##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139482_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4181004 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.49367759514222 32.0 18.0 33.0 18.0 33.0 2 28.972084217092355 31.0 27.0 33.0 18.0 33.0 3 31.019323349128584 32.0 30.0 33.0 27.0 33.0 4 32.26015425959889 33.0 32.0 33.0 31.0 33.0 5 32.86295444826171 33.0 33.0 33.0 32.0 34.0 6 36.70645423922101 38.0 37.0 38.0 34.0 38.0 7 37.22715668294027 38.0 38.0 38.0 36.0 38.0 8 37.41124284980354 38.0 38.0 38.0 37.0 38.0 9 37.365610748040424 38.0 38.0 38.0 37.0 38.0 10-11 37.4309913360523 38.0 38.0 38.0 37.0 38.0 12-13 37.47972556352494 38.0 38.0 38.0 37.0 38.0 14-15 37.511377291196084 38.0 38.0 38.0 37.0 38.0 16-17 37.545540377383034 38.0 38.0 38.0 37.5 38.0 18-19 37.54121223036381 38.0 38.0 38.0 38.0 38.0 20-21 37.55043107509031 38.0 38.0 38.0 38.0 38.0 22-23 37.55540226669812 38.0 38.0 38.0 38.0 38.0 24-25 37.567264910603875 38.0 38.0 38.0 38.0 38.0 26-27 37.53896487955059 38.0 38.0 38.0 38.0 38.0 28-29 37.51307707054457 38.0 38.0 38.0 37.5 38.0 30-31 37.51851964551031 38.0 38.0 38.0 38.0 38.0 32-33 37.50701262110192 38.0 38.0 38.0 38.0 38.0 34-35 37.40858016825503 38.0 38.0 38.0 37.0 38.0 36-37 37.448939259945476 38.0 38.0 38.0 37.0 38.0 38-39 37.45654316751184 38.0 38.0 38.0 37.0 38.0 40-41 37.45337159646219 38.0 38.0 38.0 37.0 38.0 42-43 37.42680773210624 38.0 38.0 38.0 37.0 38.0 44-45 37.400715144047794 38.0 38.0 38.0 37.0 38.0 46-47 37.37754130085592 38.0 38.0 38.0 37.0 38.0 48-49 37.32095316533076 38.0 38.0 38.0 37.0 38.0 50-51 37.28599299949491 38.0 38.0 38.0 37.0 38.0 52-53 37.265233831255756 38.0 38.0 38.0 37.0 38.0 54-55 37.23639754340542 38.0 38.0 38.0 37.0 38.0 56-57 37.19013169755091 38.0 38.0 38.0 37.0 38.0 58-59 37.18410787597881 38.0 38.0 38.0 37.0 38.0 60-61 37.181989113048374 38.0 38.0 38.0 36.5 38.0 62-63 37.185315118621816 38.0 38.0 38.0 36.0 38.0 64-65 37.19155106687734 38.0 38.0 38.0 36.0 38.0 66-67 37.186362334357554 38.0 38.0 38.0 36.0 38.0 68-69 37.17403874927105 38.0 38.0 38.0 36.0 38.0 70-71 37.16913192897485 38.0 38.0 38.0 36.0 38.0 72-73 37.15870112279781 38.0 38.0 38.0 36.0 38.0 74-75 37.15002191118904 38.0 38.0 38.0 36.0 38.0 76-77 37.13041850591267 38.0 38.0 38.0 36.0 38.0 78-79 37.11229129398083 38.0 38.0 38.0 36.0 38.0 80-81 37.097132558084525 38.0 38.0 38.0 36.0 38.0 82-83 37.01922407981677 38.0 38.0 38.0 36.0 38.0 84-85 37.03722305207579 38.0 38.0 38.0 36.0 38.0 86-87 37.02917704202398 38.0 38.0 38.0 36.0 38.0 88-89 37.008304766236634 38.0 38.0 38.0 36.0 38.0 90-91 37.00750369809049 38.0 38.0 38.0 36.0 38.0 92-93 36.98699508300439 38.0 38.0 38.0 36.0 38.0 94-95 36.93135391495089 38.0 38.0 38.0 35.0 38.0 96-97 36.85801671140737 38.0 38.0 38.0 35.0 38.0 98-99 36.89345541391674 38.0 38.0 38.0 35.0 38.0 100 35.520675951261204 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 2.0 20 19.0 21 44.0 22 186.0 23 493.0 24 1324.0 25 2707.0 26 5115.0 27 8438.0 28 13785.0 29 20205.0 30 27147.0 31 35495.0 32 45975.0 33 63012.0 34 95936.0 35 182787.0 36 616961.0 37 3061372.