##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139488_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6082711 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.451676070094404 28.0 18.0 32.0 18.0 33.0 2 29.91602658748706 32.0 27.0 33.0 25.0 33.0 3 31.786566549027235 33.0 31.0 33.0 29.0 33.0 4 31.934466227312132 33.0 32.0 33.0 31.0 33.0 5 32.85660193292103 33.0 33.0 33.0 32.0 34.0 6 36.71429104555518 38.0 37.0 38.0 34.0 38.0 7 36.87766819761781 38.0 38.0 38.0 35.0 38.0 8 36.8114613697741 38.0 38.0 38.0 34.0 38.0 9 37.19981008468099 38.0 38.0 38.0 36.0 38.0 10-11 37.37334841323219 38.0 38.0 38.0 37.0 38.0 12-13 37.45650911246646 38.0 38.0 38.0 37.0 38.0 14-15 37.40811227099232 38.0 38.0 38.0 37.0 38.0 16-17 37.44794294846491 38.0 38.0 38.0 37.0 38.0 18-19 37.472694001079454 38.0 38.0 38.0 37.0 38.0 20-21 37.48888370126568 38.0 38.0 38.0 37.0 38.0 22-23 37.50535254896861 38.0 38.0 38.0 37.0 38.0 24-25 37.51601777825398 38.0 38.0 38.0 37.0 38.0 26-27 37.49317499085322 38.0 38.0 38.0 37.0 38.0 28-29 37.468607126067866 38.0 38.0 38.0 37.0 38.0 30-31 37.46862180525195 38.0 38.0 38.0 37.0 38.0 32-33 37.45155310673394 38.0 38.0 38.0 37.0 38.0 34-35 37.34855955555948 38.0 38.0 38.0 37.0 38.0 36-37 37.38898930239274 38.0 38.0 38.0 37.0 38.0 38-39 37.36953322997783 38.0 38.0 38.0 37.0 38.0 40-41 37.39028698984953 38.0 38.0 38.0 37.0 38.0 42-43 37.35698092554844 38.0 38.0 38.0 37.0 38.0 44-45 37.31831771118179 38.0 38.0 38.0 37.0 38.0 46-47 37.275097931263936 38.0 38.0 38.0 37.0 38.0 48-49 37.208827404260234 38.0 38.0 38.0 37.0 38.0 50-51 37.16940999622872 38.0 38.0 38.0 37.0 38.0 52-53 37.14197632574589 38.0 38.0 38.0 36.5 38.0 54-55 37.10609707120442 38.0 38.0 38.0 36.0 38.0 56-57 37.05715151086498 38.0 38.0 38.0 36.0 38.0 58-59 37.04120870273777 38.0 38.0 38.0 36.0 38.0 60-61 37.03385709898668 38.0 38.0 38.0 36.0 38.0 62-63 37.03834412906182 38.0 38.0 38.0 36.0 38.0 64-65 37.042604690380514 38.0 38.0 38.0 36.0 38.0 66-67 37.0381962006155 38.0 38.0 38.0 36.0 38.0 68-69 37.02539041154022 38.0 38.0 38.0 36.0 38.0 70-71 37.021295009196706 38.0 38.0 38.0 36.0 38.0 72-73 37.00717923698783 38.0 38.0 38.0 36.0 38.0 74-75 37.00552469234417 38.0 38.0 38.0 36.0 38.0 76-77 36.989772813443935 38.0 38.0 38.0 36.0 38.0 78-79 36.97688987733119 38.0 38.0 38.0 36.0 38.0 80-81 36.968631295608795 38.0 38.0 38.0 36.0 38.0 82-83 36.915218116988065 38.0 38.0 38.0 35.0 38.0 84-85 36.903048568437455 38.0 38.0 38.0 35.0 38.0 86-87 36.89008873843349 38.0 38.0 38.0 35.0 38.0 88-89 36.87250559415939 38.0 38.0 38.0 35.0 38.0 90-91 36.860839262741436 38.0 38.0 38.0 35.0 38.0 92-93 36.83685784236395 38.0 38.0 38.0 35.0 38.0 94-95 36.81913133552786 38.0 38.0 38.0 35.0 38.0 96-97 36.80075146449641 38.0 38.0 38.0 35.0 38.0 98-99 36.81855232470725 38.0 38.0 38.0 35.0 38.0 100 35.34948590242141 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 7.0 20 26.0 21 106.0 22 290.0 23 924.0 24 2241.0 25 4680.0 26 8526.0 27 14534.0 28 23606.0 29 35502.0 30 47319.0 31 60795.0 32 78876.0 33 106161.0 34 160303.0 35 300951.0 36 980749.0 37 4257112.