##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139484_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6309001 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.54093667127331 32.0 18.0 33.0 18.0 33.0 2 28.957972427013406 31.0 27.0 33.0 18.0 33.0 3 31.05021381356573 33.0 30.0 33.0 27.0 33.0 4 32.282519847437015 33.0 32.0 33.0 31.0 33.0 5 32.868718359689595 33.0 33.0 33.0 32.0 34.0 6 36.735370465149714 38.0 37.0 38.0 34.0 38.0 7 37.249876327488295 38.0 38.0 38.0 36.0 38.0 8 37.42559194395436 38.0 38.0 38.0 37.0 38.0 9 37.378911019351555 38.0 38.0 38.0 37.0 38.0 10-11 37.44963743071209 38.0 38.0 38.0 37.0 38.0 12-13 37.49591480489542 38.0 38.0 38.0 37.0 38.0 14-15 37.527087648266345 38.0 38.0 38.0 37.0 38.0 16-17 37.5581615060768 38.0 38.0 38.0 38.0 38.0 18-19 37.554412655823 38.0 38.0 38.0 38.0 38.0 20-21 37.56295372670586 38.0 38.0 38.0 38.0 38.0 22-23 37.56791489272623 38.0 38.0 38.0 38.0 38.0 24-25 37.57781145956753 38.0 38.0 38.0 38.0 38.0 26-27 37.55060497462828 38.0 38.0 38.0 38.0 38.0 28-29 37.52495647501344 38.0 38.0 38.0 38.0 38.0 30-31 37.527409992822015 38.0 38.0 38.0 38.0 38.0 32-33 37.517001918443 38.0 38.0 38.0 38.0 38.0 34-35 37.413830881448774 38.0 38.0 38.0 37.0 38.0 36-37 37.45929566006402 38.0 38.0 38.0 37.0 38.0 38-39 37.463878372318774 38.0 38.0 38.0 37.0 38.0 40-41 37.46029667245044 38.0 38.0 38.0 38.0 38.0 42-43 37.42853764340425 38.0 38.0 38.0 37.0 38.0 44-45 37.39942168490806 38.0 38.0 38.0 37.0 38.0 46-47 37.369698059366954 38.0 38.0 38.0 37.0 38.0 48-49 37.31107421207124 38.0 38.0 38.0 37.0 38.0 50-51 37.27637316917817 38.0 38.0 38.0 37.0 38.0 52-53 37.2532598994962 38.0 38.0 38.0 37.0 38.0 54-55 37.22573897965643 38.0 38.0 38.0 37.0 38.0 56-57 37.18094095927056 38.0 38.0 38.0 37.0 38.0 58-59 37.17382229529004 38.0 38.0 38.0 37.0 38.0 60-61 37.17202424544109 38.0 38.0 38.0 36.5 38.0 62-63 37.178808239988854 38.0 38.0 38.0 36.0 38.0 64-65 37.18487381986086 38.0 38.0 38.0 36.0 38.0 66-67 37.182207340321746 38.0 38.0 38.0 36.0 38.0 68-69 37.174763790922555 38.0 38.0 38.0 36.0 38.0 70-71 37.168792019585055 38.0 38.0 38.0 36.0 38.0 72-73 37.161070342163725 38.0 38.0 38.0 36.0 38.0 74-75 37.15886923607768 38.0 38.0 38.0 36.0 38.0 76-77 37.14596428759411 38.0 38.0 38.0 36.0 38.0 78-79 37.13359434541788 38.0 38.0 38.0 36.0 38.0 80-81 37.12345067837505 38.0 38.0 38.0 36.0 38.0 82-83 37.076360464024255 38.0 38.0 38.0 36.0 38.0 84-85 37.06846058874379 38.0 38.0 38.0 36.0 38.0 86-87 37.0579431945635 38.0 38.0 38.0 36.0 38.0 88-89 37.04288394918905 38.0 38.0 38.0 36.0 38.0 90-91 37.03235840725564 38.0 38.0 38.0 36.0 38.0 92-93 37.01213910426249 38.0 38.0 38.0 36.0 38.0 94-95 36.99703765476523 38.0 38.0 38.0 36.0 38.0 96-97 36.98317139876215 38.0 38.0 38.0 36.0 38.0 98-99 36.99375551405535 38.0 38.0 38.0 35.0 38.0 100 35.617803664541945 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 3.0 20 24.0 21 67.0 22 248.0 23 776.0 24 1993.0 25 4013.0 26 7500.0 27 12859.0 28 20767.0 29 30770.0 30 41446.0 31 53556.0 32 69023.0 33 93032.0 34 140284.0 35 266957.0 36 911683.0 37 4653999.