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.88467746024639 21.181132570071686 13.9162746555612 24.01791531412072 2 14.32764317022553 21.616878935488838 41.83169287854128 22.223785015744348 3 18.726946227516667 26.14043672951787 30.16905581602043 24.963561226945032 4 12.86726824466085 17.950353551443623 39.02251707962968 30.159861124265845 5 13.542656261510395 37.98613921440879 35.3957087819098 13.07549574217102 6 30.25084405563831 38.32335486883055 18.568745688834547 12.857055386696592 7 26.788063345550494 32.84213552534272 23.11896855396455 17.25083257514224 8 24.073093448367906 37.85526155918531 20.974483640771453 17.09716135167534 9 25.55821520381229 17.421365777215232 21.523562283126253 35.49685673584622 10-11 24.322052789234355 27.170543247507055 28.938910366983624 19.568493596274962 12-13 25.018141575564144 24.56504466391326 29.231818481876605 21.184995278645992 14-15 22.133583225464506 26.15384964951002 26.600656206021327 25.111910919004142 16-17 21.78267468770659 29.28507124126167 27.358787506541493 21.57346656449025 18-19 21.842169966830934 28.44270180081148 28.974177015855524 20.740951216502065 20-21 22.47893579655905 27.63640233988903 28.93416416176399 20.950497701787924 22-23 22.305588287669096 27.52672349676481 28.75707889675828 21.41060931880781 24-25 22.132625103873494 27.620374848764495 28.808072878170083 21.438927169191924 26-27 22.071637528502517 27.754330115677483 28.74817872768287 21.42585362813713 28-29 22.024551630423403 27.748112032055516 28.81299164616589 21.41434469135519 30-31 22.199208301975222 27.684512098900676 28.74084025607868 21.375439343045425 32-33 21.97057825282074 27.90061392988387 28.677268020423814 21.451539796871575 34-35 22.149089989876593 27.913973457445667 28.650215709762595 21.286720842915148 36-37 22.119032069262033 27.715406820962745 28.661504898908923 21.504056210866302 38-39 21.93052054207562 27.837881264843112 28.71851677827023 21.513081414811037 40-41 22.303653486261197 27.6931878589144 28.7151963373316 21.287962317492802 42-43 22.007617568883198 27.748916996029884 28.56506923195619 21.678396203130728 44-45 22.01312734942438 27.852136339186362 28.494754572368215 21.639981739021046 46-47 22.112084104862156 27.84968241391812 28.45013342448212 21.588100056737606 48-49 22.04015239855906 28.085296087233115 28.276828533347242 21.59772298086059 50-51 21.998678144945504 28.259045164661895 27.996685115425358 21.74559157496724 52-53 22.031679974643076 28.03153896013746 27.953197568129077 21.983583497090386 54-55 22.243448150814835 27.73547084402536 28.31615262467831 21.704928380481494 56-57 21.990823698362398 27.406894678089795 28.51212602930458 22.090155594243228 58-59 21.844932623332962 27.176255404485257 28.453496648865173 22.525315323316615 60-61 22.077095627906687 27.52267663351356 28.825173305844302 21.57505443273545 62-63 21.573124285115306 27.81228085915114 28.831788497971182 21.782806357762368 64-65 21.373081315224727 28.218947273978323 28.389482371552766 22.018489039244184 66-67 21.474125063524717 29.074331645378116 27.758317876095635 21.69322541500153 68-69 21.663835979597533 28.966080450341554 27.61187042995146 21.758213140109458 70-71 21.669429993500135 28.390294837322553 27.598879663300924 22.341395505876385 72-73 21.83980805021408 27.6922223482432 27.615012375839964 