##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139486_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4310009 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.806794602981107 28.0 18.0 32.0 18.0 33.0 2 30.164130283718666 32.0 29.0 33.0 25.0 33.0 3 31.89602504310316 33.0 31.0 33.0 29.0 33.0 4 32.00853524899832 33.0 32.0 33.0 31.0 33.0 5 32.89126588830789 33.0 33.0 33.0 32.0 34.0 6 36.77494339338966 38.0 37.0 38.0 34.0 38.0 7 36.93847785468662 38.0 38.0 38.0 35.0 38.0 8 36.85970655745731 38.0 38.0 38.0 35.0 38.0 9 37.22181183380359 38.0 38.0 38.0 36.0 38.0 10-11 37.39818478337284 38.0 38.0 38.0 37.0 38.0 12-13 37.472672562864716 38.0 38.0 38.0 37.0 38.0 14-15 37.4236639645068 38.0 38.0 38.0 37.0 38.0 16-17 37.46350239639871 38.0 38.0 38.0 37.0 38.0 18-19 37.485132049608254 38.0 38.0 38.0 37.0 38.0 20-21 37.499004741022944 38.0 38.0 38.0 37.0 38.0 22-23 37.51439766996579 38.0 38.0 38.0 37.5 38.0 24-25 37.52790322997622 38.0 38.0 38.0 38.0 38.0 26-27 37.50300872622378 38.0 38.0 38.0 37.5 38.0 28-29 37.47729596786696 38.0 38.0 38.0 37.0 38.0 30-31 37.47917262638329 38.0 38.0 38.0 37.0 38.0 32-33 37.46699104504931 38.0 38.0 38.0 37.0 38.0 34-35 37.370233602726856 38.0 38.0 38.0 37.0 38.0 36-37 37.41172245268342 38.0 38.0 38.0 37.0 38.0 38-39 37.41349964570717 38.0 38.0 38.0 37.0 38.0 40-41 37.40677582019349 38.0 38.0 38.0 37.0 38.0 42-43 37.36982309292755 38.0 38.0 38.0 37.0 38.0 44-45 37.33800182330826 38.0 38.0 38.0 37.0 38.0 46-47 37.301523791188416 38.0 38.0 38.0 37.0 38.0 48-49 37.242228856422884 38.0 38.0 38.0 37.0 38.0 50-51 37.20684926970375 38.0 38.0 38.0 37.0 38.0 52-53 37.17992629070102 38.0 38.0 38.0 37.0 38.0 54-55 37.14941567566805 38.0 38.0 38.0 36.5 38.0 56-57 37.10063221063797 38.0 38.0 38.0 36.0 38.0 58-59 37.09184165336224 38.0 38.0 38.0 36.0 38.0 60-61 37.08775956150335 38.0 38.0 38.0 36.0 38.0 62-63 37.09238807415809 38.0 38.0 38.0 36.0 38.0 64-65 37.095734053550835 38.0 38.0 38.0 36.0 38.0 66-67 37.08810059626969 38.0 38.0 38.0 36.0 38.0 68-69 37.07661339013159 38.0 38.0 38.0 36.0 38.0 70-71 37.06933417783051 38.0 38.0 38.0 36.0 38.0 72-73 37.05989636930353 38.0 38.0 38.0 36.0 38.0 74-75 37.0477572067919 38.0 38.0 38.0 36.0 38.0 76-77 37.02760677093303 38.0 38.0 38.0 36.0 38.0 78-79 37.006494533084755 38.0 38.0 38.0 36.0 38.0 80-81 36.989615041997865 38.0 38.0 38.0 36.0 38.0 82-83 36.91015404697663 38.0 38.0 38.0 35.0 38.0 84-85 36.925113611119116 38.0 38.0 38.0 35.0 38.0 86-87 36.91461871682747 38.0 38.0 38.0 35.0 38.0 88-89 36.89285597339769 38.0 38.0 38.0 35.0 38.0 90-91 36.888278055586575 38.0 38.0 38.0 35.0 38.0 92-93 36.86705084395881 38.0 38.0 38.0 35.0 38.0 94-95 36.81357827913058 38.0 38.0 38.0 35.0 38.0 96-97 36.745739371166025 38.0 38.0 38.0 34.5 38.0 98-99 36.7820905900832 38.0 38.0 38.0 34.5 38.0 100 35.3396134110936 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 14.0 21 60.0 22 216.0 23 688.0 24 1534.0 25 3364.0 26 6050.0 27 10196.0 28 16529.0 29 24018.0 30 32050.0 31 40995.0 32 53584.0 33 72212.0 34 109559.0 35 203996.0 36 653757.0 37 3081182.