##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139487_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5743651 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.644084398582017 28.0 18.0 32.0 18.0 33.0 2 29.99378809750105 32.0 28.0 33.0 25.0 33.0 3 31.796976348319212 33.0 31.0 33.0 29.0 33.0 4 31.92335937542166 33.0 32.0 33.0 31.0 33.0 5 32.84057561993234 33.0 33.0 33.0 32.0 34.0 6 36.68985633005905 38.0 37.0 38.0 34.0 38.0 7 36.86743519061308 38.0 38.0 38.0 35.0 38.0 8 36.802788330976234 38.0 38.0 38.0 34.0 38.0 9 37.19267100316506 38.0 38.0 38.0 36.0 38.0 10-11 37.37004102442854 38.0 38.0 38.0 37.0 38.0 12-13 37.449267112503875 38.0 38.0 38.0 37.0 38.0 14-15 37.39894110906111 38.0 38.0 38.0 37.0 38.0 16-17 37.434094620303355 38.0 38.0 38.0 37.0 38.0 18-19 37.45934902729988 38.0 38.0 38.0 37.0 38.0 20-21 37.47656862739239 38.0 38.0 38.0 37.0 38.0 22-23 37.491212851888996 38.0 38.0 38.0 37.0 38.0 24-25 37.50088236177905 38.0 38.0 38.0 37.0 38.0 26-27 37.475830787011986 38.0 38.0 38.0 37.0 38.0 28-29 37.44459114194085 38.0 38.0 38.0 37.0 38.0 30-31 37.441067532003885 38.0 38.0 38.0 37.0 38.0 32-33 37.427912419503954 38.0 38.0 38.0 37.0 38.0 34-35 37.324074303264474 38.0 38.0 38.0 37.0 38.0 36-37 37.36119835796633 38.0 38.0 38.0 37.0 38.0 38-39 37.33218328113884 38.0 38.0 38.0 37.0 38.0 40-41 37.37310277387786 38.0 38.0 38.0 37.0 38.0 42-43 37.343954001071786 38.0 38.0 38.0 37.0 38.0 44-45 37.30631880181468 38.0 38.0 38.0 37.0 38.0 46-47 37.269552092148274 38.0 38.0 38.0 37.0 38.0 48-49 37.208663055371744 38.0 38.0 38.0 37.0 38.0 50-51 37.17211050523173 38.0 38.0 38.0 37.0 38.0 52-53 37.1410552711503 38.0 38.0 38.0 36.5 38.0 54-55 37.10256620443297 38.0 38.0 38.0 36.0 38.0 56-57 37.04851376489738 38.0 38.0 38.0 36.0 38.0 58-59 37.03203110510682 38.0 38.0 38.0 36.0 38.0 60-61 37.0208645623575 38.0 38.0 38.0 36.0 38.0 62-63 37.023975766032265 38.0 38.0 38.0 36.0 38.0 64-65 37.02828693668502 38.0 38.0 38.0 36.0 38.0 66-67 37.02044761336877 38.0 38.0 38.0 36.0 38.0 68-69 37.01006218251803 38.0 38.0 38.0 36.0 38.0 70-71 37.00643913840794 38.0 38.0 38.0 36.0 38.0 72-73 36.99607885027514 38.0 38.0 38.0 36.0 38.0 74-75 36.99194335504346 38.0 38.0 38.0 36.0 38.0 76-77 36.974753866714636 38.0 38.0 38.0 36.0 38.0 78-79 36.95626723962828 38.0 38.0 38.0 36.0 38.0 80-81 36.93904098744356 38.0 38.0 38.0 35.5 38.0 82-83 36.88351687238101 38.0 38.0 38.0 35.0 38.0 84-85 36.87255388330034 38.0 38.0 38.0 35.0 38.0 86-87 36.855824925505075 38.0 38.0 38.0 35.0 38.0 88-89 36.83237915192225 38.0 38.0 38.0 35.0 38.0 90-91 36.81912166235551 38.0 38.0 38.0 35.0 38.0 92-93 36.79510875543494 38.0 38.0 38.0 35.0 38.0 94-95 36.768757094077316 38.0 38.0 38.0 35.0 38.0 96-97 36.7531811251029 38.0 38.0 38.0 35.0 38.0 98-99 36.767767774071764 38.0 38.0 38.0 35.0 38.0 100 35.26805273673203 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 6.0 20 16.0 21 80.0 22 327.0 23 939.0 24 2264.0 25 4662.0 26 8588.0 27 14720.0 28 22994.0 29 33578.0 30 45473.0 31 58048.0 32 75446.0 33 102474.0 34 156635.0 35 292948.0 36 940752.0 37 3983698.