##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139478_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4717318 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.397500232123424 30.0 18.0 33.0 18.0 33.0 2 31.215768154701465 32.0 31.0 33.0 27.0 34.0 3 31.486700705782397 33.0 31.0 33.0 29.0 34.0 4 32.740819253652184 33.0 33.0 33.0 32.0 34.0 5 32.67282404959767 33.0 33.0 33.0 32.0 34.0 6 36.96206000952236 38.0 37.0 38.0 35.0 38.0 7 37.01107027340535 38.0 38.0 38.0 35.0 38.0 8 37.345634532164254 38.0 38.0 38.0 37.0 38.0 9 37.43698326040347 38.0 38.0 38.0 37.0 38.0 10-11 37.45222052021933 38.0 38.0 38.0 37.0 38.0 12-13 37.480246084745616 38.0 38.0 38.0 37.0 38.0 14-15 37.49033009858568 38.0 38.0 38.0 37.0 38.0 16-17 37.520557867839315 38.0 38.0 38.0 37.5 38.0 18-19 37.52544507281468 38.0 38.0 38.0 37.5 38.0 20-21 37.53290446014644 38.0 38.0 38.0 38.0 38.0 22-23 37.54313181153328 38.0 38.0 38.0 38.0 38.0 24-25 37.553704289856356 38.0 38.0 38.0 38.0 38.0 26-27 37.525899362157446 38.0 38.0 38.0 38.0 38.0 28-29 37.501829907475816 38.0 38.0 38.0 37.0 38.0 30-31 37.50420251878728 38.0 38.0 38.0 38.0 38.0 32-33 37.49372180231804 38.0 38.0 38.0 38.0 38.0 34-35 37.396348287328294 38.0 38.0 38.0 37.0 38.0 36-37 37.43696636453368 38.0 38.0 38.0 37.0 38.0 38-39 37.44126341598025 38.0 38.0 38.0 37.0 38.0 40-41 37.43789212062721 38.0 38.0 38.0 37.0 38.0 42-43 37.405520315806726 38.0 38.0 38.0 37.0 38.0 44-45 37.37598938590659 38.0 38.0 38.0 37.0 38.0 46-47 37.34584865208865 38.0 38.0 38.0 37.0 38.0 48-49 37.286971526047225 38.0 38.0 38.0 37.0 38.0 50-51 37.25321045150078 38.0 38.0 38.0 37.0 38.0 52-53 37.230027542095144 38.0 38.0 38.0 37.0 38.0 54-55 37.203316772402886 38.0 38.0 38.0 37.0 38.0 56-57 37.15759036115652 38.0 38.0 38.0 36.5 38.0 58-59 37.15112992122039 38.0 38.0 38.0 36.0 38.0 60-61 37.1486857628702 38.0 38.0 38.0 36.0 38.0 62-63 37.1558535864985 38.0 38.0 38.0 36.0 38.0 64-65 37.15750446620994 38.0 38.0 38.0 36.0 38.0 66-67 37.15276371984501 38.0 38.0 38.0 36.0 38.0 68-69 37.14146063972485 38.0 38.0 38.0 36.0 38.0 70-71 37.140033020501775 38.0 38.0 38.0 36.0 38.0 72-73 37.129502894689345 38.0 38.0 38.0 36.0 38.0 74-75 37.11618541022885 38.0 38.0 38.0 36.0 38.0 76-77 37.09636792607435 38.0 38.0 38.0 36.0 38.0 78-79 37.080840892967586 38.0 38.0 38.0 36.0 38.0 80-81 37.064999396858724 38.0 38.0 38.0 36.0 38.0 82-83 36.992090155852196 38.0 38.0 38.0 36.0 38.0 84-85 37.00645189676193 38.0 38.0 38.0 36.0 38.0 86-87 36.99639039166631 38.0 38.0 38.0 36.0 38.0 88-89 36.9776794141646 38.0 38.0 38.0 36.0 38.0 90-91 36.9749711438111 38.0 38.0 38.0 36.0 38.0 92-93 36.952604340224234 38.0 38.0 38.0 35.0 38.0 94-95 36.89873520635787 38.0 38.0 38.0 35.0 38.0 96-97 36.83576027627824 38.0 38.0 38.0 35.0 38.0 98-99 36.87039213689703 38.0 38.0 38.0 35.0 38.0 100 35.453037291998044 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 2.0 20 6.0 21 62.0 22 182.0 23 657.0 24 1527.0 25 3299.0 26 5973.0 27 10145.0 28 16346.0 29 24208.0 30 32131.0 31 41411.0 32 53624.0 33 71981.0 34 107487.0 35 200793.0 36 657087.0 37 3490395.