22.85295722570275 74-75 21.87060834046027 27.839903444315716 27.846239009977058 22.443249205246957 76-77 22.27793753441566 27.503727356719203 27.23379238612573 22.984542722739405 78-79 22.449853589756756 27.50827549997857 26.719398971697416 23.32247193856726 80-81 22.224880995272994 28.018706637704 26.936339676199584 22.820072690823423 82-83 22.16500929505149 27.698660390120228 27.00344087589298 23.1328894389353 84-85 22.191504327438828 28.142028596718703 27.0038641134237 22.66260296241877 86-87 22.8744800379273 27.957555188539416 27.057372118213824 22.110592655319465 88-89 22.51380548139347 28.194929579817096 27.452747019399848 21.838517919389588 90-91 22.49730880446975 27.68699548566842 27.21095021748238 22.604745492379443 92-93 22.476702745149723 27.164159843604992 27.53514952160773 22.823987889637547 94-95 21.639493358833175 27.696112205066132 28.24611071599798 22.418283720102714 96-97 21.80526197309569 27.533903156770002 28.463100786762674 22.197734083371635 98-99 22.98729216944981 29.33987551213228 28.84688975851553 18.82594255990238 100 29.54158080723513 40.53641133547752 29.922007857287348 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 973.0 1 822.5 2 719.0 3 859.0 4 1110.5 5 1484.5 6 1821.5 7 2338.0 8 3017.5 9 3399.5 10 3507.0 11 3703.5 12 4204.0 13 5277.0 14 7449.0 15 9994.0 16 11840.5 17 12761.5 18 12919.0 19 12679.0 20 12303.0 21 12153.0 22 12900.5 23 15433.5 24 19882.0 25 25607.0 26 32989.0 27 41722.5 28 50708.0 29 60705.5 30 70357.0 31 79381.0 32 90062.0 33 101517.0 34 111923.5 35 122328.5 36 133349.0 37 142529.5 38 150537.0 39 157270.0 40 163620.0 41 169769.0 42 173036.5 43 176011.5 44 178954.5 45 181314.0 46 182060.5 47 180887.0 48 179005.0 49 176117.5 50 172247.0 51 166043.0 52 157144.0 53 146761.0 54 135775.5 55 124201.5 56 111591.0 57 98563.0 58 85997.0 59 72648.5 60 59398.0 61 47477.5 62 37447.0 63 28818.5 64 21161.0 65 15553.5 66 11546.5 67 8714.5 68 6558.5 69 4874.0 70 3588.0 71 2588.5 72 1849.0 73 1241.0 74 788.5 75 510.0 76 332.0 77 214.0 78 143.5 79 89.5 80 59.0 81 44.0 82 35.5 83 29.0 84 20.0 85 10.0 86 4.0 87 1.5 88 1.0 89 1.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.010906471268623517 3 4.30518602708823E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 1.076304744446985E-4 22-23 0.0 24-25 2.2724144080163124E-4 26-27 3.708019537196101E-4 28-29 0.0018905946386804416 30-31 0.0023360799643765773 32-33 0.0025340569447031545 34-35 6.024366393288952E-4 36-37 0.0 38-39 4.869086099319131E-5 40-41 1.8364238510322354E-4 42-43 0.0021214968936721793 44-45 2.4885436781098616E-4 46-47 3.895590141693923E-4 48-49 0.0011040309311396873 50-51 9.734496725238449E-4 52-53 0.0 54-55 0.0028912459753856023 56-57 0.053766205715519946 58-59 0.0692529861491455 60-61 0.04559691729076826 62-63 0.007663212031399815 64-65 0.0 66-67 0.0 68-69 1.0761352217712916E-4 70-71 0.0011961133926369977 72-73 0.007318140434428432 74-75 0.011768626311598848 76-77 0.01265510022237419 78-79 0.004017861374445298 80-81 0.007808840723247392 82-83 0.04570219374867437 84-85 0.038763448901186215 86-87 0.008822954435637064 88-89 0.002326209763281316 90-91 0.0027295774448229493 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 