##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139477_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5274208 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.345365787621574 30.0 18.0 33.0 18.0 34.0 2 30.175004664207403 32.0 28.0 33.0 25.0 33.0 3 31.969388958493862 33.0 31.0 33.0 29.0 34.0 4 32.15096029583968 33.0 32.0 33.0 31.0 34.0 5 32.77491103877587 33.0 33.0 33.0 32.0 34.0 6 36.437414679132864 38.0 37.0 38.0 34.0 38.0 7 37.109198575406964 38.0 38.0 38.0 36.0 38.0 8 36.721281944132656 38.0 37.0 38.0 34.0 38.0 9 37.21457932641261 38.0 38.0 38.0 36.0 38.0 10-11 37.40407820472761 38.0 38.0 38.0 37.0 38.0 12-13 37.406520087944955 38.0 38.0 38.0 37.0 38.0 14-15 37.38062406715852 38.0 38.0 38.0 36.5 38.0 16-17 37.44704323378979 38.0 38.0 38.0 37.0 38.0 18-19 37.4615620961479 38.0 38.0 38.0 37.0 38.0 20-21 37.48723947143331 38.0 38.0 38.0 37.0 38.0 22-23 37.500900914571176 38.0 38.0 38.0 37.0 38.0 24-25 37.517656615915854 38.0 38.0 38.0 37.0 38.0 26-27 37.48897400844483 38.0 38.0 38.0 37.0 38.0 28-29 37.46560015362776 38.0 38.0 38.0 37.0 38.0 30-31 37.470570482317825 38.0 38.0 38.0 37.0 38.0 32-33 37.457561945624505 38.0 38.0 38.0 37.0 38.0 34-35 37.35525752860276 38.0 38.0 38.0 37.0 38.0 36-37 37.3865020690121 38.0 38.0 38.0 37.0 38.0 38-39 37.38113225400925 38.0 38.0 38.0 37.0 38.0 40-41 37.39468539905701 38.0 38.0 38.0 37.0 38.0 42-43 37.36061599491899 38.0 38.0 38.0 37.0 38.0 44-45 37.32317826641106 38.0 38.0 38.0 37.0 38.0 46-47 37.28797453126134 38.0 38.0 38.0 37.0 38.0 48-49 37.21899877266235 38.0 38.0 38.0 37.0 38.0 50-51 37.17654834629707 38.0 38.0 38.0 37.0 38.0 52-53 37.15228376017954 38.0 38.0 38.0 36.5 38.0 54-55 37.11567916850598 38.0 38.0 38.0 36.0 38.0 56-57 37.06200173001648 38.0 38.0 38.0 36.0 38.0 58-59 37.049084435004275 38.0 38.0 38.0 36.0 38.0 60-61 37.04652572663997 38.0 38.0 38.0 36.0 38.0 62-63 37.05234648238474 38.0 38.0 38.0 36.0 38.0 64-65 37.05800180667926 38.0 38.0 38.0 36.0 38.0 66-67 37.05505759602647 38.0 38.0 38.0 36.0 38.0 68-69 37.04361004159942 38.0 38.0 38.0 36.0 38.0 70-71 37.04093290228124 38.0 38.0 38.0 36.0 38.0 72-73 37.03181426075145 38.0 38.0 38.0 36.0 38.0 74-75 37.02765339810277 38.0 38.0 38.0 36.0 38.0 76-77 37.016828394436615 38.0 38.0 38.0 36.0 38.0 78-79 37.000693656599466 38.0 38.0 38.0 36.0 38.0 80-81 36.990167014034455 38.0 38.0 38.0 36.0 38.0 82-83 36.939329931331216 38.0 38.0 38.0 36.0 38.0 84-85 36.93022489864805 38.0 38.0 38.0 35.0 38.0 86-87 36.91694097867685 38.0 38.0 38.0 35.0 38.0 88-89 36.90102806814358 38.0 38.0 38.0 35.0 38.0 90-91 36.8872541982971 38.0 38.0 38.0 35.0 38.0 92-93 36.868952757829526 38.0 38.0 38.0 35.0 38.0 94-95 36.853680532091616 38.0 38.0 38.0 35.0 38.0 96-97 36.83796097946566 38.0 38.0 38.0 35.0 38.0 98-99 36.8606623782333 38.0 38.0 38.0 35.0 38.0 100 35.41164360553094 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 4.0 19 5.0 20 22.0 21 115.0 22 331.0 23 900.0 24 2006.0 25 4098.0 26 7528.0 27 12732.0 28 20423.0 29 30350.0 30 40314.0 31 51934.0 32 66712.0 33 90055.0 34 137222.0 35 260211.0 36 846604.0 37 3702641.