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.20671209735293 18.157317072887782 14.421965244156102 26.214005585603182 2 14.4666466492574 20.095382800466496 43.10246330154525 22.335507248730853 3 18.358149011004002 25.92851423569082 30.11505629844428 25.598280454860895 4 12.53259563959147 17.93478853524436 38.7943041418243 30.738311683339877 5 13.76229144765127 37.25064147197836 35.48115560779571 13.505911472574649 6 30.318915807368384 37.65384248617578 18.673325276118913 13.35391643033692 7 27.1067879440623 32.424271039805255 22.83577598097823 17.63316503515422 8 24.510575267940276 36.78549163122397 20.901510878515566 17.802422222320185 9 25.726117973303538 17.332005571218065 21.36826164400121 35.57361481147719 10-11 24.639670125978856 26.701521968979648 28.610508701953986 20.04829920308751 12-13 25.35212803499946 24.161852098220677 28.868153175550216 21.617866691229647 14-15 22.433688653550377 25.533983803746118 26.72248480223591 25.309842740467598 16-17 21.922877655243873 28.68324636909111 27.355940556040604 22.037935419624414 18-19 21.904304608180635 27.79271458597882 29.165008704158158 21.137972101682386 20-21 22.738216745387593 26.931350263610888 29.06487799977308 21.265554991228438 22-23 22.450091449460903 26.791901864548063 28.969971048255033 21.788035637735998 24-25 22.191021893279327 26.966969510451218 29.051155866991614 21.790852729277844 26-27 22.106814630565616 27.078143105362084 29.050280820584177 21.76476144348812 28-29 22.086821856951023 27.076994542134646 29.097383216991503 21.738800383922833 30-31 22.318440725823503 26.937161254404884 29.002211097030354 21.742186922741258 32-33 22.092197685774085 27.140753264831712 28.941932949867983 21.82511609952622 34-35 22.271790410831475 27.18270598035358 28.911311938659424 21.634191670155516 36-37 22.21106886583723 27.032365264440976 28.933273701217555 21.823292168504235 38-39 22.07327678996301 27.12805918751694 28.989715581613584 21.808948440906466 40-41 22.44525318619512 26.93149068292121 28.949629169404297 21.673626961479375 42-43 22.121538405844735 27.074479587919182 28.751380160179558 22.05260184605653 44-45 22.15995112815743 27.15571948032749 28.729354892398067 21.95497449911701 46-47 22.328599791772596 27.07528873392896 28.58888404639113 22.007227427907313 48-49 22.23294915863714 27.31739080408947 28.4419073285523 22.00775270872109 50-51 22.161785554571768 27.517459052221295 28.156949991668128 22.163805401538802 52-53 22.203393472010287 27.36999621915842 28.01450499745269 22.412105311378603 54-55 22.38784761201029 27.072784213807292 28.361433084205345 22.177935089977073 56-57 22.211773833366667 26.846578521683274 28.487251831694515 22.45439581325554 58-59 22.04131475390761 26.584179925159095 28.562673377508364 22.81183194342493 60-61 22.16984170272015 26.94300408397788 28.869591152465148 22.01756306083683 62-63 21.75932560738329 27.16376862945421 28.847614936245026 22.229290826917474 64-65 21.601680619902112 27.438379507907477 28.4996469999045 22.46029287228591 66-67 21.649544227454125 28.068947508413167 27.977162866549016 22.304345397583692 68-69 21.769013819904348 28.076885459668656 27.9632615005227 22.190839219904294 70-71 21.874825315240436 