##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139481_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4790385 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.576088978234527 30.0 18.0 33.0 18.0 33.0 2 31.3267332375164 32.0 32.0 33.0 27.0 34.0 3 31.588936588604046 33.0 31.0 33.0 29.0 34.0 4 32.73693408776121 33.0 33.0 33.0 32.0 34.0 5 32.69559837048588 33.0 33.0 33.0 32.0 34.0 6 36.99423219636835 38.0 37.0 38.0 35.0 38.0 7 37.015874715706566 38.0 38.0 38.0 35.0 38.0 8 37.35685962610521 38.0 38.0 38.0 37.0 38.0 9 37.441496247170114 38.0 38.0 38.0 37.0 38.0 10-11 37.4465419794025 38.0 38.0 38.0 37.0 38.0 12-13 37.48435741594882 38.0 38.0 38.0 37.0 38.0 14-15 37.490130438367686 38.0 38.0 38.0 37.0 38.0 16-17 37.524778906079575 38.0 38.0 38.0 37.5 38.0 18-19 37.52444584307942 38.0 38.0 38.0 38.0 38.0 20-21 37.53133602375967 38.0 38.0 38.0 38.0 38.0 22-23 37.54214222451148 38.0 38.0 38.0 38.0 38.0 24-25 37.55415309373606 38.0 38.0 38.0 38.0 38.0 26-27 37.522626402620816 38.0 38.0 38.0 38.0 38.0 28-29 37.49778094353266 38.0 38.0 38.0 37.0 38.0 30-31 37.50309578093461 38.0 38.0 38.0 38.0 38.0 32-33 37.49204498513241 38.0 38.0 38.0 38.0 38.0 34-35 37.39343799053209 38.0 38.0 38.0 37.0 38.0 36-37 37.43669182874697 38.0 38.0 38.0 37.0 38.0 38-39 37.44525954639015 38.0 38.0 38.0 37.0 38.0 40-41 37.44078700625792 38.0 38.0 38.0 37.0 38.0 42-43 37.404984383522674 38.0 38.0 38.0 37.0 38.0 44-45 37.37384657681695 38.0 38.0 38.0 37.0 38.0 46-47 37.34521462650547 38.0 38.0 38.0 37.0 38.0 48-49 37.28370654983615 38.0 38.0 38.0 37.0 38.0 50-51 37.25253377227324 38.0 38.0 38.0 37.0 38.0 52-53 37.231619596202265 38.0 38.0 38.0 37.0 38.0 54-55 37.20283745445941 38.0 38.0 38.0 37.0 38.0 56-57 37.158233377530834 38.0 38.0 38.0 37.0 38.0 58-59 37.15306574198325 38.0 38.0 38.0 37.0 38.0 60-61 37.15517370128105 38.0 38.0 38.0 36.5 38.0 62-63 37.161659128161965 38.0 38.0 38.0 36.0 38.0 64-65 37.16760488755622 38.0 38.0 38.0 36.0 38.0 66-67 37.166081125273436 38.0 38.0 38.0 36.0 38.0 68-69 37.159504465887764 38.0 38.0 38.0 36.0 38.0 70-71 37.15475874891622 38.0 38.0 38.0 36.0 38.0 72-73 37.1447274092522 38.0 38.0 38.0 36.0 38.0 74-75 37.140299712843394 38.0 38.0 38.0 36.0 38.0 76-77 37.126041144264995 38.0 38.0 38.0 36.0 38.0 78-79 37.11209267821636 38.0 38.0 38.0 36.0 38.0 80-81 37.10272313255422 38.0 38.0 38.0 36.0 38.0 82-83 37.05550444039256 38.0 38.0 38.0 36.0 38.0 84-85 37.04533388050055 38.0 38.0 38.0 36.0 38.0 86-87 37.034757109616635 38.0 38.0 38.0 36.0 38.0 88-89 37.01784024139968 38.0 38.0 38.0 36.0 38.0 90-91 37.01039343550188 38.0 38.0 38.0 36.0 38.0 92-93 36.990953239794635 38.0 38.0 38.0 36.0 38.0 94-95 36.974347925715975 38.0 38.0 38.0 36.0 38.0 96-97 36.95892960541773 38.0 38.0 38.0 35.0 38.0 98-99 36.97195103447105 38.0 38.0 38.0 35.0 38.0 100 35.565559621016945 38.0 36.0 38.0 30.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 5.0 20 9.0 21 50.0 22 184.0 23 691.0 24 1547.0 25 3218.0 26 5828.0 27 10205.0 28 16187.0 29 24423.0 30 32827.0 31 42572.0 32 54803.0 33 72604.0 34 108596.0 35 199105.0 36 650146.0 37 3567384.