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.046801339651374 18.556833556810805 13.50248226842779 22.89388283511003 2 14.83054591569144 19.95127628598484 43.22731652855673 21.990861269766988 3 18.66020371016427 26.05929664629059 29.9824047810457 25.298094862499433 4 12.781501980960932 18.129319131896203 38.38195232345785 30.707226563685015 5 13.906770457289511 37.177695684356785 35.28400851843537 13.631525339918335 6 30.33837497497254 37.29153268130494 18.638722629065825 13.731369714656683 7 27.200387242975626 32.46233368118967 22.396026095292413 17.94125298054229 8 24.58791917194013 36.69593614813826 20.731397017334167 17.984747662587445 9 25.659511342745677 17.597902851006257 21.15860807916563 35.583977727082434 10-11 24.748682645811463 26.733283935711295 28.237452902881344 20.280580515595897 12-13 25.6976402902578 24.092859060545205 28.50974023019191 21.69976041900509 14-15 22.723753026046754 25.407691543450696 26.3281140978892 25.54044133261335 16-17 22.143068684435654 28.749596147895573 26.973007132066083 22.134328035602692 18-19 22.162777804743385 27.58562043817764 28.940686449984526 21.31091530709445 20-21 22.966195508970994 26.64288267851998 28.928081402519634 21.46284040998939 22-23 22.68619637037696 26.67594320008358 28.82009472720374 21.817765702335716 24-25 22.54673699133356 26.842049771629405 28.87488560611031 21.736327630926723 26-27 22.440531754012184 26.943952508091506 28.894988520361238 21.720527217535075 28-29 22.394509930848606 26.90549562797542 28.9173820253433 21.78261241583267 30-31 22.55262128908746 26.914134582352077 28.912914631754 21.62032949680646 32-33 22.413669256056988 27.030274165087402 28.81893527469264 21.73712130416296 34-35 22.667938728128057 26.931726320701816 28.8269306388169 21.573404312353222 36-37 22.373807059520296 26.999354788105308 28.799722952505718 21.827115199868675 38-39 22.23862067517162 26.890289115536486 28.97179227394596 21.89929793534593 40-41 22.54237800934146 26.761773748761915 28.843694126221624 21.852154115675003 42-43 22.553416139730768 26.823817769436264 28.643559908448164 21.979206182384804 44-45 22.43046221499035 27.053074550896937 28.57441821818487 21.942045015927846 46-47 22.642702598206846 26.938150267839333 28.172462099326985 22.24668503462684 48-49 22.598040743093723 27.003177728468682 28.134063131166137 22.264718397271462 50-51 22.42930097105232 27.19405213655861 28.164144589970437 22.21250230241863 52-53 22.60614481321748 27.1148467196693 28.19902851691809 22.079979950195128 54-55 22.636031074768727 27.08035838716138 27.980294879484617 22.303315658585273 56-57 22.675289912151094 27.315518016150335 27.797827775938444 22.211364295760127 58-59 22.513037088801102 27.416367178307166 28.082952306146392 21.98764342674534 60-61 22.659519201015847 27.5977809407061 27.80707814852405 21.935621709754 62-63 22.47969557863348 27.814987636777456 27.784502252431064 21.920814532158 64-65 22.488685480080758 27.7603558380699 27.75629317382601 21.994665508023335 66-67 22.695408542635885 27.737388519024847 27.547027764127975 22.02017517421129 68-69 22.528101006296747 27.666385254742526 27.805338302010345 22.000175436950382 70-71 22.69889581958101 27.322809951682313 