27.4974952892936 27.925338577339954 22.702340818126014 72-73 22.004621482869172 26.73911516050061 28.02691733513961 23.229346021490606 74-75 22.06624323781 26.929801755732875 28.26394257287072 22.740012433586404 76-77 22.347340468093485 27.016105414921874 27.411627159838904 23.224926957145737 78-79 22.59813109918526 26.919795037055327 26.95080531985394 23.53126854390547 80-81 22.365938093805894 27.349212881716362 27.16890583590021 23.115943188577535 82-83 22.40084621988199 27.11464092807753 27.17430921552304 23.310203636517436 84-85 22.457342790073216 27.54180588003785 27.100635566608887 22.90021576328005 86-87 22.951636536737674 27.47850087760289 27.09650870566006 22.473353879999376 88-89 22.6593680991557 27.627527709400358 27.443218196931817 22.26988599451213 90-91 22.650185197865664 27.26151710915252 27.258266004784016 22.8300316881978 92-93 22.667446404875527 26.795627920018756 27.495836128154753 23.041089546950964 94-95 21.90096756336049 27.24067072313404 28.190467674253473 22.667894039251998 96-97 22.08561045890536 27.136429118480855 28.30856173317432 22.469398689439465 98-99 23.24274994171122 29.02657496441253 28.61968431155706 19.110990782319195 100 29.93439267388726 40.258716120093666 29.80689120601907 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 749.0 1 682.5 2 841.5 3 1129.5 4 1417.5 5 2088.5 6 2712.5 7 3483.0 8 4398.5 9 4846.0 10 4855.5 11 4889.5 12 5401.5 13 6619.5 14 9358.0 15 12624.0 16 15137.5 17 16750.5 18 16862.5 19 15649.0 20 13958.0 21 12633.5 22 12484.0 23 14129.0 24 17377.5 25 21871.0 26 28227.5 27 35528.5 28 43263.5 29 52487.5 30 61765.0 31 70611.5 32 81502.0 33 93505.0 34 104886.5 35 115856.5 36 127891.0 37 138675.0 38 147023.5 39 154209.0 40 161525.0 41 167506.5 42 171138.0 43 174992.5 44 179530.0 45 183782.0 46 185415.5 47 186379.5 48 186630.0 49 184674.5 50 181086.5 51 175360.0 52 167535.5 53 157843.0 54 146077.5 55 134529.0 56 122062.0 57 108865.5 58 96059.0 59 81484.0 60 67066.5 61 53567.0 62 41639.0 63 31700.5 64 23262.0 65 17152.0 66 12774.0 67 9720.5 68 7570.0 69 5831.0 70 4332.5 71 3077.5 72 2198.5 73 1520.5 74 973.0 75 609.5 76 411.0 77 272.0 78 178.0 79 105.0 80 63.5 81 42.0 82 30.5 83 20.0 84 13.5 85 10.0 86 7.5 87 7.5 88 6.5 89 5.5 90 5.0 91 4.5 92 2.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.009907171887576104 3 7.424578463757269E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 6.960631134346213E-5 22-23 1.1601579485437465E-5 24-25 3.3647047575997076E-4 26-27 3.7131628140668534E-4 28-29 0.00257675269964175 30-31 0.003310959380104759 32-33 0.002817065034972931 34-35 8.403515330521346E-4 36-37 1.171707665499021E-5 38-39 3.530967883022329E-5 40-41 4.022135943462964E-4 42-43 0.0028340708665374106 44-45 4.0798366433408004E-4 46-47 8.353238859412447E-4 48-49 0.0011481381596175869 50-51 0.0011823354647803818 52-53 0.0 54-55 0.00347206090662059 56-57 0.05243297147453483 58-59 0.06679968876293162 60-61 0.043498153103038444 62-63 0.00838951356017925 64-65 0.0 66-67 0.0 68-69 1.0322402167498007E-4 70-71 0.0015505576926033709 72-73 0.00849910088459063 74-75 0.01249310456303674 76-77 0.013789757788063885 78-79 