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.95879288034563 17.952554379124702 14.452355208064299 26.636297532465374 2 14.428696759903218 19.976508361168822 43.469084358790724 22.12571052013724 3 18.123912893372307 26.303048337405016 30.460916769965774 25.112121999256903 4 12.48075077050348 18.355795631257184 38.3376589813325 30.825794616906837 5 13.663512864576338 37.20235927697371 35.54906685522295 13.585061003227015 6 29.91309302710584 37.58368595844846 18.76899954641935 13.734221468026345 7 26.8572845232989 32.46282784107284 22.69539026266413 17.984497372964128 8 24.447569513001685 36.69335926036927 21.017536424137198 17.84153480249185 9 25.566330539129673 17.19016405678323 21.218565208835336 36.02494019525175 10-11 24.4994624929575 26.673197197762644 28.622845964570732 20.20449434470913 12-13 25.369050083096173 24.039831910475446 28.88195740353273 21.70916060289565 14-15 22.48198212934989 25.376061759304363 26.48363533957145 25.658320771774296 16-17 22.010276338954785 28.765668794719986 27.113107954660347 22.11094691166488 18-19 22.005155267116915 27.58267654011509 29.071634341989945 21.340533850778048 20-21 22.704787642426336 26.66969222791897 29.05112568305292 21.574394446601776 22-23 22.523641557845405 26.764176960747406 28.94571262374846 21.766468857658733 24-25 22.373230912002125 27.03067148146455 28.987598420600726 21.6084991859326 26-27 22.246295740083625 27.193385845960965 29.007511008831322 21.55280740512409 28-29 22.1046348016582 27.027435809791633 29.10843816629201 21.759491222258156 30-31 22.54157701850562 26.892719694037524 28.99568487024401 21.57001841721284 32-33 22.15890287143112 27.10877230310325 29.023114696843557 21.70921012862207 34-35 22.304233122667043 26.87032746748076 29.102214046300727 21.723225363551467 36-37 22.105687877737175 27.05049322851548 29.04118779406178 21.80263109968557 38-39 22.02888472255754 26.793824493634737 29.317654698409907 21.859636085397817 40-41 22.254098931690038 26.651311008482654 29.283568063610765 21.81102199621654 42-43 22.321093604441685 26.68603347954162 29.096612164707548 21.896260751309143 44-45 22.136057304123135 26.972015828570896 28.997186353260286 21.894740514045687 46-47 22.46328753575817 26.786518215447874 28.516049061057885 22.234145187736072 48-49 22.32673755869195 26.875666560478678 28.479359132397956 22.31823674843142 50-51 22.156892945982776 27.067447464769618 28.587857021619715 22.187802567627887 52-53 22.36080566940434 27.01416252417837 28.659043204958312 21.965988601458978 54-55 22.30590796095324 27.0074079569253 28.421462740626254 22.26522134149521 56-57 22.47508481451994 27.28157706730317 28.14926498841982 22.09407312975707 58-59 22.15521894973225 27.454367478551276 28.52455447112339 21.86585910059308 60-61 22.35125966495547 27.796005478350427 28.077988469915887 21.77474638677822 62-63 22.107281049873492 28.092253715097197 28.069503321493432 21.730961913535882 64-65 22.121309639620872 27.889465067844665 28.11805498580092 21.871170306733543 66-67 22.181774032784574 27.873266028267235 27.977051861305203 21.967908077642992 68-69 22.196146283501264 27.72823045529853 