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.67222370070951 21.28321108207147 14.375445494461008 23.66911972275801 2 14.345276422710098 21.536064984913807 41.883686211027864 22.234972381348225 3 18.679929066008302 26.181366702995927 30.312457005619308 24.826247225376463 4 12.996257252138651 17.999410683244463 39.12292928785398 29.881402776762915 5 13.685621542935245 37.841458576405365 35.244232803259976 13.228687077399417 6 30.116590566398706 38.093273404141165 18.71969904585528 13.070436983604852 7 26.702658630106413 32.88910558105792 23.07252764740408 17.33570814143158 8 24.25304735250478 37.4090446332153 21.007161038649382 17.330746975630532 9 25.63420104070359 17.56331945422104 21.611091835300073 35.191387669775295 10-11 24.375697515343557 27.101604517101833 28.841333199978887 19.681364767575722 12-13 25.23925737212595 24.481617612677507 29.11979249963663 21.15933251555991 14-15 22.298078570600953 26.01875479176497 26.750780353339614 24.932386284294456 16-17 21.82925632758657 29.152539363997565 27.438718110838785 21.57948619757708 18-19 21.834360146717366 28.230198410176193 29.205574701921904 20.729866741184537 20-21 22.544370937031292 27.406353338841438 29.159340691999976 20.889935032127298 22-23 22.36763974385353 27.268617428523513 29.007868334195123 21.355874493427837 24-25 22.15893269889336 27.369442206813726 29.063009188689747 21.408615905603167 26-27 22.049324476705774 27.549325071234442 29.036098591878662 21.365251860181125 28-29 22.044482646788055 27.50041431393181 29.120980461034268 21.33412257824586 30-31 22.24725430797513 27.41983244375777 29.01550489296323 21.31740835530387 32-33 22.051235926891888 27.597948323505655 28.93429119377238 21.416524555830073 34-35 22.209846086675242 27.60702210059768 28.906641246066535 21.27649056666055 36-37 22.177860121464228 27.45855724725476 28.907428669861655 21.456153961419353 38-39 22.05165856999691 27.626577409393636 29.017175106180478 21.304588914428972 40-41 22.253071197528214 27.509504857741305 28.879794085925713 21.357629858804764 42-43 22.145760225739885 27.622932064552185 28.713387355689544 21.517920354018383 44-45 22.19086194106584 27.69252497258543 28.623309948274844 21.493303138073887 46-47 22.289627020552217 27.67016185134437 28.392826881667414 21.647384246436 48-49 22.246158817279046 27.750376761077522 28.361452262150323 21.642012159493113 50-51 22.206799762689045 27.92124653468625 28.269604253396935 21.602349449227766 52-53 22.360357096903748 27.8770618947823 28.157036880616772 21.60554412769718 54-55 22.351724838397924 27.81540019383357 28.15312989243399 21.679745075334505 56-57 22.284965880585542 27.902404483613207 28.166423813479785 21.646205822321466 58-59 22.33064812650071 27.844939586541383 28.21803358976301 21.6063786971949 60-61 22.341944701424023 27.89571951904645 28.24125671312873 21.521079066400794 62-63 22.337237313889794 27.98792745157794 28.23254787054642 21.44228736398585 64-65 22.3362576774059 27.94037404152194 28.201978500143944 21.521389780928214 66-67 22.352830400614852 28.132135874194304 28.07132342089745 21.443710304293393 68-69 22.424528180256015 27.930434109937618 28.170777038284356 21.47426067152201 70-71 22.423001208005797 27.76069398754616 28.152587464415735 21.66371734003231 72-73 22.43636863346025 