0.004250028356080911 80-81 0.0072757619069826664 82-83 0.04426513044743288 84-85 0.037235301856366046 86-87 0.008409741777258763 88-89 0.0020492646057421247 90-91 0.002503000003740115 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 27.0 20-21 151.0 22-23 322.0 24-25 369.0 26-27 933.0 28-29 2425.0 30-31 8150.0 32-33 10547.0 34-35 14382.0 36-37 23995.0 38-39 15258.0 40-41 27448.0 42-43 30477.0 44-45 35970.0 46-47 37045.0 48-49 34648.0 50-51 17761.0 52-53 2860.0 54-55 2495.0 56-57 2213.0 58-59 18450.0 60-61 34595.0 62-63 33331.0 64-65 35263.0 66-67 36550.0 68-69 37325.0 70-71 37882.0 72-73 34568.0 74-75 34630.0 76-77 36352.0 78-79 38160.0 80-81 37446.0 82-83 35404.0 84-85 34372.0 86-87 35539.0 88-89 37197.0 90-91 38364.0 92-93 37309.0 94-95 43841.0 96-97 147625.0 98-99 1063845.0 100-101 2154485.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.94377445829411 #Duplication Level Percentage of deduplicated Percentage of total 1 91.03826138059395 80.06248325930183 2 6.646608422451338 11.690556640333174 3 1.4205190849324183 3.7477743005699686 4 0.45788462190785045 1.6107240766794113 5 0.18334654946016027 0.8062093796715402 6 0.0924943837701587 0.48805831349650425 7 0.05109626633335066 0.3145518965456783 8 0.029648828535753954 0.20859439117607842 9 0.019366095206872203 0.15328147581099177 >10 0.05915092454971341 0.7668426825368412 >50 0.0011070184613412883 0.06808580753060067 >100 5.164237970408925E-4 0.08283777634734381 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 2.3201807699241464E-5 0.0 6 1.6241265389469026E-4 0.0 0.0 2.3201807699241464E-5 0.0 7 1.6241265389469026E-4 0.0 0.0 2.3201807699241464E-5 0.0 8 1.856144615939317E-4 0.0 0.0 2.3201807699241464E-5 0.0 9 2.552198846916561E-4 6.960542309772439E-5 0.0 4.640361539848293E-5 2.3201807699241464E-5 10-11 2.552198846916561E-4 6.960542309772439E-5 0.0 1.2760994234582804E-4 2.3201807699241464E-5 12-13 2.6682078854127684E-4 6.960542309772439E-5 0.0 1.3921084619544877E-4 2.3201807699241464E-5 14-15 2.7842169239089754E-4 1.1600903849620731E-4 0.0 1.3921084619544877E-4 3.48027115488622E-5 16-17 3.712289231878634E-4 1.1600903849620731E-4 0.0 1.3921084619544877E-4 5.800451924810366E-5 18-19 3.712289231878634E-4 1.2760994234582804E-4 0.0 1.6241265389469026E-4 6.960542309772439E-5 20-21 3.712289231878634E-4 1.3921084619544877E-4 0.0 1.6241265389469026E-4 6.960542309772439E-5 22-23 3.828298270374842E-4 1.3921084619544877E-4 0.0 1.9721536544355244E-4 1.0440813464658659E-4 24-25 4.060316347367256E-4 1.508117500450695E-4 0.0 2.3201807699241463E-4 1.3921084619544877E-4 26-27 4.1763253858634634E-4 1.6241265389469026E-4 0.0 3.3642621163900127E-4 1.3921084619544877E-4 28-29 4.1763253858634634E-4 1.6241265389469026E-4 0.0 6.148479040298988E-4 1.3921084619544877E-4 30-31 4.292334424359671E-4 1.6241265389469026E-4 0.0 0.001856144615939317 1.3921084619544877E-4 32-33 4.408343462855878E-4 1.6241265389469026E-4 0.0 0.004698366059096396 1.3921084619544877E-4 34-35 4.408343462855878E-4 2.0881626929317317E-4 0.0 0.008352650771726927 1.3921084619544877E-4 36-37 4.408343462855878E-4 2.552198846916561E-4 0.0 0.016995324139694373 