28.191542587208655 21.884080673991548 70-71 22.407573289591348 27.361861081010495 28.286548193695747 21.944017435702413 72-73 22.390440011425603 27.030998620534408 28.303499061951793 22.275062306088195 74-75 22.22460016892751 27.256495952115266 28.384762234674117 22.134141644283105 76-77 22.41346931593182 27.24699315700154 28.08751427575761 22.252023251309033 78-79 22.406841632891968 27.174065334359792 28.021641696742005 22.39745133600623 80-81 22.357309231030587 27.313494181744698 28.04548609182159 22.283710495403124 82-83 22.472683258865423 27.24626272677989 28.025563885757027 22.255490128597664 84-85 22.460474653440528 27.348509285759782 27.936330034332347 22.254686026467343 86-87 22.38186368595196 27.35933167107231 28.04401074117845 22.21479390179728 88-89 22.488211600139742 27.33692901322076 27.946046563694676 22.22881282294482 90-91 22.50811648569152 27.385956407842784 27.91719223962863 22.188734866837066 92-93 22.578918090047676 27.367022955310727 27.876449167382788 22.177609787258802 94-95 22.409866985531746 27.39584763708599 27.93083824226383 22.263447135118426 96-97 22.568943785348306 27.461147141439024 27.93434430626376 22.03556476694891 98-99 23.55387591993201 29.38049663242786 28.241377406955177 18.82425004068495 100 30.105607955452157 40.30504858772247 29.58934345682538 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1485.0 1 1312.0 2 1486.5 3 1956.0 4 2412.5 5 3401.5 6 4347.0 7 5808.5 8 7843.5 9 8957.0 10 8795.5 11 8440.0 12 9080.5 13 11141.0 14 15298.5 15 20176.5 16 24079.0 17 26405.5 18 26323.0 19 24271.0 20 21472.0 21 19265.5 22 19067.0 23 21355.0 24 26102.5 25 33142.5 26 42296.5 27 52880.0 28 64282.0 29 77589.5 30 91108.0 31 105046.5 32 121294.5 33 138728.5 34 154775.0 35 169250.0 36 185916.5 37 199543.5 38 210920.5 39 221029.5 40 229502.5 41 236812.5 42 241339.0 43 255043.0 44 269197.5 45 271695.0 46 266352.0 47 258647.0 48 252982.5 49 248328.5 50 243664.5 51 236544.5 52 227684.5 53 216961.5 54 203217.0 55 189616.0 56 174059.5 57 157042.0 58 140919.5 59 121207.0 60 100852.0 61 82204.5 62 65265.5 63 50543.0 64 37947.5 65 28494.0 66 21341.0 67 16576.5 68 12969.0 69 9605.5 70 7042.5 71 5095.5 72 3622.5 73 2487.5 74 1718.5 75 1180.5 76 747.0 77 468.0 78 287.5 79 178.0 80 115.0 81 67.5 82 47.0 83 31.5 84 21.0 85 14.5 86 9.5 87 6.5 88 4.0 89 2.5 90 2.0 91 2.0 92 1.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.00899270078752714 3 8.384419381423842E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 1.0686176666009879E-4 22-23 0.0 24-25 2.3019425106300415E-4 26-27 3.371066807801997E-4 28-29 0.0019409580305658125 30-31 0.002790408928254965 32-33 0.002424516513060351 34-35 7.440283048207909E-4 36-37 0.0 38-39 6.673837705280991E-5 40-41 2.1823094608822705E-4 42-43 0.00244922585882527 44-45 2.46735875796223E-4 46-47 5.063229872095089E-4 48-49 0.0012378827081030157 50-51 0.0013613312632953416 52-53 0.0 54-55 0.002930129771995183 56-57 0.050999220830372206 58-59 0.0662276306422282 60-61 0.044897878863146896 62-63 0.008543245791285212 64-65 0.0 66-67 0.0 68-69 1.980526706931089E-4 70-71 0.0014509177436549075 72-73 