##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139483_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4659358 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.957390910936656 32.0 18.0 33.0 18.0 33.0 2 29.235836997285894 31.0 27.0 33.0 18.0 33.0 3 31.10635842963773 33.0 30.0 33.0 28.0 33.0 4 32.266541656597326 33.0 32.0 33.0 31.0 33.0 5 32.84940371613428 33.0 33.0 33.0 32.0 34.0 6 36.663749383498754 38.0 37.0 38.0 34.0 38.0 7 37.19725957953864 38.0 38.0 38.0 36.0 38.0 8 37.40684510612836 38.0 38.0 38.0 37.0 38.0 9 37.386981854581684 38.0 38.0 38.0 37.0 38.0 10-11 37.443888406943614 38.0 38.0 38.0 37.0 38.0 12-13 37.49249156214225 38.0 38.0 38.0 37.0 38.0 14-15 37.52085416059465 38.0 38.0 38.0 37.0 38.0 16-17 37.55121810773072 38.0 38.0 38.0 38.0 38.0 18-19 37.547941905301116 38.0 38.0 38.0 38.0 38.0 20-21 37.55522419870039 38.0 38.0 38.0 38.0 38.0 22-23 37.56115977872079 38.0 38.0 38.0 38.0 38.0 24-25 37.57183403105886 38.0 38.0 38.0 38.0 38.0 26-27 37.54463736627588 38.0 38.0 38.0 38.0 38.0 28-29 37.519637693014204 38.0 38.0 38.0 38.0 38.0 30-31 37.52341201079567 38.0 38.0 38.0 38.0 38.0 32-33 37.514566569790716 38.0 38.0 38.0 38.0 38.0 34-35 37.40947784380411 38.0 38.0 38.0 37.0 38.0 36-37 37.45634219992134 38.0 38.0 38.0 37.0 38.0 38-39 37.46132443272752 38.0 38.0 38.0 37.0 38.0 40-41 37.464688757700415 38.0 38.0 38.0 38.0 38.0 42-43 37.438391970201 38.0 38.0 38.0 37.0 38.0 44-45 37.41050481519045 38.0 38.0 38.0 37.0 38.0 46-47 37.38797569273417 38.0 38.0 38.0 37.0 38.0 48-49 37.33210344221372 38.0 38.0 38.0 37.0 38.0 50-51 37.3028209993932 38.0 38.0 38.0 37.0 38.0 52-53 37.2807931912718 38.0 38.0 38.0 37.0 38.0 54-55 37.25479538795905 38.0 38.0 38.0 37.0 38.0 56-57 37.20947047813169 38.0 38.0 38.0 37.0 38.0 58-59 37.205015053980645 38.0 38.0 38.0 37.0 38.0 60-61 37.20445764677963 38.0 38.0 38.0 37.0 38.0 62-63 37.210355108949216 38.0 38.0 38.0 37.0 38.0 64-65 37.21909084789098 38.0 38.0 38.0 37.0 38.0 66-67 37.21627391313995 38.0 38.0 38.0 37.0 38.0 68-69 37.20713596657497 38.0 38.0 38.0 36.0 38.0 70-71 37.203580106673876 38.0 38.0 38.0 36.0 38.0 72-73 37.1912558567557 38.0 38.0 38.0 36.0 38.0 74-75 37.19135818218791 38.0 38.0 38.0 36.0 38.0 76-77 37.1754963074703 38.0 38.0 38.0 36.0 38.0 78-79 37.16550134569353 38.0 38.0 38.0 36.0 38.0 80-81 37.150398920677645 38.0 38.0 38.0 36.0 38.0 82-83 37.10347979451359 38.0 38.0 38.0 36.0 38.0 84-85 37.09373466101644 38.0 38.0 38.0 36.0 38.0 86-87 37.086482402577985 38.0 38.0 38.0 36.0 38.0 88-89 37.067608529441436 38.0 38.0 38.0 36.0 38.0 90-91 37.05804678599291 38.0 38.0 38.0 36.0 38.0 92-93 37.03992963028344 38.0 38.0 38.0 36.0 38.0 94-95 37.0215199703823 38.0 38.0 38.0 36.0 38.0 96-97 37.00455682617969 38.0 38.0 38.0 36.0 38.0 98-99 37.01207432106246 38.0 38.0 38.0 36.0 38.0 100 35.64148294353583 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 5.0 20 12.0 21 56.0 22 180.0 23 565.0 24 1345.0 25 2961.0 26 5395.0 27 9122.0 28 14732.0 29 21860.0 30 29754.0 31 38614.0 32 50406.0 33 67896.0 34 103864.0 35 195724.0 36 659339.0 37 3457526.