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.8025419668774 21.91715279669588 14.509856723415758 23.770448513010958 2 14.458447573999036 20.51369520545157 41.68793858655634 23.339918633993054 3 18.219069216042506 25.588052144008717 30.819257636552162 25.373621003396625 4 13.041102124359524 18.00064086707018 38.67712094121871 30.281136067351582 5 13.701195206648316 37.03213833543651 35.36064429059459 13.90602216732058 6 30.053722195606408 38.05671151692401 18.504900963074995 13.384665324394597 7 26.766157626161576 32.711775775851 22.887930719555943 17.634135878431483 8 24.134323232892555 37.28775453329952 20.815675566786386 17.762246667021543 9 25.33721193599262 17.637705528887555 21.546076150455548 35.47900638466428 10-11 24.36605826045297 27.008319790580504 28.525692611345434 20.099929337621088 12-13 25.13257285166015 24.494680490190245 28.883962353756537 21.48878430439307 14-15 22.33832980021439 25.938207471842034 26.447321039958165 25.276141687985415 16-17 21.828255975250425 29.084499471336855 27.23499259454094 21.852251958871783 18-19 21.845874600893247 28.144094890076687 29.028825449311483 20.981205059718583 20-21 22.598429314398793 27.251398312245183 28.962658823919906 21.18751354943612 22-23 22.40626111005918 27.062554108532506 28.861666076217794 21.669518705190516 24-25 22.154790883689447 27.25703866572592 28.897312325821655 21.690858124762975 26-27 22.045969701246847 27.387953994803492 28.858480819614762 21.7075954843349 28-29 22.02477997651579 27.328955211660734 28.92779879604787 21.718466015775608 30-31 22.226146334284735 27.242551654391246 28.854633562258066 21.676668449065957 32-33 22.015433870533002 27.43287028650067 28.76227035012607 21.78942549284026 34-35 22.218567761780037 27.44676741219759 28.716686000430418 21.617978825591955 36-37 22.157444171872235 27.312041088153226 28.748103234617233 21.782411505357306 38-39 22.032167180244777 27.46967035246953 28.827748116188566 21.67041435109712 40-41 22.22937283684876 27.342039789990107 28.70833427054119 21.720253102619942 42-43 22.115704663689858 27.442123693927527 28.515868739656085 21.92630290272653 44-45 22.162133715556028 27.517397450729646 28.45657558692285 21.863893246791474 46-47 22.270181218751326 27.52795183482664 28.207736011714157 21.994130934707876 48-49 22.193961767502422 27.613576769847608 28.178773653539036 22.013687809110934 50-51 22.206688359910345 27.781495982953547 28.007594370983274 22.004221286152838 52-53 22.39197807088219 27.67898312241749 27.920891716276643 22.008147090423687 54-55 22.335319555290695 27.610189909854583 27.979012601835368 22.075477933019354 56-57 22.249362708518543 27.720148156458386 28.013775354965265 22.016713780057806 58-59 22.25060425620806 27.68256216745339 27.990304017636703 22.076529558701843 60-61 22.279778179833517 27.717992373333146 28.027130812533706 21.97509863429963 62-63 22.27131894573528 27.77569003799738 28.048070401991843 21.904920614275493 64-65 22.23785831320832 27.74621808635322 28.00878186564181 22.00714173479665 66-67 22.258183475310723 27.91380056135779 27.787966362001352 22.040049601330136 68-69 22.16266216067338 27.68500779534931 28.02760731661137 22.124722727365945 70-71 22.310965436218417 27.50759644212726 