0.007841433263166525 74-75 0.012768984566026827 76-77 0.013651601278617847 78-79 0.004241884185210223 80-81 0.00799025390289688 82-83 0.04493420022411174 84-85 0.03767741580370939 86-87 0.008774905926473965 88-89 0.00243167338433908 90-91 0.0026706271077553525 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 43.0 20-21 247.0 22-23 509.0 24-25 544.0 26-27 1240.0 28-29 3292.0 30-31 10588.0 32-33 13820.0 34-35 19231.0 36-37 30574.0 38-39 36897.0 40-41 35792.0 42-43 41272.0 44-45 49309.0 46-47 51229.0 48-49 47416.0 50-51 42308.0 52-53 39758.0 54-55 42621.0 56-57 43256.0 58-59 46974.0 60-61 47948.0 62-63 47447.0 64-65 53976.0 66-67 59091.0 68-69 60967.0 70-71 71967.0 72-73 50703.0 74-75 48541.0 76-77 50515.0 78-79 52952.0 80-81 52120.0 82-83 48658.0 84-85 48174.0 86-87 49558.0 88-89 51897.0 90-91 52592.0 92-93 51572.0 94-95 59481.0 96-97 184922.0 98-99 1406135.0 100-101 2976575.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.6845749730835 #Duplication Level Percentage of deduplicated Percentage of total 1 90.6102383134806 78.54509996413871 2 6.765104158732456 11.728603572967252 3 1.5101944094837352 3.927316815384732 4 0.5207554159412754 1.8056584758320309 5 0.2399225342826236 1.0398791455377139 6 0.12000313602057308 0.6241452504828302 7 0.07418692518334007 0.4501603454654444 8 0.04214834484353054 0.29228890868643204 9 0.026690564799396035 0.208229423888447 >10 0.08823274196511342 1.1857130554756814 >50 0.0021044942749607145 0.12764267710456187 >100 3.9014070802509014E-4 0.05037265135585786 >500 2.8820284441751947E-5 0.014889713680322363 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.6440038002791847E-5 0.0 2 0.0 0.0 0.0 1.6440038002791847E-5 0.0 3 0.0 0.0 0.0 3.2880076005583694E-5 0.0 4 0.0 0.0 0.0 6.576015201116739E-5 0.0 5 0.0 1.6440038002791847E-5 0.0 6.576015201116739E-5 0.0 6 0.0 3.2880076005583694E-5 0.0 6.576015201116739E-5 0.0 7 0.0 3.2880076005583694E-5 0.0 6.576015201116739E-5 0.0 8 0.0 3.2880076005583694E-5 0.0 6.576015201116739E-5 0.0 9 4.9320114008375544E-5 9.864022801675109E-5 0.0 6.576015201116739E-5 0.0 10-11 5.7540133009771465E-5 9.864022801675109E-5 0.0 9.864022801675109E-5 0.0 12-13 6.576015201116739E-5 9.864022801675109E-5 0.0 9.864022801675109E-5 0.0 14-15 6.576015201116739E-5 1.3152030402233477E-4 0.0 1.1508026601954293E-4 0.0 16-17 6.576015201116739E-5 1.4796034202512663E-4 0.0 1.1508026601954293E-4 0.0 18-19 7.398017101256332E-5 1.5618036102652255E-4 0.0 1.2330028502093886E-4 0.0 20-21 8.220019001395923E-5 1.6440038002791846E-4 0.0 1.726203990293144E-4 0.0 22-23 8.220019001395923E-5 2.13720494036294E-4 0.0 2.466005700418777E-4 0.0 24-25 1.06860247018147E-4 2.466005700418777E-4 0.0 3.041407030516492E-4 0.0 26-27 1.3152030402233477E-4 2.7126062704606546E-4 0.0 3.781208740642125E-4 0.0 28-29 1.3152030402233477E-4 2.794806460474614E-4 0.0 6.41161482108882E-4 0.0 30-31 1.3974032302373072E-4 2.9592068405025326E-4 0.0 0.001841284256312687 0.0 32-33 1.4796034202512663E-4 2.9592068405025326E-4 0.0 0.004512790431766361 0.0 34-35 1.5618036102652255E-4 3.534608170600247E-4 0.0 0.007841898127331711 0.0 