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.49731744158744 21.54303232333725 14.38206722900451 23.577583006070792 2 14.271792915758263 21.861549032061557 41.89115310124733 21.975504950932844 3 18.503045727332392 26.572216424993034 30.384451444998128 24.540286402676443 4 12.899244917432831 18.3640321263144 39.20089420044564 29.53582875580713 5 13.482909018796152 38.26748234413411 35.24859004180404 13.001018595265702 6 29.778694833064982 38.640967274890656 18.69098704156238 12.889350850481977 7 26.465362824663828 33.25249959329161 23.122284228857282 17.159853353187284 8 24.017386086237632 37.9127982868026 21.007422052566042 17.062393574393724 9 25.403800266045234 17.87937308101245 21.725525276229043 34.991301376713274 10-11 24.152522729526257 27.573530516435955 28.846055615387357 19.427891138650434 12-13 24.90125249014993 24.9471815644988 29.119505305237332 21.03206064011394 14-15 22.09699276166373 26.528933814486887 26.599351241093732 24.774722182755653 16-17 21.672567336530054 29.72894548991513 27.30262409542259 21.295863078132225 18-19 21.698064411448957 28.746481811442692 29.02571555995483 20.529738217153522 20-21 22.430497159877458 27.93432111992644 28.94406377258759 20.691117947608507 22-23 22.250349715639732 27.789308869604223 28.822503282524625 21.137838132231415 24-25 22.025890046826945 27.936761728630376 28.855678303858284 21.18166992068439 26-27 21.92119437408726 28.11011484052479 28.828412838559732 21.140277946828217 28-29 21.885221901939317 28.03484695190635 28.89025892236989 21.18967222378445 30-31 22.10689998470594 27.970532229997268 28.808577827785896 21.113989957510892 32-33 21.9415250988561 28.16853043893283 28.715162050114667 21.174782412096405 34-35 22.029281373868955 28.181699254759447 28.708553981409334 21.080465389962267 36-37 22.068030065933343 28.006153894229318 28.730188043372824 21.195627996464516 38-39 21.82876447416898 28.161255034742812 28.884185464168183 21.125795026920027 40-41 22.060799308369692 28.111388186854956 28.7321096780201 21.09570282675525 42-43 22.02577323696304 28.144138295677063 28.549277887056878 21.280810580303015 44-45 21.968427783264957 28.298554986595605 28.476390940379464 21.25662628975997 46-47 22.146682674410954 28.265498714242838 28.19644503692327 21.391373574422943 48-49 22.05623705769344 28.31910262278464 28.199670159483553 21.424990160038366 50-51 21.984538509383665 28.465654137032026 28.155761391187777 21.39404596239653 52-53 22.19097126084315 28.430117993605812 28.049218241061176 21.329692504489863 54-55 22.1731154676023 28.36481964599557 28.030479668859748 21.431585217542377 56-57 22.12747078251211 28.473858742681152 28.028022260428003 21.370648214378736 58-59 22.032378584453358 28.41779243470143 28.001474693061446 21.54835428778377 60-61 22.29742024987819 28.51760420872582 28.05618073729019 21.128794804105794 62-63 21.977221663595557 28.671620535864633 28.089087856204685 21.262069944335124 64-65 22.031309785281756 28.649231405120148 27.96823514121295 21.351223668385146 66-67 22.0869244511318 28.98688205613294 27.94101213771268 20.98518135502258 68-69 22.04867079223885 28.950947564894452 27.87003048810303 21.130351154763673 70-71 22.108409054676788 28.705419676896128 