27.82182199148851 22.156472237248163 72-73 22.874419916264983 27.15208846890269 27.78921630630185 22.184275308530477 74-75 22.602393132647872 27.18712696054212 27.895372237028592 22.315107669781415 76-77 22.63614449167421 27.254055599033034 27.812146350421692 22.29765355887107 78-79 22.697808889506437 27.202864736959516 27.676022596189704 22.423303777344348 80-81 22.62510419711859 27.26264689078818 27.71618383199865 22.396065080094584 82-83 22.658546986869865 27.249526571191858 27.82202082711019 22.269905614828094 84-85 22.779276644203634 27.250767224469502 27.697339952510884 22.272616178815984 86-87 22.605214884068452 27.3355980017913 27.75074597556361 22.308441138576633 88-89 22.70420698112397 27.327548499857528 27.720254116445638 22.247990402572864 90-91 22.718772309425887 27.296294868900866 27.68326992638922 22.30166289528403 92-93 22.765784038957488 27.329012560069916 27.683601209150016 22.221602191822583 94-95 22.626655269642658 27.435269117026827 27.64320640169003 22.294869211640485 96-97 22.737494406686622 27.49059325170794 27.74463998771156 22.02727235389388 98-99 23.812889319581654 29.39207752909685 27.91741458597657 18.877618565344925 100 30.45803972311085 40.36467283876697 29.17728743812218 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 843.0 1 772.5 2 952.0 3 1309.5 4 1741.5 5 2591.5 6 3370.5 7 4346.0 8 5659.5 9 6581.0 10 6658.0 11 6429.5 12 6913.0 13 8572.5 14 12043.5 15 16136.5 16 19635.5 17 22333.5 18 22965.5 19 21584.0 20 19408.0 21 17387.5 22 16735.5 23 18334.0 24 22284.0 25 28641.5 26 37366.5 27 47185.0 28 57107.5 29 68375.0 30 80130.0 31 91358.5 32 103700.5 33 116983.5 34 130071.0 35 143335.0 36 157387.5 37 169028.0 38 177920.0 39 186122.5 40 194488.0 41 201428.5 42 206584.5 43 214964.0 44 224703.5 45 228594.0 46 225750.0 47 222527.5 48 221731.0 49 221033.5 50 217990.5 51 212977.5 52 205645.0 53 195044.5 54 182907.0 55 171097.0 56 157877.0 57 143231.5 58 129060.0 59 111959.0 60 93384.5 61 75662.5 62 59611.0 63 46099.5 64 34949.5 65 26655.0 66 20052.5 67 15245.5 68 11756.5 69 8894.0 70 6558.5 71 4693.0 72 3265.5 73 2155.5 74 1489.0 75 996.5 76 629.0 77 382.0 78 244.0 79 173.5 80 111.5 81 64.0 82 44.5 83 30.5 84 18.0 85 11.5 86 12.0 87 11.5 88 6.5 89 3.5 90 3.5 91 3.0 92 2.5 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.007394475151529859 3 9.100892494190596E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 6.63615300314364E-5 22-23 0.0 24-25 2.275546709578421E-4 26-27 3.1292490816839266E-4 28-29 0.0022860852630122125 30-31 0.003389691785865289 32-33 0.002663878220426599 34-35 6.486822687471561E-4 36-37 0.0 38-39 2.8900659378177267E-5 40-41 3.200049959567854E-4 42-43 0.002489245240343461 44-45 2.853298353863307E-4 46-47 6.056644118740408E-4 48-49 0.0012723977062376343 50-51 0.0012023456854987008 52-53 0.0 54-55 0.0031378555300550677 56-57 0.05392392118054737 58-59 0.06997845942984227 60-61 0.046462023575089294 62-63 0.007949311796280549 64-65 0.0 66-67 0.0 68-69 1.2001269516109904E-4 70-71 0.0014124552511003358 72-73 0.007869842406684879 74-75 0.01219273353648546 76-77 0.013299380662973556 78-79 0.0037579986760812004 80-81 