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.70158467162909 22.082293370936622 14.372297987966892 23.843823969467394 2 14.508983749748245 20.540339421435917 41.50594146517273 23.44473536364311 3 18.294176916047117 25.564006523254832 30.748671320340105 25.393145240357946 4 13.16154645499837 17.95764033715768 38.54751789046234 30.333295317381616 5 13.883906066964322 37.08634864132543 35.16468467887897 13.865060612831273 6 30.385062020410754 37.94280987628987 18.39591903704605 13.276209066253324 7 27.03881739581686 32.75306010745936 22.698045796361406 17.51007670036237 8 24.448701571528566 37.15157638302103 20.719336707849674 17.68038533760073 9 25.70180767970275 17.540263344552987 21.30644997856833 35.45147899717594 10-11 24.54697775303679 26.99614484331987 28.363415398325913 20.093462005317427 12-13 25.353643744178367 24.450386851172638 28.647178333112162 21.548791071536836 14-15 22.510979755869755 25.878571255955187 26.285571589619355 25.324877398555707 16-17 22.052255116148626 29.0212468186372 26.96829003259903 21.958208032615143 18-19 22.051248188059404 28.133093846969825 28.748825073908524 21.06683289106225 20-21 22.880221976740266 27.215734333407315 28.663123925353982 21.240919764498432 22-23 22.629416183604146 27.054183031539168 28.555368255873205 21.76103252898349 24-25 22.37083730106442 27.251149188844355 28.61555751997187 21.762455990119356 26-27 22.268170689118865 27.38688715145586 28.54746230667241 21.79747985275287 28-29 22.204501711929975 27.42864554543985 28.612085279608156 21.754767463022016 30-31 22.491406672965255 27.289508603942636 28.508561480239063 21.710523242853046 32-33 22.271253322576843 27.440261695874707 28.452309986048046 21.8361749955004 34-35 22.393805757123666 27.51893891721911 28.40852514715337 21.678730178503855 36-37 22.41955586224296 27.31999007549286 28.434334040192113 21.82612002207207 38-39 22.21297786826369 27.45336489345019 28.454121484363824 21.8795357539223 40-41 22.580963874280123 27.298107560375644 28.47030499466215 21.650623570682082 42-43 22.30009352317977 27.402204622623906 28.2601696256951 22.03753222850123 44-45 22.362559500496268 27.450501595817233 28.21742368388389 21.969515219802606 46-47 22.417339420600584 27.46526138630595 28.123112753220127 21.99428643987334 48-49 22.374447970008926 27.70955720015788 27.920853073060847 21.995141756772345 50-51 22.335359311137555 27.832964803321943 27.685582791035614 22.14609309450489 52-53 22.383733843419876 27.641002317352093 27.61091078904745 22.364353050180583 54-55 22.565521722870315 27.363872814273844 27.930893852637258 22.139711610218583 56-57 22.3623095833307 27.10298559243402 28.08365233198024 22.45105249225504 58-59 22.176421767901804 26.909575701577577 28.142515142214087 22.771487388306536 60-61 22.41906054690965 27.232519166129503 28.392824568673948 21.955595718286897 62-63 21.95131932149115 27.483971144277007 28.38582138328561 22.178888150946232 64-65 21.76827555920235 27.791932231204385 28.038137282660824 22.401654926932434 66-67 21.878253298142575 28.611266600309925 27.431081234384607 22.07939886716289 68-69 21.911720487241997 28.3468995429679 27.441049802788324 22.30033016700178 70-71 22.03028426598734 27.76159116989545 27.35791424120062 22.85021032291659 72-73 22.186781869474277 27.43310045234538 27.336320976264616 23.043796701915735 