27.659965848124514 21.52620542030257 72-73 22.14553560790062 28.700805498263705 27.582971431260194 21.570687462575485 74-75 21.956746354564814 28.935143548591498 27.790170815261163 21.31793928158253 76-77 22.107103892288382 28.048390402984 28.017190858598035 21.82731484612958 78-79 22.039886367046964 28.07413806377695 27.736423224028385 22.149552345147697 80-81 22.29336922461088 28.438910237975485 27.66288630118925 21.604834236224384 82-83 22.344036702146973 28.04069822085798 27.784048066098897 21.83121701089615 84-85 22.116364150567122 28.0011728059071 27.77737898658883 22.105084056936946 86-87 22.050908033827792 28.29094769520082 27.844879963261963 21.813264307709424 88-89 22.348611492749903 28.28957971906268 27.78409770087923 21.577711087308188 90-91 22.433440661603452 28.26059843416052 27.75980602786815 21.546154876367876 92-93 22.190879610628762 27.97258905078336 27.769610344981917 22.066920993605965 94-95 22.316255742342946 28.266087490801535 27.82917646050197 21.58848030635355 96-97 22.725503574230455 28.065181090373382 27.92173842575851 21.287576909637657 98-99 23.250518825410165 30.177180887301002 28.282849458823243 18.289450828465583 100 29.37692823490279 40.97471669356443 29.648355071532784 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 924.0 1 798.0 2 723.5 3 845.0 4 1098.0 5 1574.5 6 1974.0 7 2433.5 8 3048.0 9 3508.0 10 3771.5 11 4126.0 12 4941.5 13 6249.0 14 8670.5 15 11707.0 16 14012.0 17 15270.0 18 15429.0 19 14775.5 20 13964.5 21 13720.5 22 14824.0 23 17880.5 24 23199.0 25 30804.5 26 40530.5 27 51492.0 28 62705.5 29 74823.0 30 86614.5 31 97353.0 32 110599.5 33 124973.5 34 137196.0 35 148905.0 36 161381.5 37 171651.5 38 179560.0 39 185989.5 40 191777.0 41 196229.0 42 197722.5 43 199622.0 44 202342.0 45 203290.5 46 202971.5 47 200308.0 48 195196.0 49 189577.0 50 183657.5 51 176922.0 52 167156.5 53 155940.5 54 143676.0 55 131245.5 56 118026.5 57 104436.5 58 91726.5 59 77855.0 60 64240.5 61 51541.5 62 40314.0 63 30686.5 64 22597.5 65 16669.5 66 12390.5 67 9441.5 68 7125.5 69 5214.5 70 3795.5 71 2694.5 72 1936.0 73 1337.5 74 884.5 75 581.0 76 370.5 77 229.0 78 153.0 79 107.0 80 74.0 81 46.5 82 30.5 83 23.5 84 12.5 85 5.5 86 3.5 87 3.5 88 5.0 89 6.5 90 6.0 91 2.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.011568117324318072 3 9.443361081075976E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 7.511842688278167E-5 22-23 0.0 24-25 1.073223691370058E-4 26-27 2.039334468562854E-4 28-29 0.0017286173788105008 30-31 0.0023751978615051145 32-33 0.001971105107079477 34-35 4.53708107753083E-4 36-37 0.0 38-39 0.0 40-41 1.978846787457673E-4 42-43 0.001870895998662697 44-45 2.567457432392985E-4 46-47 4.957328666834615E-4 48-49 9.095202439879007E-4 50-51 0.0010322387664609108 52-53 0.0 54-55 0.002889691503293258 56-57 0.05151245407305671 58-59 0.0686423757078893 60-61 0.044625882773622574 62-63 0.007516839223227875 64-65 0.0 66-67 0.0 68-69 1.1141037864426444E-4 70-71 0.0014265199570141986 72-73 0.0072219197279195495 74-75 0.011802581137635978 76-77 0.013074475075313752 78-79 0.0038624316669289465 80-81 0.0077069856830863735 82-83 0.04531777689882286 