0.008059854757700905 82-83 0.04642893860817403 84-85 0.03902341416704037 86-87 0.008835976264029507 88-89 0.0020931923094420638 90-91 0.0028506313230795433 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 32.0 20-21 196.0 22-23 433.0 24-25 505.0 26-27 1358.0 28-29 3358.0 30-31 9933.0 32-33 12994.0 34-35 18016.0 36-37 28754.0 38-39 34186.0 40-41 33468.0 42-43 38141.0 44-45 45246.0 46-47 45991.0 48-49 43042.0 50-51 38135.0 52-53 35178.0 54-55 37776.0 56-57 38736.0 58-59 40794.0 60-61 40669.0 62-63 40199.0 64-65 43674.0 66-67 47973.0 68-69 49946.0 70-71 55415.0 72-73 42742.0 74-75 41758.0 76-77 43546.0 78-79 45259.0 80-81 45510.0 82-83 42895.0 84-85 41644.0 86-87 43064.0 88-89 45078.0 90-91 46240.0 92-93 45210.0 94-95 51799.0 96-97 162173.0 98-99 1221138.0 100-101 2572004.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.32895151738288 #Duplication Level Percentage of deduplicated Percentage of total 1 90.68306172208864 78.2857363885403 2 6.629570924172061 11.446478137878021 3 1.5067428840103516 3.902266001486739 4 0.5566314522964887 1.9221363863341598 5 0.23232113357561007 1.0028019938456139 6 0.13332720884839966 0.6905998889172885 7 0.07230767703912824 0.43695721618118366 8 0.041478596145674895 0.2864642972535258 9 0.026518051349589577 0.20603480123647694 >10 0.1149542000583318 1.52523880152278 >50 0.002215189101945487 0.1258265051515898 >100 8.021266400778051E-4 0.12417830184555119 >500 6.883467361726223E-5 0.0452812798067869 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.688057808869123E-5 0.0 1.896019269623041E-5 0.0 3 0.0 5.688057808869123E-5 0.0 3.792038539246082E-5 0.0 4 0.0 7.584077078492164E-5 0.0 3.792038539246082E-5 0.0 5 0.0 7.584077078492164E-5 0.0 3.792038539246082E-5 0.0 6 5.688057808869123E-5 7.584077078492164E-5 0.0 3.792038539246082E-5 0.0 7 5.688057808869123E-5 7.584077078492164E-5 0.0 3.792038539246082E-5 0.0 8 5.688057808869123E-5 9.480096348115205E-5 0.0 3.792038539246082E-5 0.0 9 5.688057808869123E-5 1.706417342660737E-4 0.0 5.688057808869123E-5 0.0 10-11 6.636067443680643E-5 1.706417342660737E-4 0.0 6.636067443680643E-5 0.0 12-13 7.584077078492164E-5 1.801218306141889E-4 0.0 8.532086713303685E-5 0.0 14-15 7.584077078492164E-5 3.033630831396866E-4 0.0 1.1376115617738247E-4 0.0 16-17 1.1376115617738247E-4 3.3180337218403216E-4 0.0 1.1376115617738247E-4 0.0 18-19 1.2324125252549767E-4 3.602436612283778E-4 0.0 1.1376115617738247E-4 0.0 20-21 1.6116163791795847E-4 3.981640466208386E-4 0.0 1.1376115617738247E-4 0.0 22-23 1.896019269623041E-4 3.981640466208386E-4 0.0 1.2324125252549767E-4 0.0 24-25 1.896019269623041E-4 3.981640466208386E-4 0.0 1.3272134887361287E-4 0.0 26-27 2.2752231235476493E-4 3.981640466208386E-4 0.0 2.0856211965853452E-4 0.0 28-29 2.4648250505099534E-4 3.981640466208386E-4 0.0 8.152882859379076E-4 0.0 30-31 2.4648250505099534E-4 4.929650101019907E-4 0.0 0.0022467828345033034 0.0 32-33 2.4648250505099534E-4 4.929650101019907E-4 0.0 0.005479495689210589 1.896019269623041E-5 34-35 2.4648250505099534E-4 5.024451064501059E-4 0.0 0.009897220587432275 1.896019269623041E-5 36-37 2.6544269774722573E-4 5.308853954944515E-4 0.0 