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.286222125961345 18.250830351635223 14.535597653826807 26.927349868576623 2 14.118275538861457 20.048872721802113 43.72938497646124 22.103466762875186 3 17.912320315564546 26.24326403720586 30.647932111001253 25.196483536228342 4 12.29139792790335 18.576981783886243 38.48712256367944 30.644497724530968 5 13.519606257413622 37.26648781410988 35.80463019079676 13.409275737679744 6 29.758214766182693 37.88377810559869 18.74823174318913 13.609775385029488 7 26.512230635183094 32.59160419043566 22.75281001578961 18.143355158591636 8 24.169539548973294 36.99098360955427 21.14761151051831 17.691865330954126 9 25.154609846594088 17.472510081131322 21.318025764448432 36.054854307826155 10-11 24.22165796633535 26.87311607198975 28.791312355155284 20.113913606519613 12-13 25.062299223960512 24.117943447469216 28.97898914819163 21.840768180378646 14-15 22.24087083285527 25.57374220682977 26.497422980609368 25.687963979705593 16-17 21.890275018450808 28.985439749037678 27.12882450552793 21.995460726983588 18-19 21.902279577920037 27.765727757483873 28.96163085117811 21.370361813417983 20-21 22.50387736724849 26.934705274821248 28.890634216799672 21.670783141130595 22-23 22.336498895857503 27.12104093571528 28.747968745184664 21.79449142324255 24-25 22.306967142180042 27.20126777254898 28.864035190056182 21.627729895214788 26-27 22.263956691195947 27.318020426690005 28.846399991362482 21.57162289075157 28-29 21.892902148249078 27.088986796112312 28.936299490191065 22.081811565447545 30-31 22.48342546228731 27.0716679253415 28.915481996910657 21.529424615460528 32-33 22.409515831317663 26.999164209911967 29.072253786712555 21.519066172057812 34-35 21.947953451475556 27.112861335972738 29.338577703045576 21.60060750950613 36-37 22.223143178516285 27.166457634980134 28.953456617054858 21.656942569448724 38-39 21.887808039383355 27.093091602739644 29.21066829373124 21.808432064145762 40-41 22.10225815351401 26.946034051887008 29.19929426085604 21.752413533742942 42-43 22.231823544551876 26.943013997671205 29.067498360690387 21.757664097086536 44-45 21.950221430885943 27.27564348684413 28.972944907612984 21.801190174656945 46-47 22.35800391085494 26.973746799864063 28.43970288864132 22.228546400639676 48-49 22.244483327133537 27.034604062475605 28.487570551414702 22.23334205897616 50-51 21.978795929365205 27.300428476662532 28.621337187619844 22.099438406352423 52-53 22.137030278305467 27.319715206172702 28.739169077373646 21.80408543814819 54-55 22.13313927812553 27.322057868638872 28.416785625102968 22.12801722813263 56-57 22.321516574598203 27.69136302775095 28.008870340408176 21.978250057242676 58-59 21.845764468673845 27.93724417978452 28.47105311234315 21.74593823919849 60-61 22.32547983714711 28.251961644920993 27.965973882903235 21.456584635028662 62-63 21.809608913719455 28.562822124562764 27.935367273748955 21.692201687968822 64-65 21.775736420154235 28.417972965552234 27.99297616883663 21.813314445456903 66-67 21.91452436530162 28.35316165230658 28.04506020745629 21.68725377493551 68-69 21.868357820553115 28.39681589164742 28.136115592594997 21.59871069520447 70-71 22.104590685600463 27.919636429825673 27.995703379705443 21.980069504868418 72-73 22.11956376301743 27.41402166775424 28.175624908654136 22.290789660574198 