74-75 22.22782081104424 27.45566656150144 27.52021847894278 22.79629414851154 76-77 22.527141830430942 27.077635185495907 27.08612855986955 23.3090944242036 78-79 22.702941334010653 27.20753089720055 26.548118275389587 23.54140949339921 80-81 22.53106736517295 27.64925983114596 26.712628290552047 23.10704451312904 82-83 22.57445779136204 27.279713582824648 26.815630348535645 23.330198277277667 84-85 22.57693268933685 27.684926298236746 26.769539658567847 22.96860135385856 86-87 23.10306123524032 27.586912217831284 26.762495313623013 22.547531233305385 88-89 22.806510389860392 27.770924746446855 27.13664110831408 22.28592375537867 90-91 22.785488897719596 27.34140293096633 26.99033422591129 22.882773945402786 92-93 22.844590665508434 26.884801281168297 27.168175367607343 23.102432685715925 94-95 22.04565588886561 27.373053086079924 27.839790355420625 22.74150066963384 96-97 22.23329996375797 27.2507351351086 27.98884269022226 22.52712221091117 98-99 23.45175367408862 29.087145623651733 28.294450989060337 19.16664971319931 100 30.11028537228932 40.352357870446006 29.53735675726467 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 935.0 1 877.0 2 874.0 3 1021.5 4 1291.5 5 1745.5 6 2198.5 7 2789.5 8 3548.5 9 4069.0 10 4296.0 11 4554.5 12 5171.0 13 6480.0 14 9214.0 15 12549.5 16 15005.0 17 16343.0 18 16450.0 19 15377.5 20 13890.0 21 12785.0 22 12883.5 23 14778.0 24 18529.0 25 24042.5 26 31358.5 27 40173.5 28 49222.5 29 59457.5 30 70014.5 31 80390.0 32 92198.0 33 104834.0 34 116468.5 35 127359.5 36 139928.5 37 150879.0 38 159281.5 39 166936.5 40 175142.0 41 181950.0 42 185967.0 43 190684.5 44 196783.0 45 201387.5 46 202892.0 47 203433.5 48 203182.5 49 201033.0 50 197310.0 51 192059.5 52 183694.0 53 172938.0 54 161262.5 55 148618.5 56 134699.5 57 120125.0 58 105391.5 59 90010.0 60 74427.5 61 59278.5 62 46323.0 63 35463.5 64 26265.5 65 19443.0 66 14439.5 67 11101.0 68 8463.5 69 6220.0 70 4527.5 71 3174.0 72 2251.5 73 1540.0 74 964.0 75 633.0 76 414.5 77 252.5 78 159.0 79 103.5 80 70.5 81 45.5 82 25.0 83 13.5 84 6.0 85 3.0 86 4.0 87 5.5 88 5.5 89 4.5 90 3.5 91 1.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.009920891489613377 3 8.691379296456165E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 5.2996939850699144E-5 22-23 1.0599867713650935E-5 24-25 1.5900934211686803E-4 26-27 2.438422154273881E-4 28-29 0.0020362028380425472 30-31 0.0026856743054108484 32-33 0.002255067732874037 34-35 4.3728794867476685E-4 36-37 0.0 38-39 2.1512389845807796E-5 40-41 1.6214584240224037E-4 42-43 0.001991204317366196 44-45 2.302603048887662E-4 46-47 3.9818674604445714E-4 48-49 0.0011936847161836094 50-51 0.0011809316651080243 52-53 0.0 54-55 0.0029669546680914064 56-57 0.052475094083249726 58-59 0.06778264470668591 60-61 0.04432185235560017 62-63 0.006900064599275883 64-65 0.0 66-67 0.0 68-69 1.0591694416906039E-4 70-71 0.001390290071546466 72-73 0.0065019295255618805 74-75 0.011173061277159588 76-77 0.012145883052741847 78-79 0.0037147583895226536 80-81 0.007132026401963751 82-83 0.044139304349951114 84-85 0.03668598829304828 86-87 0.007836781174458568 88-89 0.002063871501023888 90-91 0.0023359414513335467 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 