0.016201484658928886 1.896019269623041E-5 38-39 2.7492279409534095E-4 5.593256845387971E-4 0.0 0.03258309114847196 1.896019269623041E-5 40-41 2.8440289044345617E-4 6.162062626274883E-4 0.0 0.05053839363180216 1.896019269623041E-5 42-43 2.8440289044345617E-4 6.541266480199492E-4 0.0 0.062037750502065905 2.8440289044345613E-5 44-45 3.3180337218403216E-4 6.825669370642948E-4 0.0 0.07566064895430746 3.792038539246082E-5 46-47 3.412834685321474E-4 7.204873224567555E-4 0.0 0.09011779588518315 4.7400481740576026E-5 48-49 3.6024366122837777E-4 7.299674188048708E-4 0.0 0.10411041809500118 5.688057808869123E-5 50-51 3.886839502727234E-4 8.152882859379076E-4 0.0 0.11842536358065514 5.688057808869123E-5 52-53 3.981640466208386E-4 8.342484786341381E-4 0.0 0.15070509164598742 6.636067443680643E-5 54-55 3.981640466208386E-4 8.342484786341381E-4 0.0 0.1904266953445901 7.584077078492164E-5 56-57 3.981640466208386E-4 8.532086713303685E-4 0.0 0.2467195074596982 7.584077078492164E-5 58-59 3.981640466208386E-4 8.532086713303685E-4 0.0 0.28484845497181754 7.584077078492164E-5 60-61 3.981640466208386E-4 8.532086713303685E-4 0.0 0.3013817430029305 7.584077078492164E-5 62-63 4.6452472105764503E-4 8.721688640265988E-4 0.0 0.3147865992391654 7.584077078492164E-5 64-65 4.929650101019907E-4 9.480096348115205E-4 0.0 0.32079698032387044 7.584077078492164E-5 66-67 5.214052991463364E-4 9.764499238558662E-4 0.0 0.32698748323918964 7.584077078492164E-5 68-69 5.308853954944515E-4 9.859300202039814E-4 0.0 0.3330642249983315 7.584077078492164E-5 70-71 5.308853954944515E-4 9.859300202039814E-4 0.0 0.33823087750805425 7.584077078492164E-5 72-73 5.782858772350275E-4 9.954101165520965E-4 0.0 0.34196603546921167 9.480096348115205E-5 74-75 5.877659735831427E-4 0.001023850405596442 0.0 0.3447721439882538 9.480096348115205E-5 76-77 5.877659735831427E-4 0.0010807309836851334 0.0 0.3474550112547704 9.480096348115205E-5 78-79 5.877659735831427E-4 0.0010996911763813638 0.0 0.3495975130294444 9.480096348115205E-5 80-81 5.877659735831427E-4 0.0011091712727294791 0.0 0.3502042391957238 9.480096348115205E-5 82-83 5.877659735831427E-4 0.0011186513690775942 0.0 0.35048864208616726 9.480096348115205E-5 84-85 5.877659735831427E-4 0.0011281314654257094 0.0 0.3505739629533003 1.0428105982926726E-4 86-87 5.877659735831427E-4 0.0011755319471662853 0.0 0.35063084353138896 1.1376115617738247E-4 88 6.067261662793731E-4 0.0012324125252549767 0.0 0.35063084353138896 1.1376115617738247E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7860 0.0 49.944283 1 GTATCAA 14670 0.0 37.445942 1 TCAACGC 17250 0.0 31.202019 4 TATCAAC 17580 0.0 30.885054 2 ATCAACG 17670 0.0 30.484707 3 CAACGCA 17760 0.0 30.306015 5 AACGCAG 18290 0.0 29.474274 6 ACGCAGA 20600 0.0 26.18977 7 CGCAGAG 21135 0.0 25.567017 8 TGGTATC 3630 0.0 25.046297 2 GTGGTAT 3920 0.0 24.277184 1 CTTATAC 5370 0.0 23.892908 1 GCAGAGT 24000 0.0 22.603455 9 TATACAC 7195 0.0 21.196444 3 GAGTACT 13945 0.0 20.806421 12-13 GTACATG 17285 0.0 20.081171 1 CAGAGTA 23410 0.0 19.670847 10-11 TACATGG 17270 0.0 19.4098 2 GTACTTT 15155 0.0 19.075212 14-15 ACATGGG 17315 0.0 18.916082 3 >>END_MODULE