27.963467247589712 22.21797087406461 72-73 22.34147999207046 27.70064113323876 27.842045597774185 22.11583327691659 74-75 22.184349651953518 27.840357938102855 27.813571451787084 22.161720958156543 76-77 22.373589299084383 27.484447574554633 27.931714070872975 22.210249055488013 78-79 22.297823061021074 27.570274971892513 27.80510224372162 22.326799723364797 80-81 22.32199697087098 27.67714377344157 27.74314219190566 22.257717063781794 82-83 22.40674709614032 27.5902073325354 27.80895214085787 22.194093430466413 84-85 22.40872024819073 27.57959246769043 27.807149626761134 22.204537657357708 86-87 22.366609555318977 27.608197324544008 27.876372914408602 22.148820205728413 88-89 22.428156674289436 27.59363863599097 27.817929801875042 22.160274887844555 90-91 22.460459689468134 27.63278707527657 27.828665766346965 22.07808746890833 92-93 22.506142572192026 27.62795905310301 27.7723431023081 22.093555272396866 94-95 22.355673134809376 27.65289701722009 27.838055797466577 22.153374050503956 96-97 22.520552953601268 27.743032126576068 27.84969223209294 21.886722687729726 98-99 23.50856519764069 29.674735234961314 28.047419989799554 18.76927957759844 100 29.875378689336273 40.72527924404797 29.39934206661576 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 927.0 1 828.5 2 883.0 3 1120.0 4 1398.5 5 1895.5 6 2413.0 7 3140.0 8 4079.5 9 4806.0 10 5123.5 11 5319.0 12 5885.5 13 7286.0 14 10063.0 15 13201.5 16 15478.0 17 16842.5 18 17020.0 19 16023.5 20 14725.5 21 13821.0 22 14212.5 23 16554.5 24 20800.5 25 27024.5 26 34929.5 27 43918.5 28 54166.0 29 66048.5 30 77385.0 31 88400.5 32 101395.5 33 115278.5 34 127301.0 35 138397.5 36 150942.0 37 162249.0 38 171878.5 39 179368.0 40 186232.5 41 192136.0 42 194777.0 43 198451.0 44 202475.0 45 204452.5 46 204142.5 47 202922.0 48 201733.5 49 198834.5 50 194365.5 51 188635.5 52 180620.5 53 170357.0 54 158737.5 55 147195.5 56 134007.0 57 119734.0 58 106147.0 59 90346.0 60 74688.5 61 60629.0 62 47742.5 63 36915.5 64 27660.5 65 20471.0 66 15244.5 67 11717.0 68 9005.0 69 6687.0 70 4924.0 71 3440.5 72 2324.0 73 1517.0 74 981.5 75 636.5 76 399.0 77 250.5 78 162.5 79 105.5 80 76.5 81 58.5 82 39.0 83 24.5 84 18.5 85 15.0 86 11.0 87 6.5 88 4.0 89 2.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.008851063119143868 3 7.515053591725926E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 3.131308281475389E-5 22-23 1.043810501213795E-5 24-25 1.6702094244280865E-4 26-27 2.1923494312680182E-4 28-29 0.0017857204395127927 30-31 0.0024979444216772662 32-33 0.0020419188130985635 34-35 3.7792553733137957E-4 36-37 1.0537584349411123E-5 38-39 5.298076120214619E-5 40-41 1.2792204601078832E-4 42-43 0.002091667376403375 44-45 1.5128664973120684E-4 46-47 4.358899112081353E-4 48-49 8.242157669399143E-4 50-51 0.0010635640140900075 52-53 0.0 54-55 0.002854826882848245 56-57 0.05177241521318433 58-59 0.0674337248105632 60-61 0.044350346315051685 62-63 0.007362031010175163 64-65 0.0 66-67 0.0 68-69 1.430774821796996E-4 70-71 0.001408623835913864 72-73 0.007267811942570673 74-75 0.011588963382554747 76-77 0.01294964901622903 78-79 0.0038392290928026714 80-81 0.0074168482236143096 