##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139485_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5057879 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.632371592914737 32.0 18.0 33.0 18.0 33.0 2 29.042498644194534 31.0 27.0 33.0 18.0 33.0 3 31.005897135933857 33.0 30.0 33.0 27.0 33.0 4 32.236160453818684 33.0 32.0 33.0 31.0 33.0 5 32.84633202969071 33.0 33.0 33.0 32.0 34.0 6 36.64827094519264 38.0 37.0 38.0 34.0 38.0 7 37.18276712432227 38.0 38.0 38.0 36.0 38.0 8 37.38827045882276 38.0 38.0 38.0 37.0 38.0 9 37.360268602708764 38.0 38.0 38.0 37.0 38.0 10-11 37.411557888197805 38.0 38.0 38.0 37.0 38.0 12-13 37.463417768594304 38.0 38.0 38.0 37.0 38.0 14-15 37.49496775229301 38.0 38.0 38.0 37.0 38.0 16-17 37.52904972617969 38.0 38.0 38.0 37.5 38.0 18-19 37.524051979100335 38.0 38.0 38.0 37.0 38.0 20-21 37.53561011635773 38.0 38.0 38.0 37.5 38.0 22-23 37.54061914232048 38.0 38.0 38.0 38.0 38.0 24-25 37.5512953796011 38.0 38.0 38.0 38.0 38.0 26-27 37.521651070534105 38.0 38.0 38.0 37.5 38.0 28-29 37.49575089950507 38.0 38.0 38.0 37.0 38.0 30-31 37.49681275978474 38.0 38.0 38.0 37.0 38.0 32-33 37.47918765518297 38.0 38.0 38.0 37.0 38.0 34-35 37.375099639158904 38.0 38.0 38.0 37.0 38.0 36-37 37.4143294915879 38.0 38.0 38.0 37.0 38.0 38-39 37.40311867395785 38.0 38.0 38.0 37.0 38.0 40-41 37.43777091176479 38.0 38.0 38.0 37.0 38.0 42-43 37.414653773350935 38.0 38.0 38.0 37.0 38.0 44-45 37.38767488891042 38.0 38.0 38.0 37.0 38.0 46-47 37.3628042733922 38.0 38.0 38.0 37.0 38.0 48-49 37.306275298819486 38.0 38.0 38.0 37.0 38.0 50-51 37.272346009575074 38.0 38.0 38.0 37.0 38.0 52-53 37.24964280283118 38.0 38.0 38.0 37.0 38.0 54-55 37.21694454850775 38.0 38.0 38.0 37.0 38.0 56-57 37.16883000910866 38.0 38.0 38.0 37.0 38.0 58-59 37.152972724341055 38.0 38.0 38.0 36.0 38.0 60-61 37.147879343607144 38.0 38.0 38.0 36.0 38.0 62-63 37.15372238894552 38.0 38.0 38.0 36.0 38.0 64-65 37.15956037446804 38.0 38.0 38.0 36.0 38.0 66-67 37.15318797438087 38.0 38.0 38.0 36.0 38.0 68-69 37.13951082428834 38.0 38.0 38.0 36.0 38.0 70-71 37.135458151572905 38.0 38.0 38.0 36.0 38.0 72-73 37.125897397959164 38.0 38.0 38.0 36.0 38.0 74-75 37.12603478823996 38.0 38.0 38.0 36.0 38.0 76-77 37.115304160144234 38.0 38.0 38.0 36.0 38.0 78-79 37.10516357526812 38.0 38.0 38.0 36.0 38.0 80-81 37.09623212676226 38.0 38.0 38.0 36.0 38.0 82-83 37.04767055352542 38.0 38.0 38.0 36.0 38.0 84-85 37.04317292106519 38.0 38.0 38.0 36.0 38.0 86-87 37.03285283096001 38.0 38.0 38.0 36.0 38.0 88-89 37.01886974512621 38.0 38.0 38.0 36.0 38.0 90-91 37.01006137514942 38.0 38.0 38.0 36.0 38.0 92-93 36.992057044299656 38.0 38.0 38.0 36.0 38.0 94-95 36.97934641947889 38.0 38.0 38.0 36.0 38.0 96-97 36.96462386653188 38.0 38.0 38.0 35.0 38.0 98-99 36.97857769303137 38.0 38.0 38.0 35.0 38.0 100 35.60315010514656 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 12.0 20 24.0 21 84.0 22 230.0 23 727.0 24 1697.0 25 3398.0 26 6472.0 27 10962.0 28 17561.0 29 25368.0 30 34187.0 31 44522.0 32 57275.0 33 77988.0 34 119702.0 35 228150.0 36 760597.0 37 3668919.