74-75 22.066636564043332 27.577235681088485 28.493920850058167 21.862206904810016 76-77 22.208434302264187 27.422650783710644 28.135719037693224 22.233195876331948 78-79 22.14255658131608 27.36227736933996 27.880497579631236 22.61466846971273 80-81 22.370099214317953 27.586388742669705 27.987359802418133 22.056152240594212 82-83 22.456578962480506 27.389573750157382 27.97700839566935 22.176838891692764 84-85 22.276784829999695 27.40366605714183 27.84736540924491 22.47218370361356 86-87 22.164611966373492 27.673020693490912 27.920793917712807 22.241573422422785 88-89 22.485104388521197 27.674477286656902 27.835650701499215 22.00476762332268 90-91 22.529671639578936 27.667939717747764 27.81328172445704 21.989106918216258 92-93 22.342300034564218 27.423994424020133 27.824139536610936 22.409566004804713 94-95 22.394566082540265 27.77056253538429 27.84445776528711 21.99041361678833 96-97 22.743732819585087 27.578624627023473 27.92600380612269 21.751638747268753 98-99 23.43565072763057 29.608285480163204 28.289940264495744 18.666123527710486 100 29.755209449575464 40.67721765696672 29.56757289345782 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 986.0 1 919.5 2 1131.0 3 1516.5 4 1961.0 5 2821.5 6 3557.5 7 4515.5 8 5766.0 9 6492.0 10 6567.5 11 6500.0 12 7236.5 13 9149.5 14 12801.5 15 17162.5 16 20666.5 17 22826.0 18 23163.0 19 21978.0 20 20021.0 21 18513.0 22 18797.5 23 21341.0 24 26246.5 25 33286.0 26 42939.0 27 54040.5 28 65393.5 29 78507.0 30 91640.0 31 104455.5 32 118833.0 33 134075.5 34 149342.0 35 164477.5 36 179786.0 37 192698.5 38 202442.5 39 210473.5 40 218337.0 41 225851.5 42 230291.5 43 233992.0 44 239207.5 45 244788.5 46 261088.0 47 272168.5 48 267163.0 49 258214.0 50 244500.5 51 229823.0 52 216043.5 53 202804.5 54 188425.0 55 173753.5 56 157784.5 57 141207.5 58 125534.0 59 106935.5 60 87516.5 61 70257.5 62 55275.5 63 42740.0 64 31682.0 65 23445.5 66 17635.5 67 13440.5 68 10306.0 69 7715.0 70 5725.0 71 4144.0 72 2929.5 73 2072.5 74 1431.5 75 933.5 76 597.0 77 356.0 78 215.0 79 132.5 80 90.0 81 62.0 82 37.5 83 22.0 84 15.0 85 11.0 86 8.0 87 7.0 88 6.0 89 5.0 90 3.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.009924001301611118 3 6.964211439727101E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 1.1316954913860998E-4 22-23 0.0 24-25 2.176563340561555E-4 26-27 2.699217723168056E-4 28-29 0.0023516226283232565 30-31 0.0028418538825085203 32-33 0.0022272100080860825 34-35 6.742665556082515E-4 36-37 0.0 38-39 5.304105120998572E-5 40-41 2.1352558227759018E-4 42-43 0.0025970360117550805 44-45 2.7070268732874107E-4 46-47 6.645805513505916E-4 48-49 0.0011572823923341614 50-51 0.0011853883475769782 52-53 0.0 54-55 0.003091930906151909 56-57 0.05009067093460401 58-59 0.0653442169176311 60-61 0.04331503782696204 62-63 0.007978401120659988 64-65 0.0 66-67 0.0 68-69 1.3024478204337232E-4 70-71 0.0015227370528520712 72-73 0.007626154973966613 74-75 0.012077011004214898 76-77 0.013035127674982421 78-79 0.0040083364915772975 80-81 0.00789896357452431 82-83 0.043678787087844395 84-85 0.03672434186084877 86-87 0.008819449295018758 88-89 0.0023568361652600116 90-91 0.0024061170952134423 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 