36-37 1.6440038002791846E-4 4.110009500697962E-4 0.0 0.01334931085826698 0.0 38-39 1.8084041803071032E-4 4.438810260753799E-4 0.0 0.02730690312263726 0.0 40-41 1.9728045603350217E-4 4.932011400837554E-4 0.0 0.04303179947230766 0.0 42-43 1.9728045603350217E-4 5.014211590851514E-4 0.0 0.05326572312904558 0.0 44-45 2.055004750348981E-4 5.34301235090735E-4 0.0 0.06472442961699151 0.0 46-47 2.13720494036294E-4 5.589612920949228E-4 0.0 0.07725173857511888 8.220019001395923E-6 48-49 2.13720494036294E-4 5.589612920949228E-4 0.0 0.08966396726722674 1.6440038002791847E-5 50-51 2.2194051303768992E-4 6.000613871019024E-4 0.0 0.10264337727043091 1.6440038002791847E-5 52-53 2.3016053203908586E-4 6.082814061032984E-4 0.0 0.1346932313568736 1.6440038002791847E-5 54-55 2.3016053203908586E-4 6.165014251046943E-4 0.0 0.17373010159450286 1.6440038002791847E-5 56-57 2.3016053203908586E-4 6.41161482108882E-4 0.0 0.23219087673243066 1.6440038002791847E-5 58-59 2.3016053203908586E-4 6.41161482108882E-4 0.0 0.27055370541194546 1.6440038002791847E-5 60-61 2.3016053203908586E-4 6.41161482108882E-4 0.0 0.2843386772772864 1.6440038002791847E-5 62-63 2.3016053203908586E-4 6.576015201116738E-4 0.0 0.29429312028797683 1.6440038002791847E-5 64-65 2.3016053203908586E-4 6.904815961172576E-4 0.0 0.3003677143300084 1.6440038002791847E-5 66-67 2.3016053203908586E-4 7.069216341200494E-4 0.0 0.3063765482200289 1.6440038002791847E-5 68-69 2.3016053203908586E-4 7.069216341200494E-4 0.0 0.3123031819200353 1.6440038002791847E-5 70-71 2.3016053203908586E-4 7.069216341200494E-4 0.0 0.3172023132448673 1.6440038002791847E-5 72-73 2.466005700418777E-4 7.069216341200494E-4 0.0 0.3213863029165778 1.6440038002791847E-5 74-75 2.466005700418777E-4 7.069216341200494E-4 0.0 0.3242386495100622 1.6440038002791847E-5 76-77 2.466005700418777E-4 7.315816911242372E-4 0.0 0.3272800565405787 1.6440038002791847E-5 78-79 2.466005700418777E-4 7.562417481284249E-4 0.0 0.32914600085389556 1.6440038002791847E-5 80-81 2.466005700418777E-4 7.562417481284249E-4 0.0 0.32978716233600447 1.6440038002791847E-5 82-83 2.466005700418777E-4 7.562417481284249E-4 0.0 0.3301981632860742 1.6440038002791847E-5 84-85 2.466005700418777E-4 7.562417481284249E-4 0.0 0.33046942391312034 1.6440038002791847E-5 86-87 2.466005700418777E-4 7.562417481284249E-4 0.0 0.3305598441221357 1.6440038002791847E-5 88 2.466005700418777E-4 7.726817861312169E-4 0.0 0.3305598441221357 1.6440038002791847E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8955 0.0 50.607998 1 GTATCAA 16405 0.0 38.76383 1 CTTATAC 7405 0.0 32.786335 1 TCAACGC 19925 0.0 31.783794 4 ATCAACG 20115 0.0 31.44123 3 CAACGCA 20395 0.0 30.988695 5 TATCAAC 20585 0.0 30.913116 2 AACGCAG 20925 0.0 30.264854 6 TATACAC 9520 0.0 27.959936 3 ACGCAGA 23765 0.0 26.558496 7 CGCAGAG 24675 0.0 25.579035 8 TTATACA 9935 0.0 25.294565 2 GTGGTAT 4385 0.0 23.895088 1 TGGTATC 4180 0.0 23.436602 2 GTACATG 21230 0.0 22.85161 1 GCAGAGT 27960 0.0 22.665167 9 TACATGG 21505 0.0 22.519777 2 ACATGGG 21465 0.0 21.864716 3 TACACAT 12355 0.0 20.854786 5 ACACATC 11805 0.0 20.780193 6 >>END_MODULE