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.97226900841242 21.385031156340435 14.361968722462517 24.28073111278463 2 14.089465650062483 21.1933696632235 42.32538320388503 22.391781482828986 3 18.457557738131484 26.119688341021735 30.35217037484015 25.07058354600663 4 12.799891021513169 18.408309095571486 38.422666892584814 30.369132990330534 5 13.54743757215228 37.75456075560527 35.35549189689986 13.34250977534259 6 29.806406993919783 38.014313905097374 18.608748845118676 13.570530255864169 7 26.526198036766 32.62907238389847 22.652044463697134 18.192685115638394 8 23.978529340065272 37.59761749935101 21.013828128351825 17.41002503223189 9 25.029859354088934 17.667346332326257 21.2113417501684 36.091452563416404 10-11 24.266970403997405 27.070764247226954 28.661272837883235 20.000992510892413 12-13 25.13275821742671 24.159474752163902 28.855366053636317 21.85240097677307 14-15 22.18848058642763 25.798521475108437 26.18133015835294 25.83166778011099 16-17 22.024637204646453 29.162411754017842 26.82316045915689 21.989790582178813 18-19 22.09940174527702 28.038294312695104 28.52591965920893 21.336384282818944 20-21 22.635669229564698 27.192438396335493 28.465586727551973 21.70630564654784 22-23 22.36668266888536 27.462881838773562 28.336472483565434 21.833963008775648 24-25 22.460171725833057 27.475263260247974 28.475825713910304 21.588739300008672 26-27 22.48523974731966 27.587691404723596 28.452977600169593 21.47409124778715 28-29 22.431344885468565 27.45309452823319 28.437537987322013 21.67802259897623 30-31 22.309711416018065 27.644141997235362 28.59735959547037 21.448786991276204 32-33 22.341830080598633 27.738669336255594 28.432987348390782 21.48651323475499 34-35 22.584533481157095 27.469870744076896 28.544942406733092 21.40065336803292 36-37 22.089873883579372 27.681417478079172 28.47408561499187 21.754623023349577 38-39 22.04504207019221 27.32235954948883 28.746016261143286 21.886582119175674 40-41 22.286892469518477 27.201755923549964 28.695632901220797 21.81571870571076 42-43 22.37467498649609 27.214012317116378 28.57642735150206 21.834885344885475 44-45 22.123401444624786 27.500549742927777 28.51120371464968 21.86484509779775 46-47 22.52049858375494 27.23720138410972 28.0715698843076 22.170730147827737 48-49 22.32928630474065 27.266638185020703 28.10274806060275 22.301327449635895 50-51 22.0953702455818 27.453260704275763 28.333642316866094 22.117726733276346 52-53 22.267858560437258 27.47744688864354 28.469444783626262 21.78524976729293 54-55 22.24054083837101 27.49175689046209 28.148132124069065 22.119570147097832 56-57 22.48348023807816 27.795936216347954 27.738108407318645 21.98247513825524 58-59 22.035702998136383 28.11370249681223 28.23100144948069 21.619593055570693 60-61 22.352539043281425 28.578530898034227 