39.0 20-21 159.0 22-23 350.0 24-25 416.0 26-27 1141.0 28-29 2843.0 30-31 9267.0 32-33 11472.0 34-35 16381.0 36-37 26193.0 38-39 16235.0 40-41 29768.0 42-43 33414.0 44-45 39097.0 46-47 39071.0 48-49 37185.0 50-51 18793.0 52-53 2689.0 54-55 2521.0 56-57 2310.0 58-59 19944.0 60-61 36958.0 62-63 35392.0 64-65 37424.0 66-67 39673.0 68-69 40534.0 70-71 40580.0 72-73 37593.0 74-75 38022.0 76-77 40137.0 78-79 41273.0 80-81 41222.0 82-83 39055.0 84-85 38418.0 86-87 39499.0 88-89 41498.0 90-91 42589.0 92-93 41546.0 94-95 48034.0 96-97 163043.0 98-99 1162942.0 100-101 2362598.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.93486475012753 #Duplication Level Percentage of deduplicated Percentage of total 1 90.76770613685055 78.90878256686423 2 6.733190879723599 11.706980769311265 3 1.4416177722305599 3.759805381507316 4 0.48607664030455805 1.6902802793229255 5 0.22590257649143225 0.9819404966994001 6 0.12159215834783295 0.6342358704386968 7 0.06204726006995819 0.37758491136084626 8 0.04020131452253117 0.27959166726348683 9 0.027252219038159605 0.21322511786009304 >10 0.09195931540026167 1.2377028448142997 >50 0.0017945768192204007 0.10080996076089044 >100 6.230276250802102E-4 0.0931387556182291 >500 3.6122576216013134E-5 0.015921378178269947 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 2.1198486088917476E-5 2.1198486088917476E-5 2 0.0 4.239697217783495E-5 0.0 4.239697217783495E-5 2.1198486088917476E-5 3 0.0 4.239697217783495E-5 0.0 4.239697217783495E-5 2.1198486088917476E-5 4 0.0 8.47939443556699E-5 0.0 4.239697217783495E-5 2.1198486088917476E-5 5 0.0 8.47939443556699E-5 0.0 4.239697217783495E-5 2.1198486088917476E-5 6 0.0 8.47939443556699E-5 0.0 4.239697217783495E-5 2.1198486088917476E-5 7 0.0 8.47939443556699E-5 0.0 4.239697217783495E-5 2.1198486088917476E-5 8 0.0 8.47939443556699E-5 0.0 4.239697217783495E-5 2.1198486088917476E-5 9 0.0 2.331833469780922E-4 0.0 6.359545826675242E-5 2.1198486088917476E-5 10-11 4.239697217783495E-5 2.331833469780922E-4 0.0 6.359545826675242E-5 2.1198486088917476E-5 12-13 6.359545826675242E-5 2.331833469780922E-4 0.0 7.419470131121116E-5 4.239697217783495E-5 14-15 6.359545826675242E-5 2.7558031915592715E-4 0.0 1.0599243044458737E-4 4.239697217783495E-5 16-17 6.359545826675242E-5 2.7558031915592715E-4 0.0 1.2719091653350483E-4 4.239697217783495E-5 18-19 6.359545826675242E-5 2.7558031915592715E-4 0.0 1.2719091653350483E-4 4.239697217783495E-5 20-21 6.359545826675242E-5 2.7558031915592715E-4 0.0 1.2719091653350483E-4 4.239697217783495E-5 22-23 6.359545826675242E-5 2.9677880524484464E-4 0.0 1.5898864566688106E-4 4.239697217783495E-5 24-25 6.359545826675242E-5 3.603742635115971E-4 0.0 1.9078637480025726E-4 4.239697217783495E-5 26-27 6.359545826675242E-5 4.02771235689432E-4 0.0 2.2258410393363346E-4 5.299621522229369E-5 28-29 6.359545826675242E-5 4.02771235689432E-4 0.0 5.723591244007718E-4 6.359545826675242E-5 30-31 6.359545826675242E-5 4.4516820786726693E-4 0.0 0.0017594743453801503 6.359545826675242E-5 32-33 6.359545826675242E-5 4.4516820786726693E-4 0.0 0.004377487377361458 1.0599243044458737E-4 34-35 6.359545826675242E-5 5.193629091784782E-4 0.0 0.00797063076943297 