31.0 20-21 157.0 22-23 385.0 24-25 459.0 26-27 1276.0 28-29 3182.0 30-31 10412.0 32-33 13794.0 34-35 18558.0 36-37 30442.0 38-39 36169.0 40-41 35919.0 42-43 40140.0 44-45 47902.0 46-47 49328.0 48-49 45835.0 50-51 40637.0 52-53 38381.0 54-55 41933.0 56-57 43201.0 58-59 25517.0 60-61 49996.0 62-63 49352.0 64-65 54377.0 66-67 60039.0 68-69 61421.0 70-71 73356.0 72-73 49315.0 74-75 46166.0 76-77 48209.0 78-79 50118.0 80-81 49351.0 82-83 46453.0 84-85 45943.0 86-87 47322.0 88-89 49535.0 90-91 50776.0 92-93 49411.0 94-95 57407.0 96-97 193474.0 98-99 1307064.0 100-101 2780908.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.48221440577768 #Duplication Level Percentage of deduplicated Percentage of total 1 90.44878826634218 78.22211499592593 2 6.86581813647001 11.875423122985529 3 1.536477863789443 3.9863402413790965 4 0.5649238509895058 1.9542346241684816 5 0.23174471703956445 1.0020898153210949 6 0.12303302902780086 0.6384101277224725 7 0.07122819777942299 0.4311980590468038 8 0.0406795269494158 0.28144444572519906 9 0.02743730248969831 0.21355548089672405 >10 0.08738144779769623 1.1504105668974707 >50 0.0017774799415759854 0.10785271991346884 >100 6.79784584101055E-4 0.11655273533075648 >500 3.0396799600033777E-5 0.020373064687011735 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.741052859931775E-5 1.741052859931775E-5 2 0.0 1.741052859931775E-5 0.0 1.741052859931775E-5 1.741052859931775E-5 3 0.0 1.741052859931775E-5 0.0 1.741052859931775E-5 1.741052859931775E-5 4 0.0 1.741052859931775E-5 0.0 1.741052859931775E-5 1.741052859931775E-5 5 0.0 1.741052859931775E-5 0.0 1.741052859931775E-5 1.741052859931775E-5 6 1.044631715959065E-4 1.741052859931775E-5 0.0 1.741052859931775E-5 1.741052859931775E-5 7 1.044631715959065E-4 1.741052859931775E-5 0.0 1.741052859931775E-5 1.741052859931775E-5 8 1.044631715959065E-4 3.48210571986355E-5 0.0 1.741052859931775E-5 1.741052859931775E-5 9 1.2187370019522426E-4 8.705264299658876E-5 0.0 1.741052859931775E-5 3.48210571986355E-5 10-11 1.2187370019522426E-4 8.705264299658876E-5 0.0 3.48210571986355E-5 3.48210571986355E-5 12-13 1.2187370019522426E-4 8.705264299658876E-5 0.0 5.223158579795325E-5 3.48210571986355E-5 14-15 1.2187370019522426E-4 1.044631715959065E-4 0.0 6.9642114397271E-5 3.48210571986355E-5 16-17 1.8281055029283638E-4 1.044631715959065E-4 0.0 8.705264299658876E-5 3.48210571986355E-5 18-19 1.9151581459249525E-4 1.2187370019522425E-4 0.0 8.705264299658876E-5 6.0936850097612123E-5 20-21 2.0022107889215414E-4 1.39284228794542E-4 0.0 8.705264299658876E-5 6.9642114397271E-5 22-23 2.08926343191813E-4 1.39284228794542E-4 0.0 1.0446317159590652E-4 9.575790729624762E-5 24-25 2.2633687179113076E-4 1.39284228794542E-4 0.0 1.39284228794542E-4 1.044631715959065E-4 26-27 2.2633687179113076E-4 1.39284228794542E-4 0.0 1.7410528599317752E-4 1.044631715959065E-4 28-29 2.2633687179113076E-4 1.479894930942009E-4 0.0 4.7878953648123815E-4 1.044631715959065E-4 30-31 2.2633687179113076E-4 1.7410528599317752E-4 0.0 0.0012796738520498548 1.044631715959065E-4 32-33 2.2633687179113076E-4 1.7410528599317752E-4 0.0 0.003551747834260821 1.1316843589556538E-4 34-35 2.2633687179113076E-4 2.2633687179113076E-4 0.0 