15.0 20-21 110.0 22-23 252.0 24-25 329.0 26-27 1068.0 28-29 3180.0 30-31 10013.0 32-33 12334.0 34-35 17712.0 36-37 27990.0 38-39 16339.0 40-41 30192.0 42-43 33526.0 44-45 39016.0 46-47 39377.0 48-49 37233.0 50-51 18537.0 52-53 2205.0 54-55 2038.0 56-57 1883.0 58-59 19599.0 60-61 36070.0 62-63 33948.0 64-65 34650.0 66-67 36910.0 68-69 38351.0 70-71 37633.0 72-73 34944.0 74-75 34810.0 76-77 37051.0 78-79 37931.0 80-81 38493.0 82-83 35428.0 84-85 34198.0 86-87 35303.0 88-89 37251.0 90-91 38010.0 92-93 37120.0 94-95 41839.0 96-97 142246.0 98-99 999508.0 100-101 2066362.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.73755490410161 #Duplication Level Percentage of deduplicated Percentage of total 1 92.29731458240371 82.82535334839591 2 5.834261352292891 10.471046968525227 3 1.1454726176311758 3.083757357474679 4 0.3765646462852441 1.351679624838628 5 0.15501017417617896 0.6955117007914606 6 0.06530243108142912 0.35160482967246337 7 0.04189696918931642 0.2631812101059215 8 0.019000816388044444 0.13640694430759134 9 0.01882368864732993 0.15202726141387354 >10 0.045628989656028435 0.6137704892417092 >50 5.079454330957331E-4 0.03369083428631586 >100 2.157868155550188E-4 0.021969430946217366 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.3917700150490168E-5 2 0.0 2.3917700150490168E-5 0.0 0.0 4.7835400300980337E-5 3 0.0 2.3917700150490168E-5 0.0 0.0 4.7835400300980337E-5 4 0.0 9.567080060196067E-5 0.0 2.3917700150490168E-5 4.7835400300980337E-5 5 0.0 9.567080060196067E-5 0.0 2.3917700150490168E-5 4.7835400300980337E-5 6 4.7835400300980337E-5 9.567080060196067E-5 0.0 2.3917700150490168E-5 4.7835400300980337E-5 7 4.7835400300980337E-5 9.567080060196067E-5 0.0 2.3917700150490168E-5 4.7835400300980337E-5 8 4.7835400300980337E-5 9.567080060196067E-5 0.0 2.3917700150490168E-5 4.7835400300980337E-5 9 4.7835400300980337E-5 9.567080060196067E-5 0.0 2.3917700150490168E-5 4.7835400300980337E-5 10-11 4.7835400300980337E-5 9.567080060196067E-5 0.0 5.9794250376225426E-5 4.7835400300980337E-5 12-13 4.7835400300980337E-5 9.567080060196067E-5 0.0 8.371195052671559E-5 4.7835400300980337E-5 14-15 4.7835400300980337E-5 1.6742390105343118E-4 0.0 9.567080060196067E-5 4.7835400300980337E-5 16-17 8.371195052671559E-5 1.6742390105343118E-4 0.0 1.1958850075245085E-4 4.7835400300980337E-5 18-19 9.567080060196067E-5 1.6742390105343118E-4 0.0 1.1958850075245085E-4 4.7835400300980337E-5 20-21 9.567080060196067E-5 1.6742390105343118E-4 0.0 1.1958850075245085E-4 4.7835400300980337E-5 22-23 9.567080060196067E-5 2.152593013544115E-4 0.0 1.4350620090294102E-4 4.7835400300980337E-5 24-25 9.567080060196067E-5 2.272181514296566E-4 0.0 1.554650509781861E-4 4.7835400300980337E-5 26-27 9.567080060196067E-5 2.391770015049017E-4 0.0 3.3484780210686236E-4 4.7835400300980337E-5 28-29 9.567080060196067E-5 2.391770015049017E-4 0.0 9.088726057186265E-4 4.7835400300980337E-5 30-31 9.567080060196067E-5 3.109301019563722E-4 0.0 0.002511358515801468 4.7835400300980337E-5 32-33 9.567080060196067E-5 3.109301019563722E-4 0.0 0.005931589637321562 4.7835400300980337E-5 34-35 9.567080060196067E-5 3.3484780210686236E-4 0.0 0.010332446465011753 4.7835400300980337E-5 36-37 