82-83 0.043729830317791804 84-85 0.03651184424637517 86-87 0.008069477682232559 88-89 0.002090728133547824 90-91 0.0024060529379501547 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 34.0 20-21 139.0 22-23 329.0 24-25 343.0 26-27 1011.0 28-29 2646.0 30-31 8470.0 32-33 11149.0 34-35 15619.0 36-37 24985.0 38-39 28407.0 40-41 28367.0 42-43 32521.0 44-45 38102.0 46-47 39025.0 48-49 37350.0 50-51 33647.0 52-53 31481.0 54-55 33759.0 56-57 35393.0 58-59 36729.0 60-61 36258.0 62-63 35143.0 64-65 37001.0 66-67 38985.0 68-69 40427.0 70-71 39772.0 72-73 36885.0 74-75 37883.0 76-77 39928.0 78-79 41083.0 80-81 40742.0 82-83 37796.0 84-85 37749.0 86-87 38659.0 88-89 40733.0 90-91 41821.0 92-93 40751.0 94-95 46956.0 96-97 146515.0 98-99 1112572.0 100-101 2383220.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.5114197123484 #Duplication Level Percentage of deduplicated Percentage of total 1 91.75121877064919 81.2103063372843 2 6.050179602685961 10.710199722968527 3 1.2953668318097549 3.4396427199530475 4 0.43494393419136534 1.5399002044220795 5 0.1962962870212844 0.8687231524258257 6 0.09617030982398302 0.5107302394018286 7 0.05144194255130823 0.3187239557584151 8 0.03681269569620448 0.2606675167607773 9 0.022830901601984407 0.18187159626941127 >10 0.0633345037695186 0.8352422354739184 >50 9.99920252338008E-4 0.06110464407235089 >100 4.042999471235715E-4 0.06288767520952408 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 4.17502977318107E-5 0.0 0.0 0.0 4 0.0 1.0437574432952675E-4 0.0 0.0 0.0 5 0.0 1.0437574432952675E-4 0.0 0.0 0.0 6 1.252508931954321E-4 1.0437574432952675E-4 0.0 2.087514886590535E-5 0.0 7 1.252508931954321E-4 1.0437574432952675E-4 0.0 2.087514886590535E-5 0.0 8 1.252508931954321E-4 1.252508931954321E-4 0.0 2.087514886590535E-5 0.0 9 1.252508931954321E-4 1.670011909272428E-4 0.0 2.087514886590535E-5 0.0 10-11 1.252508931954321E-4 1.670011909272428E-4 0.0 3.1312723298858024E-5 2.087514886590535E-5 12-13 1.252508931954321E-4 1.670011909272428E-4 0.0 6.262544659771605E-5 2.087514886590535E-5 14-15 1.252508931954321E-4 1.670011909272428E-4 0.0 6.262544659771605E-5 2.087514886590535E-5 16-17 1.8787633979314814E-4 1.670011909272428E-4 0.0 6.262544659771605E-5 2.087514886590535E-5 18-19 1.8787633979314814E-4 1.8787633979314817E-4 0.0 6.262544659771605E-5 2.087514886590535E-5 20-21 1.8787633979314814E-4 2.087514886590535E-4 0.0 6.262544659771605E-5 2.087514886590535E-5 22-23 1.8787633979314814E-4 2.7137693525676953E-4 0.0 6.262544659771605E-5 3.1312723298858024E-5 24-25 1.8787633979314814E-4 2.922520841226749E-4 0.0 7.306302103066872E-5 6.262544659771605E-5 26-27 1.8787633979314814E-4 2.922520841226749E-4 0.0 1.7743876536019547E-4 6.262544659771605E-5 28-29 1.8787633979314814E-4 2.922520841226749E-4 0.0 5.11441147214681E-4 6.262544659771605E-5 30-31 1.8787633979314814E-4 3.444399562874383E-4 0.0 0.0018787633979314815 6.262544659771605E-5 32-33 1.8787633979314814E-4 3.5487753072039094E-4 0.0 0.004947410281219568 6.262544659771605E-5 34-35 1.8787633979314814E-4 4.17502977318107E-4 0.0 0.009195503075431308 6.262544659771605E-5 36-37 1.8787633979314814E-4 5.010035727817284E-4 0.0 