27.758380916451692 28.156704909103603 21.64854554098445 74-75 22.254774362352773 27.97651273200683 28.068451782286534 21.700261123353865 76-77 22.403433881454454 27.677656458960758 28.036098037013513 21.88281162257128 78-79 22.29993023344055 27.709202912768156 28.042591350052522 21.948275503738774 80-81 22.266848369849797 27.84348862404157 28.020528798653892 21.869134207454742 82-83 22.34257318946532 27.726950204733203 28.052996322924333 21.877480282877144 84-85 22.31418370020449 27.764869906756477 28.002679836629103 21.918266556409932 86-87 22.27939879587566 27.82056751787993 28.048704430217832 21.85132925602658 88-89 22.354214946744356 27.82077498537611 27.974645702463025 21.85036436541651 90-91 22.3584298659389 27.82270924197573 27.986745587299534 21.83211530478584 92-93 22.421919718876715 27.789534347483702 27.947114112747727 21.84143182089186 94-95 22.253892482309634 27.828416405233934 28.049982527329654 21.867708585126778 96-97 22.38818495383766 27.877989261099955 28.029370409819204 21.704455375243178 98-99 23.384588668764007 29.82551170177925 28.300380602842313 18.48951902661443 100 29.675971138665364 40.75062411281984 29.573404748514793 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1262.0 1 1115.0 2 1105.0 3 1380.0 4 1805.5 5 2456.5 6 3039.5 7 4020.0 8 5345.0 9 6167.0 10 6407.5 11 6568.5 12 7454.5 13 9518.5 14 13266.0 15 17471.0 16 20581.5 17 22328.0 18 22377.5 19 21140.0 20 19683.5 21 18928.0 22 19922.5 23 23369.0 24 29505.5 25 38124.5 26 48817.5 27 61212.5 28 74546.0 29 90108.0 30 105353.0 31 120073.0 32 137698.5 33 156059.5 34 172304.0 35 187684.5 36 205741.0 37 221534.5 38 234313.0 39 244570.5 40 252986.5 41 260164.0 42 262917.5 43 266874.5 44 272563.5 45 275639.0 46 274986.0 47 271624.5 48 267173.5 49 261182.5 50 253707.5 51 244912.0 52 232458.5 53 217481.5 54 201136.5 55 183819.5 56 166289.5 57 148607.5 58 130621.0 59 110697.0 60 91383.5 61 73679.0 62 58139.5 63 44880.5 64 33361.5 65 24918.5 66 18661.0 67 14345.5 68 11097.0 69 8333.0 70 6167.5 71 4373.5 72 3071.5 73 2092.5 74 1393.0 75 944.5 76 623.0 77 382.0 78 236.0 79 155.5 80 111.0 81 79.0 82 56.5 83 38.5 84 22.0 85 12.0 86 6.0 87 4.5 88 3.5 89 1.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.009240765693332431 3 5.864636889421955E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 5.5477262168580815E-5 22-23 7.925715753556843E-6 24-25 7.133640027012717E-5 26-27 1.0305153020424497E-4 28-29 0.001474856550377135 30-31 0.0020714137756158886 32-33 0.0016143275947830976 34-35 4.3852256485629135E-4 36-37 0.0 38-39 2.4154336548812293E-5 40-41 1.0533258358140507E-4 42-43 0.0020467125026980316 44-45 1.7253465235253463E-4 46-47 4.5576547468802853E-4 48-49 8.274424722710654E-4 50-51 8.425967720286183E-4 52-53 0.0 54-55 0.003017871699416559 56-57 0.04884560996095453 58-59 0.06399326302560496 60-61 0.042328179578046764 62-63 0.007229289191187479 64-65 0.0 66-67 0.0 68-69 8.171525773673251E-5 70-71 0.0011921269369426291 72-73 0.006990900625227262 74-75 0.01146769805541674 76-77 0.012437590285770149 78-79 0.004042064160142006 80-81 0.007119251998785391 82-83 0.042626862126582996 84-85 0.035806188827407284 86-87 0.008679016025991767 88-89 