27.54147027615847 21.527459782525877 62-63 22.00171858183612 28.96064398790848 27.535509944847654 21.502127485407748 64-65 21.993440753526166 28.904746478931592 27.514022295704915 21.58779047183733 66-67 22.091735748018763 28.9848644723003 27.331871408761383 21.591528370919562 68-69 22.193185742609494 28.546449525981256 27.57202924785785 21.688335483551406 70-71 22.27160598843144 28.11561634844758 27.696692957159886 21.9160847059611 72-73 22.375203056128054 27.795321072944866 27.812304538403904 22.017171332523173 74-75 22.23957825437212 28.013790841992197 27.719718615576827 22.026912288058856 76-77 22.41460957954276 27.69205479109416 27.74666165773027 22.14667397163281 78-79 22.355365037561235 27.67980324714623 27.758049491235386 22.206782224057147 80-81 22.278587984429947 27.763457052769407 27.74459021749678 22.213364745303863 82-83 22.423021827197196 27.691326723878618 27.80891682723321 22.076734621690978 84-85 22.426920609813823 27.694174260944926 27.774515266108253 22.104389863133 86-87 22.37626509802431 27.677186580378667 27.85256282330283 22.093985498294195 88-89 22.446037342873307 27.677553578476456 27.796598361904852 22.079810716745385 90-91 22.474089707684865 27.712201227365078 27.765029420083987 22.048679644866066 92-93 22.49198926916383 27.699688006217084 27.777715923628783 22.030606800990302 94-95 22.3260959027347 27.7820720496078 27.81952805172347 22.07230399593403 96-97 22.49082659391927 27.855534351324863 27.855305512551066 21.798333542204805 98-99 23.493345262060064 29.765463573939765 28.074313602717282 18.666877561282888 100 29.84090068401466 40.80209761769977 29.35700169828557 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 921.0 1 821.5 2 835.0 3 1006.0 4 1284.0 5 1802.0 6 2277.0 7 2953.0 8 3813.5 9 4387.0 10 4631.0 11 4786.0 12 5322.0 13 6682.0 14 9364.5 15 12512.0 16 14947.5 17 16275.5 18 16230.0 19 15303.0 20 14306.5 21 13906.5 22 14689.0 23 17330.5 24 22028.5 25 28642.0 26 37210.0 27 47076.0 28 57987.5 29 70164.0 30 82256.0 31 93977.0 32 106612.5 33 120669.0 34 133735.0 35 145670.0 36 158319.0 37 169445.5 38 179347.0 39 187818.0 40 195547.0 41 203448.0 42 211283.5 43 225577.5 44 239293.0 45 242412.5 46 236635.0 47 227196.5 48 219498.0 49 213191.0 50 207878.5 51 201277.0 52 191693.0 53 180456.5 54 167280.0 55 153513.0 56 139307.5 57 124739.5 58 109948.0 59 93398.5 60 77153.5 61 62153.5 62 49109.0 63 37993.5 64 28407.0 65 20993.0 66 15577.5 67 12021.0 68 9184.5 69 6760.5 70 5034.5 71 3654.5 72 2596.0 73 1780.5 74 1184.5 75 793.0 76 541.0 77 350.0 78 207.0 79 137.5 80 105.0 81 75.0 82 49.0 83 34.5 84 24.5 85 16.0 86 10.0 87 5.0 88 4.0 89 5.0 90 4.5 91 4.5 92 4.0 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.010261218190470748 3 8.501587325438193E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 1.0874246946041887E-4 22-23 0.0 24-25 1.779600616097733E-4 26-27 3.5595337959936263E-4 28-29 0.002383655364183966 30-31 0.0030888844315670526 32-33 