84-85 0.03892545249826953 86-87 0.009120956563387171 88-89 0.002371351100727412 90-91 0.0029435353198430133 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 24.0 20-21 133.0 22-23 280.0 24-25 377.0 26-27 1056.0 28-29 2983.0 30-31 9654.0 32-33 12430.0 34-35 17748.0 36-37 28029.0 38-39 30990.0 40-41 30889.0 42-43 35543.0 44-45 41079.0 46-47 40328.0 48-49 39027.0 50-51 35694.0 52-53 33207.0 54-55 36413.0 56-57 38134.0 58-59 20752.0 60-61 38122.0 62-63 36569.0 64-65 39162.0 66-67 41026.0 68-69 42835.0 70-71 43734.0 72-73 38968.0 74-75 39920.0 76-77 41655.0 78-79 43208.0 80-81 42388.0 82-83 40028.0 84-85 39632.0 86-87 40276.0 88-89 42125.0 90-91 42900.0 92-93 41853.0 94-95 46966.0 96-97 157965.0 98-99 1032452.0 100-101 2272804.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.85203877913173 #Duplication Level Percentage of deduplicated Percentage of total 1 92.5982817739972 83.20144404838163 2 5.568101142211373 10.006104795122079 3 1.115859988459717 3.0078688486549185 4 0.3616010619276836 1.2996237055560576 5 0.1401802192574167 0.6297739248392297 6 0.07490913432513349 0.40384430653758496 7 0.044110636099883395 0.2774401409793223 8 0.02462141235157694 0.17698272779287072 9 0.01585537843274921 0.12821742700174715 >10 0.05533928656093396 0.7612569565609881 >50 8.460938528045782E-4 0.05537514911150492 >100 2.938725235431634E-4 0.052067969462052235 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 2.1462184275172675E-5 0.0 4 0.0 4.292436855034535E-5 0.0 2.1462184275172675E-5 0.0 5 0.0 8.58487371006907E-5 0.0 2.1462184275172675E-5 0.0 6 0.0 8.58487371006907E-5 0.0 2.1462184275172675E-5 0.0 7 0.0 8.58487371006907E-5 0.0 2.1462184275172675E-5 0.0 8 0.0 8.58487371006907E-5 0.0 2.1462184275172675E-5 2.1462184275172675E-5 9 0.0 1.0731092137586337E-4 0.0 8.58487371006907E-5 2.1462184275172675E-5 10-11 0.0 1.0731092137586337E-4 0.0 1.0731092137586337E-4 2.1462184275172675E-5 12-13 0.0 1.0731092137586337E-4 0.0 1.2877310565103604E-4 2.1462184275172675E-5 14-15 1.0731092137586338E-5 1.5023528992620872E-4 0.0 1.2877310565103604E-4 2.1462184275172675E-5 16-17 3.219327641275901E-5 1.6096638206379506E-4 0.0 1.5023528992620872E-4 2.1462184275172675E-5 18-19 4.292436855034535E-5 1.8242856633896774E-4 0.0 1.716974742013814E-4 3.219327641275901E-5 20-21 4.292436855034535E-5 1.9315965847655406E-4 0.0 2.038907506141404E-4 4.292436855034535E-5 22-23 4.292436855034535E-5 2.1462184275172674E-4 0.0 2.1462184275172674E-4 5.3655460687931685E-5 24-25 5.3655460687931685E-5 2.4681511916448573E-4 0.0 2.575462113020721E-4 6.438655282551802E-5 26-27 8.58487371006907E-5 2.575462113020721E-4 0.0 3.433949484027628E-4 6.438655282551802E-5 28-29 8.58487371006907E-5 2.575462113020721E-4 0.0 6.224033439800076E-4 6.438655282551802E-5 30-31 1.0731092137586337E-4 3.6485713267793543E-4 0.0 0.001781361294839332 6.438655282551802E-5 32-33 1.0731092137586337E-4 3.863193169531081E-4 0.0 0.004421209960685571 6.438655282551802E-5 34-35 1.0731092137586337E-4 3.9705040909069445E-4 0.0 0.007833697260438026 8.58487371006907E-5 36-37 1.0731092137586337E-4 4.1851259336586714E-4 0.0 0.013435327356258093 8.58487371006907E-5 