0.002277953245962955 90-91 0.0024859523399305434 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 50.0 20-21 266.0 22-23 455.0 24-25 488.0 26-27 1349.0 28-29 3510.0 30-31 12015.0 32-33 15088.0 34-35 21373.0 36-37 34510.0 38-39 39429.0 40-41 38380.0 42-43 43874.0 44-45 51155.0 46-47 52141.0 48-49 49216.0 50-51 44362.0 52-53 41890.0 54-55 45425.0 56-57 47115.0 58-59 49031.0 60-61 48505.0 62-63 47367.0 64-65 49536.0 66-67 51963.0 68-69 54666.0 70-71 53258.0 72-73 50208.0 74-75 50956.0 76-77 52782.0 78-79 54659.0 80-81 54635.0 82-83 51085.0 84-85 50384.0 86-87 51926.0 88-89 54184.0 90-91 55912.0 92-93 54026.0 94-95 61531.0 96-97 190122.0 98-99 1441719.0 100-101 3138455.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.89941162088174 #Duplication Level Percentage of deduplicated Percentage of total 1 91.20667819472298 80.17013349211254 2 6.437089351202846 11.316327330435472 3 1.4018469870699817 3.696645760378716 4 0.4657199334507185 1.6374603252173745 5 0.20284194331065417 0.8914843734521375 6 0.1055206479662969 0.5565121722055014 7 0.05861404137317334 0.36064978245967694 8 0.03396337816834519 0.23882887661240337 9 0.020901515132676855 0.16535077939325266 >10 0.0657787558085799 0.875010807063116 >50 7.79924062788452E-4 0.04338944643180978 >100 2.653277309339263E-4 0.04820685423791769 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.5850369971410688E-5 0.0 4.7551109914232066E-5 0.0 3 0.0 1.5850369971410688E-5 0.0 4.7551109914232066E-5 0.0 4 0.0 4.7551109914232066E-5 0.0 4.7551109914232066E-5 0.0 5 0.0 4.7551109914232066E-5 0.0 4.7551109914232066E-5 0.0 6 1.426533297426962E-4 4.7551109914232066E-5 0.0 6.340147988564275E-5 0.0 7 1.426533297426962E-4 4.7551109914232066E-5 0.0 9.510221982846413E-5 0.0 8 1.426533297426962E-4 6.340147988564275E-5 0.0 9.510221982846413E-5 0.0 9 1.426533297426962E-4 1.1095258979987481E-4 0.0 1.1095258979987481E-4 0.0 10-11 1.5057851472840154E-4 1.1095258979987481E-4 0.0 1.268029597712855E-4 0.0 12-13 1.5850369971410688E-4 1.1095258979987481E-4 0.0 1.268029597712855E-4 7.925184985705344E-6 14-15 1.5850369971410688E-4 1.426533297426962E-4 0.0 1.3472814475699085E-4 4.755110991423206E-5 16-17 2.2190517959974962E-4 1.426533297426962E-4 0.0 1.5057851472840154E-4 6.340147988564275E-5 18-19 2.2983036458545497E-4 1.5850369971410688E-4 0.0 1.9020443965692824E-4 6.340147988564275E-5 20-21 2.377555495711603E-4 1.9020443965692827E-4 0.0 2.53605919542571E-4 6.340147988564275E-5 22-23 2.377555495711603E-4 1.9812962464263358E-4 0.0 3.3285776939962446E-4 7.925184985705344E-5 24-25 2.377555495711603E-4 2.2190517959974962E-4 0.0 3.6455850934244584E-4 9.510221982846413E-5 26-27 2.377555495711603E-4 2.377555495711603E-4 0.0 4.358851742137939E-4 9.510221982846413E-5 28-29 2.53605919542571E-4 2.4568073455686566E-4 0.0 8.400696084847664E-4 9.510221982846413E-5 30-31 2.53605919542571E-4 2.853066594853924E-4 0.0 0.0020605480962833894 9.510221982846413E-5 32-33 2.53605919542571E-4 2.853066594853924E-4 0.0 0.004660008771594742 1.1095258979987481E-4 34-35 2.6153110452827635E-4 3.5663332435674044E-4 0.0 0.008250117570119262 1.1095258979987481E-4 36-37 2.694562895139817E-4 4.2795998922808855E-4 0.0 