0.002311694156314973 34-35 6.466584570888392E-4 36-37 9.989893225024243E-6 38-39 2.0104024252690696E-5 40-41 1.9228653689619372E-4 42-43 0.0026186866216700902 44-45 3.081221301633181E-4 46-47 5.595932047560863E-4 48-49 0.0010664819770819297 50-51 8.33088591589918E-4 52-53 0.0 54-55 0.003330438386354412 56-57 0.0545247910728773 58-59 0.07121356784548953 60-61 0.04657220136290174 62-63 0.007785920460500595 64-65 0.0 66-67 0.0 68-69 1.2612354580984904E-4 70-71 0.0011388079005379124 72-73 0.007931273920510016 74-75 0.012500495555359516 76-77 0.014440294312676258 78-79 0.004155140303415149 80-81 0.008032499443620451 82-83 0.04788000330206919 84-85 0.040568037803642674 86-87 0.009578190915389986 88-89 0.002074532577076569 90-91 0.0027196907944683044 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 34.0 20-21 146.0 22-23 316.0 24-25 366.0 26-27 1160.0 28-29 3080.0 30-31 10235.0 32-33 12799.0 34-35 17988.0 36-37 29268.0 38-39 33774.0 40-41 32974.0 42-43 37137.0 44-45 42711.0 46-47 43293.0 48-49 41421.0 50-51 37619.0 52-53 35203.0 54-55 38178.0 56-57 38911.0 58-59 40766.0 60-61 41960.0 62-63 42223.0 64-65 47823.0 66-67 53631.0 68-69 55167.0 70-71 65143.0 72-73 44602.0 74-75 40907.0 76-77 42552.0 78-79 44395.0 80-81 43963.0 82-83 40931.0 84-85 40454.0 86-87 41508.0 88-89 43344.0 90-91 44050.0 92-93 42637.0 94-95 49131.0 96-97 150558.0 98-99 1138936.0 100-101 2446585.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.17011410990688 #Duplication Level Percentage of deduplicated Percentage of total 1 91.25646082447125 80.46092564159876 2 6.496426937428924 11.455814087595622 3 1.348176709700088 3.566066830037267 4 0.45099829622668575 1.5905828496672183 5 0.1988753517340142 0.8767431228017949 6 0.0901535955822015 0.4769311685940661 7 0.04861450216921714 0.3000442342559333 8 0.03164412414611315 0.2232052829496685 9 0.018170153075119145 0.14418580230249572 >10 0.05904604715096338 0.7786330047200406 >50 0.001017165743251384 0.05918465553351566 >100 4.1629257217490025E-4 0.06768331994365724 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 1.977113331497254E-5 0.0 0.0 0.0 0.0 6 1.977113331497254E-5 0.0 0.0 0.0 0.0 7 1.977113331497254E-5 0.0 0.0 0.0 0.0 8 1.977113331497254E-5 0.0 0.0 0.0 0.0 9 1.977113331497254E-5 9.88556665748627E-5 0.0 0.0 0.0 10-11 2.965669997245881E-5 9.88556665748627E-5 0.0 0.0 0.0 12-13 3.954226662994508E-5 9.88556665748627E-5 0.0 0.0 0.0 14-15 5.9313399944917624E-5 1.5816906651978032E-4 0.0 0.0 0.0 16-17 5.9313399944917624E-5 1.5816906651978032E-4 0.0 0.0 0.0 18-19 7.908453325989016E-5 1.5816906651978032E-4 0.0 0.0 0.0 20-21 1.0874123323234897E-4 1.8782576649223914E-4 0.0 0.0 0.0 22-23 1.1862679988983525E-4 2.1748246646469794E-4 0.0 0.0 0.0 24-25 1.2851236654732153E-4 2.4713916643715676E-4 0.0 1.977113331497254E-5 0.0 26-27 1.383979332048078E-4 2.5702473309464305E-4 0.0 1.0874123323234897E-4 0.0 28-29 1.383979332048078E-4 2.5702473309464305E-4 0.0 4.4485049958688217E-4 