1.3921084619544877E-4 38-39 4.524352501352085E-4 2.7842169239089754E-4 0.0 0.1843267612666238 1.508117500450695E-4 40-41 4.6403615398482926E-4 2.7842169239089754E-4 0.0 0.3575050539337621 1.6241265389469026E-4 42-43 4.6403615398482926E-4 2.7842169239089754E-4 0.0 0.37744700765126016 1.6241265389469026E-4 44-45 4.6403615398482926E-4 2.7842169239089754E-4 0.0 0.4041406874092375 1.6241265389469026E-4 46-47 4.6403615398482926E-4 2.7842169239089754E-4 0.0 0.43395501030276273 1.6241265389469026E-4 48-49 4.6403615398482926E-4 2.7842169239089754E-4 0.0 0.4640709566963781 1.6241265389469026E-4 50-51 4.872379616840707E-4 2.7842169239089754E-4 0.0 0.49223795124325725 1.6241265389469026E-4 52-53 4.988388655336914E-4 2.7842169239089754E-4 0.0 0.995775182836045 1.7401355774431098E-4 54-55 5.220406732329329E-4 2.7842169239089754E-4 0.0 1.680576537079157 1.856144615939317E-4 56-57 5.336415770825537E-4 2.7842169239089754E-4 0.0 2.422941576224087 1.856144615939317E-4 58-59 5.336415770825537E-4 2.9002259624051824E-4 0.0 3.1877891670295817 1.856144615939317E-4 60-61 5.684442886314158E-4 3.248253077893805E-4 0.0 3.3893664723205914 1.856144615939317E-4 62-63 6.264488078795195E-4 3.4802711548862197E-4 0.0 3.396593835418905 1.856144615939317E-4 64-65 6.264488078795195E-4 4.408343462855878E-4 0.0 3.403136745190091 1.856144615939317E-4 66-67 6.49650615578761E-4 4.408343462855878E-4 0.0 3.4087631835571575 1.856144615939317E-4 68-69 6.49650615578761E-4 4.524352501352085E-4 0.0 3.4147840526551105 1.856144615939317E-4 70-71 6.960542309772439E-4 4.6403615398482926E-4 0.0 3.4198884503489437 2.0881626929317317E-4 72-73 7.192560386764853E-4 4.6403615398482926E-4 0.0 3.4237515513308674 2.3201807699241463E-4 74-75 7.192560386764853E-4 4.6403615398482926E-4 0.0 3.4271042125434077 2.3201807699241463E-4 76-77 7.308569425261061E-4 4.872379616840707E-4 0.0 3.4303988692367 2.552198846916561E-4 78-79 7.424578463757269E-4 4.872379616840707E-4 0.0 3.432104202102594 2.7842169239089754E-4 80-81 7.424578463757269E-4 4.872379616840707E-4 0.0 3.432939467179767 2.7842169239089754E-4 82-83 7.424578463757269E-4 4.872379616840707E-4 0.0 3.433426705141451 3.01623500090139E-4 84-85 7.424578463757269E-4 4.872379616840707E-4 0.0 3.433728328641541 3.01623500090139E-4 86-87 7.424578463757269E-4 4.872379616840707E-4 0.0 3.4339603467185333 3.248253077893805E-4 88 7.424578463757269E-4 5.800451924810366E-4 0.0 3.4339603467185333 3.248253077893805E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCTCGT 4175 0.0 62.136063 94 GGTATCA 5990 0.0 44.86229 1 TATCTCG 5270 0.0 43.974724 94 GTATCAA 10425 0.0 35.40704 1 TATGCCG 2560 0.0 30.059294 86-87 TCAACGC 12260 0.0 29.4352 4 ATCAACG 12280 0.0 29.352705 3 TCTCGTA 2515 0.0 29.311079 82-83 GCCGTCT 2730 0.0 29.27179 90-91 CCGTCTT 2725 0.0 28.916782 90-91 CAACGCA 12505 0.0 28.8239 5 ATGCCGT 2750 0.0 28.502327 88-89 TATCAAC 12835 0.0 28.489017 2 TGCCGTC 2755 0.0 28.251642 88-89 CTCGTAT 2700 0.0 27.990208 82-83 AACGCAG 12930 0.0 27.876476 6 TCGTATG 2780 0.0 27.770786 84-85 CGTATGC 2935 0.0 26.578186 84-85 CTATCTC 6735 0.0 25.784369 92-93 ACGCAGA 14400 0.0 25.090853 7 >>END_MODULE