0616013994899973E-4 0.001518088303260816 0.0 0.36429433820533474 1.4993464723563616E-4 84-85 2.0616013994899973E-4 0.001518088303260816 0.0 0.3645473529225449 1.6867647814009068E-4 86-87 2.0616013994899973E-4 0.0015743137959741797 0.0 0.36466917482342387 1.6867647814009068E-4 88 2.0616013994899973E-4 0.001686764781400907 0.0 0.3646785457388761 1.6867647814009068E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7190 0.0 49.125267 1 GTATCAA 13450 0.0 37.19263 1 CTTATAC 7285 0.0 34.623604 1 TCAACGC 16410 0.0 30.12007 4 ATCAACG 16465 0.0 30.019453 3 TATCAAC 16905 0.0 29.516321 2 CAACGCA 16805 0.0 29.412098 5 AACGCAG 17190 0.0 28.876242 6 TATACAC 9335 0.0 28.012703 3 TTATACA 9610 0.0 26.774502 2 ACGCAGA 19660 0.0 25.205376 7 CGCAGAG 20185 0.0 24.549799 8 TACACAT 11905 0.0 22.284807 5 TGGTATC 3460 0.0 21.8577 2 ACACATC 11750 0.0 21.428267 6 GTACATG 16625 0.0 21.423649 1 GCAGAGT 23275 0.0 21.290556 9 TACATGG 17005 0.0 20.920061 2 ACATCTC 12230 0.0 20.656342 8 GTGGTAT 3625 0.0 20.51314 1 >>END_MODULE