0.0 30-31 1.4828349986229406E-4 3.262236996970469E-4 0.0 0.0017596308650325563 0.0 32-33 1.5816906651978032E-4 3.361092663545332E-4 0.0 0.004853813228825759 0.0 34-35 1.680546331772666E-4 3.855370996419645E-4 0.0 0.009420945024584416 0.0 36-37 1.977113331497254E-4 4.349649329293959E-4 0.0 0.016232100451592457 0.0 38-39 1.977113331497254E-4 4.349649329293959E-4 0.0 0.03318584726918141 0.0 40-41 1.977113331497254E-4 4.74507199559341E-4 0.0 0.05218590638487002 0.0 42-43 1.977113331497254E-4 5.041638995317998E-4 0.0 0.0645033224400979 0.0 44-45 2.0759689980721167E-4 5.535917328192311E-4 0.0 0.07918338892646502 0.0 46-47 2.1748246646469794E-4 5.733628661342036E-4 0.0 0.09443681827896634 0.0 48-49 2.2736803312218423E-4 5.733628661342036E-4 0.0 0.1094431084650305 0.0 50-51 2.372535997796705E-4 6.919896660240389E-4 0.0 0.12462733885092941 0.0 52-53 2.372535997796705E-4 6.919896660240389E-4 0.0 0.158772086085887 0.0 54-55 2.372535997796705E-4 6.919896660240389E-4 0.0 0.1998663866810574 0.0 56-57 2.372535997796705E-4 7.117607993390115E-4 0.0 0.2577958072939269 0.0 58-59 2.372535997796705E-4 7.117607993390115E-4 0.0 0.2964187162247258 0.0 60-61 2.372535997796705E-4 7.513030659689565E-4 0.0 0.31445987537463826 0.0 62-63 2.372535997796705E-4 7.908453325989016E-4 0.0 0.32859623569484364 0.0 64-65 2.372535997796705E-4 8.303875992288467E-4 0.0 0.33494276948894985 0.0 66-67 2.372535997796705E-4 8.303875992288467E-4 0.0 0.3410322785499614 0.0 68-69 2.372535997796705E-4 8.501587325438192E-4 0.0 0.3478236628436544 0.0 70-71 2.372535997796705E-4 8.897009991737643E-4 0.0 0.35371546057151626 0.0 72-73 2.372535997796705E-4 8.897009991737643E-4 0.0 0.3584308758671372 0.0 74-75 2.372535997796705E-4 9.094721324887369E-4 0.0 0.36170299843076514 0.0 76-77 2.372535997796705E-4 9.687855324336545E-4 0.0 0.36480706636121585 0.0 78-79 2.372535997796705E-4 0.0010182133657210858 0.0 0.3666260106261933 0.0 80-81 2.372535997796705E-4 0.0010280989323785722 0.0 0.3672883435922449 0.0 82-83 2.372535997796705E-4 0.0010280989323785722 0.0 0.36791113429166655 0.0 84-85 2.372535997796705E-4 0.0010280989323785722 0.0 0.36819781572473365 0.0 86-87 2.372535997796705E-4 0.0010280989323785722 0.0 0.3683856414912259 0.0 88 2.372535997796705E-4 0.0010478700656935446 0.0 0.36839552705788337 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5890 0.0 47.611137 1 GTATCAA 10600 0.0 36.326527 1 CTTATAC 6700 0.0 35.27973 1 TCAACGC 12400 0.0 30.63853 4 ATCAACG 12550 0.0 30.239182 3 CAACGCA 12730 0.0 29.777742 5 TATCAAC 13105 0.0 29.188822 2 AACGCAG 13265 0.0 28.672546 6 TATACAC 9085 0.0 28.159033 3 TTATACA 9095 0.0 27.01414 2 ACGCAGA 15265 0.0 24.832668 7 CGCAGAG 15705 0.0 24.19088 8 ACATCTC 11255 0.0 21.71338 8 TACACAT 11785 0.0 21.707235 5 ACACATC 11095 0.0 21.644766 6 GTGGTAT 3030 0.0 21.250385 1 TGGTATC 2890 0.0 20.520884 2 GCAGAGT 18470 0.0 20.454796 9 GAGTACT 10405 0.0 19.498024 12-13 CACATCT 12275 0.0 19.460533 7 >>END_MODULE