0.01615736522221074 6.262544659771605E-5 38-39 1.8787633979314814E-4 5.427538705135391E-4 0.0 0.031208347554528497 8.35005954636214E-5 40-41 1.8787633979314814E-4 6.471296148430659E-4 0.0 0.0470212728204518 8.35005954636214E-5 42-43 1.8787633979314814E-4 7.306302103066872E-4 0.0 0.058022476272783924 8.35005954636214E-5 44-45 1.8787633979314814E-4 8.454435290691667E-4 0.0 0.07102769401624295 8.35005954636214E-5 46-47 1.8787633979314814E-4 9.185065500998354E-4 0.0 0.08445041473702009 8.35005954636214E-5 48-49 1.8787633979314814E-4 9.185065500998354E-4 0.0 0.09805057422315742 8.35005954636214E-5 50-51 2.1918906309200618E-4 0.0010750701665941254 0.0 0.1110244792433176 8.35005954636214E-5 52-53 2.2962663752495885E-4 0.0010855077410270781 0.0 0.14071937850506797 9.393816989657408E-5 54-55 2.2962663752495885E-4 0.0011168204643259363 0.0 0.1783363967614294 1.1481331876247942E-4 56-57 2.505017863908642E-4 0.0011690083364906997 0.0 0.2301172035233076 1.252508931954321E-4 58-59 2.505017863908642E-4 0.0011690083364906997 0.0 0.2641541337491663 1.252508931954321E-4 60-61 2.7137693525676953E-4 0.0012107586342225104 0.0 0.2803323741202429 1.252508931954321E-4 62-63 3.5487753072039094E-4 0.001283821655253179 0.0 0.2933793421614338 1.252508931954321E-4 64-65 3.5487753072039094E-4 0.0015030107183451851 0.0 0.3002368285638837 1.252508931954321E-4 66-67 3.5487753072039094E-4 0.0015030107183451851 0.0 0.30619668356509966 1.252508931954321E-4 68-69 3.5487753072039094E-4 0.0015134482927781378 0.0 0.3122817894595111 1.252508931954321E-4 70-71 3.757526795862963E-4 0.0015447610160769958 0.0 0.31742751365495675 1.252508931954321E-4 72-73 4.592532750499177E-4 0.0015656361649429012 0.0 0.3217382318957662 1.670011909272428E-4 74-75 4.592532750499177E-4 0.0015760737393758538 0.0 0.32486950422565203 1.670011909272428E-4 76-77 4.592532750499177E-4 0.0016491367604065227 0.0 0.32783377536461056 1.670011909272428E-4 78-79 4.592532750499177E-4 0.0016804494837053807 0.0 0.3297542890602739 1.670011909272428E-4 80-81 4.592532750499177E-4 0.0016908870581383334 0.0 0.33047448169614757 1.670011909272428E-4 82-83 4.592532750499177E-4 0.0016908870581383334 0.0 0.33097548526892934 1.8787633979314814E-4 84-85 4.6969084948287037E-4 0.0016908870581383334 0.0 0.33115292403428953 1.8787633979314814E-4 86-87 4.8012842391582304E-4 0.0016908870581383334 0.0 0.331267737353052 1.8787633979314814E-4 88 4.8012842391582304E-4 0.0017535125047360494 0.0 0.3312886125019179 1.8787633979314814E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6290 0.0 49.26663 1 GTATCAA 11520 0.0 35.80472 1 TCAACGC 13390 0.0 30.641235 4 ATCAACG 13545 0.0 30.259047 3 CAACGCA 13725 0.0 29.924484 5 AACGCAG 14165 0.0 28.994955 6 TATCAAC 14205 0.0 28.886538 2 TGGTATC 3040 0.0 24.886576 2 ACGCAGA 16450 0.0 24.863466 7 CGCAGAG 16915 0.0 24.179958 8 GTGGTAT 3315 0.0 23.724648 1 GCAGAGT 19510 0.0 20.963814 9 GAGTACT 10450 0.0 20.162586 12-13 CAGAGTA 19255 0.0 18.500256 10-11 GTACTTT 11655 0.0 17.96808 14-15 AGAGTAC 17725 0.0 17.553381 10-11 GTACATG 14510 0.0 17.350555 1 TACATGG 14995 0.0 16.504316 2 ACATGGG 15025 0.0 15.985913 3 AGTACTT 11710 0.0 15.712016 12-13 >>END_MODULE