0.006555064017643133 1.2187370019522426E-4 36-37 2.2633687179113076E-4 2.611579289897663E-4 0.0 0.011595412047145622 1.2187370019522426E-4 38-39 2.4374740039044852E-4 3.4821057198635504E-4 0.0 0.025993919198781405 1.39284228794542E-4 40-41 2.611579289897663E-4 3.743263648853316E-4 0.0 0.04121942645888478 1.39284228794542E-4 42-43 2.78568457589084E-4 4.4396847928260263E-4 0.0 0.05071686980981261 1.479894930942009E-4 44-45 2.872737218887429E-4 5.136105936798737E-4 0.0 0.0611980080266019 1.5669475739385976E-4 46-47 3.133895147877195E-4 5.397263865788502E-4 0.0 0.07226239895146833 1.5669475739385976E-4 48-49 3.133895147877195E-4 5.484316508785091E-4 0.0 0.08368370571262077 1.5669475739385976E-4 50-51 3.133895147877195E-4 6.703053510737334E-4 0.0 0.09466974925879026 1.6540002169351863E-4 52-53 3.133895147877195E-4 6.790106153733923E-4 0.0 0.1286638063489582 1.9151581459249525E-4 54-55 3.133895147877195E-4 6.790106153733923E-4 0.0 0.17161558040347508 2.08926343191813E-4 56-57 3.133895147877195E-4 6.964211439727101E-4 0.0 0.2247176926313942 2.08926343191813E-4 58-59 3.133895147877195E-4 7.05126408272369E-4 0.0 0.434262109588483 2.1763160749147187E-4 60-61 3.133895147877195E-4 7.138316725720278E-4 0.0 0.6220259552678253 2.2633687179113076E-4 62-63 3.4821057198635504E-4 7.138316725720278E-4 0.0 0.628998871971852 2.4374740039044852E-4 64-65 3.4821057198635504E-4 8.182948441679343E-4 0.0 0.6356322833681921 2.4374740039044852E-4 66-67 3.4821057198635504E-4 8.444106370669109E-4 0.0 0.642143821064337 2.4374740039044852E-4 68-69 3.4821057198635504E-4 8.531159013665698E-4 0.0 0.648498664003088 2.4374740039044852E-4 70-71 3.5691583628601393E-4 8.531159013665698E-4 0.0 0.6539481594546743 2.4374740039044852E-4 72-73 4.17852686383626E-4 8.705264299658875E-4 0.0 0.6579525810325175 2.78568457589084E-4 74-75 4.17852686383626E-4 9.227580157638408E-4 0.0 0.6607992024585059 2.78568457589084E-4 76-77 4.17852686383626E-4 9.924001301611118E-4 0.0 0.6640636765708781 2.78568457589084E-4 78-79 4.17852686383626E-4 0.0010185159230600884 0.0 0.6662225821171934 2.78568457589084E-4 80-81 4.265579506832849E-4 0.0010272211873597473 0.0 0.6669799401112637 2.78568457589084E-4 82-83 4.352632149829438E-4 0.0010272211873597473 0.0 0.6676241296694385 2.78568457589084E-4 84-85 4.4396847928260263E-4 0.001062042244558383 0.0 0.6678765823341286 2.78568457589084E-4 86-87 4.7878953648123815E-4 0.0010794527731577005 0.0 0.6679723402414248 2.78568457589084E-4 88 4.8749480078089704E-4 0.0011316843589556538 0.0 0.6679897507700242 2.78568457589084E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7590 0.0 50.6485 1 GTATCAA 13695 0.0 36.661922 1 TCAACGC 15930 0.0 30.876627 4 ATCAACG 16000 0.0 30.715261 3 CTTATAC 10110 0.0 30.46117 1 CAACGCA 16255 0.0 30.233154 5 TATCAAC 16785 0.0 29.735569 2 AACGCAG 16750 0.0 29.415771 6 TATACAC 11965 0.0 27.476986 3 ACGCAGA 19250 0.0 25.595541 7 TTATACA 12545 0.0 25.293543 2 CGCAGAG 19750 0.0 24.947552 8 GTGGTAT 3600 0.0 23.716648 1 GCAGAGT 22555 0.0 21.750849 9 TGGTATC 3565 0.0 21.685608 2 TACACAT 15500 0.0 21.539118 5 ACACATC 14830 0.0 20.851019 6 GAGTACT 13545 0.0 20.430193 12-13 ACATCTC 15210 0.0 20.162533 8 ATACACA 17590 0.0 19.800905 4 >>END_MODULE