1.0599243044458737E-4 36-37 6.359545826675242E-5 5.935576104896893E-4 0.0 0.016397028989777667 1.0599243044458737E-4 38-39 6.359545826675242E-5 6.147560965786067E-4 0.0 0.18248716749644606 1.0599243044458737E-4 40-41 6.359545826675242E-5 6.783515548453592E-4 0.0 0.3532939691578986 1.0599243044458737E-4 42-43 6.359545826675242E-5 6.889507978898179E-4 0.0 0.372595190741858 1.0599243044458737E-4 44-45 7.419470131121116E-5 8.161417144233227E-4 0.0 0.3976094043267806 1.0599243044458737E-4 46-47 8.47939443556699E-5 9.115349018234514E-4 0.0 0.4240651149657496 1.165916734890461E-4 48-49 8.47939443556699E-5 9.115349018234514E-4 0.0 0.4509659938125859 1.2719091653350483E-4 50-51 8.47939443556699E-5 9.539318740012864E-4 0.0 0.47874660983211226 1.2719091653350483E-4 52-53 8.47939443556699E-5 9.539318740012864E-4 0.0 0.9938062263345401 1.2719091653350483E-4 54-55 8.47939443556699E-5 9.539318740012864E-4 0.0 1.6665401823663362 1.2719091653350483E-4 56-57 8.47939443556699E-5 9.539318740012864E-4 0.0 2.4053180218081547 1.2719091653350483E-4 58-59 8.47939443556699E-5 9.645311170457451E-4 0.0 3.174621681218014 1.2719091653350483E-4 60-61 8.47939443556699E-5 9.751303600902038E-4 0.0 3.377777372651155 1.2719091653350483E-4 62-63 8.47939443556699E-5 9.857296031346625E-4 0.0 3.3849848579213866 1.4838940262242232E-4 64-65 8.47939443556699E-5 0.0010387258183569563 0.0 3.3918213696850623 1.4838940262242232E-4 66-67 8.47939443556699E-5 0.0010387258183569563 0.0 3.397979529893893 1.4838940262242232E-4 68-69 8.47939443556699E-5 0.0010599243044458737 0.0 3.40381971281139 1.4838940262242232E-4 70-71 8.47939443556699E-5 0.0010599243044458737 0.0 3.408695364611841 1.4838940262242232E-4 72-73 8.47939443556699E-5 0.0010599243044458737 0.0 3.4127336762117797 1.9078637480025726E-4 74-75 8.47939443556699E-5 0.0011129205196681673 0.0 3.415722662750317 1.9078637480025726E-4 76-77 8.47939443556699E-5 0.0011977144640238373 0.0 3.419135619010633 1.9078637480025726E-4 78-79 8.47939443556699E-5 0.001208313707068296 0.0 3.4213084638347464 1.9078637480025726E-4 80-81 8.47939443556699E-5 0.001208313707068296 0.0 3.422008013875681 1.9078637480025726E-4 82-83 8.47939443556699E-5 0.001208313707068296 0.0 3.422453182083548 1.9078637480025726E-4 84-85 8.47939443556699E-5 0.0012295121931572134 0.0 3.422612170729215 1.9078637480025726E-4 86-87 8.47939443556699E-5 0.001250710679246131 0.0 3.4226439684583485 2.01385617844716E-4 88 8.47939443556699E-5 0.0013143061375128834 0.0 3.4226439684583485 2.1198486088917475E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCTCGT 4460 0.0 62.557053 94 GGTATCA 5820 0.0 47.98799 1 TATCTCG 5520 0.0 44.5979 94 GTATCAA 10770 0.0 38.033936 1 TCAACGC 12870 0.0 31.522123 4 ATCAACG 12975 0.0 31.167253 3 TATCAAC 13260 0.0 30.891817 2 TGCCGTC 2500 0.0 30.675188 88-89 CAACGCA 13255 0.0 30.606543 5 ATGCCGT 2670 0.0 30.158188 88-89 GCCGTCT 2735 0.0 30.107643 90-91 TATGCCG 2550 0.0 29.954924 86-87 AACGCAG 13695 0.0 29.74966 6 CCGTCTT 2625 0.0 29.673662 90-91 CTCGTAT 2525 0.0 28.967075 82-83 TCTCGTA 2545 0.0 28.739435 82-83 TCGTATG 2815 0.0 28.081833 84-85 CTATCTC 6905 0.0 26.8245 92-93 CGTATGC 2825 0.0 26.654448 84-85 ACGCAGA 15830 0.0 25.682606 7 >>END_MODULE