38-39 1.2877310565103604E-4 4.292436855034535E-4 0.0 0.028598360546667586 8.58487371006907E-5 40-41 1.2877310565103604E-4 4.7216805405379884E-4 0.0 0.044072595409067085 8.58487371006907E-5 42-43 1.2877310565103604E-4 4.8289914619138513E-4 0.0 0.052614544750585815 8.58487371006907E-5 44-45 1.2877310565103604E-4 5.258235147417305E-4 0.0 0.06390365367932663 8.58487371006907E-5 46-47 1.2877310565103604E-4 5.580167911544895E-4 0.0 0.07554688864860781 8.58487371006907E-5 48-49 1.2877310565103604E-4 5.580167911544895E-4 0.0 0.08692184631444932 1.0731092137586337E-4 50-51 1.2877310565103604E-4 6.653277125303529E-4 0.0 0.09804998886112636 1.0731092137586337E-4 52-53 1.2877310565103604E-4 6.653277125303529E-4 0.0 0.1317134248967347 1.180420135134497E-4 54-55 1.2877310565103604E-4 6.760588046679393E-4 0.0 0.17257742375666346 1.5023528992620872E-4 56-57 1.2877310565103604E-4 7.082520810806983E-4 0.0 0.22601826260184343 1.8242856633896774E-4 58-59 1.2877310565103604E-4 7.082520810806983E-4 0.0 0.46231691147149456 1.9315965847655406E-4 60-61 1.2877310565103604E-4 7.082520810806983E-4 0.0 0.6774109222772751 1.9315965847655406E-4 62-63 1.2877310565103604E-4 7.082520810806983E-4 0.0 0.6853197371826762 1.9315965847655406E-4 64-65 1.2877310565103604E-4 7.511764496310435E-4 0.0 0.6925739554676846 1.9315965847655406E-4 66-67 1.2877310565103604E-4 7.726386339062162E-4 0.0 0.6991199216716123 2.038907506141404E-4 68-69 1.2877310565103604E-4 8.048319103189752E-4 0.0 0.7053761483878251 2.1462184275172674E-4 70-71 1.2877310565103604E-4 8.370251867317343E-4 0.0 0.7105914591666921 2.575462113020721E-4 72-73 1.2877310565103604E-4 8.58487371006907E-4 0.0 0.7146800052711124 2.7900839557724476E-4 74-75 1.2877310565103604E-4 9.121428316948387E-4 0.0 0.7179959127416267 3.0047057985241744E-4 76-77 1.2877310565103604E-4 9.443361081075977E-4 0.0 0.7214727865942046 3.0047057985241744E-4 78-79 1.5023528992620872E-4 9.443361081075977E-4 0.0 0.7237263159430978 3.0047057985241744E-4 80-81 1.5023528992620872E-4 9.443361081075977E-4 0.0 0.7245740722219671 3.112016719900038E-4 82-83 1.5023528992620872E-4 9.55067200245184E-4 0.0 0.725014046999608 3.6485713267793543E-4 84-85 1.5023528992620872E-4 9.979915687955293E-4 0.0 0.7252715932109102 3.6485713267793543E-4 86-87 1.5023528992620872E-4 0.0010301848452082883 0.0 0.725432559592974 3.6485713267793543E-4 88 1.5023528992620872E-4 0.0010945713980338063 0.0 0.7254432906851116 3.6485713267793543E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4950 0.0 43.453907 1 GTATCAA 9375 0.0 37.017582 1 TCAACGC 11010 0.0 30.901564 4 ATCAACG 11205 0.0 30.43983 3 CAACGCA 11365 0.0 29.936314 5 TATCAAC 11735 0.0 29.139225 2 AACGCAG 11995 0.0 28.434738 6 ACGCAGA 13850 0.0 24.5957 7 CGCAGAG 14180 0.0 24.05322 8 CGAGACC 4080 0.0 23.8076 86-87 AGACCGA 4285 0.0 23.529156 88-89 GAGACCG 4185 0.0 23.416552 88-89 GACCGAG 4445 0.0 22.527994 90-91 ACCGAGG 4565 0.0 22.438627 90-91 ACGAGAC 4530 0.0 21.319374 86-87 GCCCACG 4580 0.0 20.899803 82-83 CACGAGA 4630 0.0 20.858522 84-85 TCTCCGA 4420 0.0 20.839834 74-75 CCCACGA 4650 0.0 20.81977 82-83 GCAGAGT 16435 0.0 20.727133 9 >>END_MODULE