9.567080060196067E-5 3.707243523325976E-4 0.0 0.020617057529722527 4.7835400300980337E-5 38-39 9.567080060196067E-5 4.066009025583329E-4 0.0 0.21834468467382476 4.7835400300980337E-5 40-41 9.567080060196067E-5 5.022717031602935E-4 0.0 0.42147771205193774 4.7835400300980337E-5 42-43 1.1958850075245085E-4 5.381482533860288E-4 0.0 0.4440440621439252 5.9794250376225426E-5 44-45 1.1958850075245085E-4 5.859836536870092E-4 0.0 0.4742640762840695 7.175310045147051E-5 46-47 1.1958850075245085E-4 6.218602039127444E-4 0.0 0.5066964776881342 7.175310045147051E-5 48-49 1.1958850075245085E-4 6.218602039127444E-4 0.0 0.5396311507953593 7.175310045147051E-5 50-51 1.3154735082769592E-4 6.457779040632346E-4 0.0 0.5722429349505526 7.175310045147051E-5 52-53 1.4350620090294102E-4 6.457779040632346E-4 0.0 1.1496760108337614 7.175310045147051E-5 54-55 1.4350620090294102E-4 6.457779040632346E-4 0.0 1.9148630328983183 7.175310045147051E-5 56-57 1.4350620090294102E-4 6.457779040632346E-4 0.0 2.7532142997232247 7.175310045147051E-5 58-59 1.4350620090294102E-4 6.457779040632346E-4 0.0 3.614335217091397 7.175310045147051E-5 60-61 1.4350620090294102E-4 6.696956042137247E-4 0.0 3.839376857807359 7.175310045147051E-5 62-63 1.4350620090294102E-4 6.696956042137247E-4 0.0 3.8472338223067952 7.175310045147051E-5 64-65 1.4350620090294102E-4 7.653664048156854E-4 0.0 3.8544210912020174 7.175310045147051E-5 66-67 1.6742390105343118E-4 8.132018051166658E-4 0.0 3.8609147467928757 7.175310045147051E-5 68-69 1.6742390105343118E-4 8.371195052671559E-4 0.0 3.8673486081333577 7.175310045147051E-5 70-71 1.7938275112867625E-4 8.371195052671559E-4 0.0 3.872801843767669 7.175310045147051E-5 72-73 2.152593013544115E-4 8.49078355342401E-4 0.0 3.8770233178442304 1.4350620090294102E-4 74-75 2.152593013544115E-4 8.61037205417646E-4 0.0 3.8801326188637946 1.4350620090294102E-4 76-77 2.152593013544115E-4 8.849549055681362E-4 0.0 3.883182125632982 1.4350620090294102E-4 78-79 2.152593013544115E-4 9.088726057186264E-4 0.0 3.8851314181952468 1.4350620090294102E-4 80-81 2.152593013544115E-4 9.088726057186264E-4 0.0 3.8858011137994604 1.4350620090294102E-4 82-83 2.152593013544115E-4 9.088726057186264E-4 0.0 3.886494727103825 1.4350620090294102E-4 84-85 2.152593013544115E-4 9.088726057186264E-4 0.0 3.8869372045566086 1.4350620090294102E-4 86-87 2.152593013544115E-4 9.088726057186264E-4 0.0 3.8870209165071357 1.4350620090294102E-4 88 2.391770015049017E-4 9.567080060196068E-4 0.0 3.8870328753572108 1.4350620090294102E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCTCGT 4380 0.0 65.04804 94 TATCTCG 5445 0.0 48.804802 94 GGTATCA 4935 0.0 47.593662 1 GCCGTCT 2510 0.0 37.21338 90-91 CCGTCTT 2485 0.0 36.908466 90-91 TGCCGTC 2435 0.0 36.85511 88-89 TATGCCG 2530 0.0 35.070312 86-87 TCTCGTA 2450 0.0 34.987885 82-83 ATGCCGT 2695 0.0 34.121727 88-89 GTATCAA 8435 0.0 33.739506 1 CTCGTAT 2685 0.0 32.224934 82-83 TCGTATG 2930 0.0 30.871813 84-85 CGTATGC 2885 0.0 30.696241 84-85 TCAACGC 9565 0.0 29.256798 4 ATCAACG 9785 0.0 28.599005 3 CAACGCA 9875 0.0 28.338358 5 CTATCTC 6950 0.0 28.256159 92-93 AACGCAG 10130 0.0 27.625002 6 TATCAAC 10425 0.0 26.929045 2 GTATGCC 3465 0.0 26.23916 86-87 >>END_MODULE