0.014257407789283912 1.1095258979987481E-4 38-39 2.853066594853924E-4 4.4381035919949924E-4 0.0 0.028641618538339114 1.1095258979987481E-4 40-41 2.9323184447109773E-4 5.07211839085142E-4 0.0 0.04414328037037876 1.1095258979987481E-4 42-43 3.011570294568031E-4 5.151370240708474E-4 0.0 0.05342367198863972 1.1095258979987481E-4 44-45 3.1700739942821377E-4 5.785385039564901E-4 0.0 0.06546995316691184 1.1887777478558016E-4 46-47 3.3285776939962446E-4 6.340147988564275E-4 0.0 0.07793626914942635 1.268029597712855E-4 48-49 3.3285776939962446E-4 6.498651688278382E-4 0.0 0.08983197181297006 1.426533297426962E-4 50-51 3.3285776939962446E-4 7.608177586277131E-4 0.0 0.10185447743628508 1.5057851472840154E-4 52-53 3.3285776939962446E-4 7.608177586277131E-4 0.0 0.13261212036580752 1.6642888469981223E-4 54-55 3.3285776939962446E-4 7.608177586277131E-4 0.0 0.1718972623399489 1.8227925467122292E-4 56-57 3.3285776939962446E-4 7.608177586277131E-4 0.0 0.22946580607611256 1.9812962464263358E-4 58-59 3.3285776939962446E-4 7.608177586277131E-4 0.0 0.26693608068852737 2.0605480962833893E-4 60-61 3.4870813937103515E-4 7.84593313584829E-4 0.0 0.2804802218290978 2.0605480962833893E-4 62-63 3.883340642995618E-4 7.925184985705343E-4 0.0 0.2905689823159007 2.0605480962833893E-4 64-65 3.9625924928526717E-4 9.827229382274626E-4 0.0 0.2962751155056086 2.0605480962833893E-4 66-67 3.9625924928526717E-4 9.90648123213168E-4 0.0 0.30188614647548795 2.0605480962833893E-4 68-69 3.9625924928526717E-4 0.0010461244181131054 0.0 0.3075843544802101 2.0605480962833893E-4 70-71 4.1210961925667786E-4 0.0010936755280273375 0.0 0.31250589435633314 2.0605480962833893E-4 72-73 4.2795998922808855E-4 0.0011095258979987482 0.0 0.31662699054889987 2.853066594853924E-4 74-75 4.2795998922808855E-4 0.0011491518229272749 0.0 0.31968611195338215 2.853066594853924E-4 76-77 4.358851742137939E-4 0.0012284036727843283 0.0 0.32307809112726404 2.853066594853924E-4 78-79 4.4381035919949924E-4 0.001268029597712855 0.0 0.32532091847821865 2.853066594853924E-4 80-81 4.4381035919949924E-4 0.001268029597712855 0.0 0.3260421103119179 2.853066594853924E-4 82-83 4.517355441852046E-4 0.001291805152669971 0.0 0.32647007030114594 2.853066594853924E-4 84-85 4.5966072917090993E-4 0.0013155807076270871 0.0 0.32662857400086004 3.090822144425084E-4 86-87 4.755110991423206E-4 0.0013155807076270871 0.0 0.32676330214561705 3.1700739942821377E-4 88 4.755110991423206E-4 0.0013631318175413192 0.0 0.32677122733060276 3.3285776939962446E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8415 0.0 43.956997 1 GTATCAA 14435 0.0 35.19021 1 TCAACGC 16760 0.0 29.491821 4 ATCAACG 16865 0.0 29.282944 3 CAACGCA 17140 0.0 28.81312 5 AACGCAG 17805 0.0 27.78484 6 TATCAAC 18020 0.0 27.645353 2 ACGCAGA 20550 0.0 24.031963 7 CGCAGAG 21235 0.0 23.25674 8 GCAGAGT 24690 0.0 19.985044 9 GAGTACT 13580 0.0 19.218697 12-13 GTGGTAT 4745 0.0 18.860165 1 GTACATG 19065 0.0 18.731373 1 TGGTATC 4455 0.0 18.653027 2 TACATGG 19365 0.0 18.023071 2 AGAGTAC 21845 0.0 17.945412 10-11 CAGAGTA 23935 0.0 17.749224 10-11 ACATGGG 18980 0.0 17.623457 3 GTACTTT 15265 0.0 17.125326 14-15 TATACCG 425 1.8189894E-12 17.04424 5 >>END_MODULE