##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139476_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5384370 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.172434472370956 30.0 18.0 33.0 18.0 34.0 2 29.96534914948267 32.0 27.0 33.0 25.0 33.0 3 31.894278624983052 33.0 31.0 33.0 29.0 34.0 4 32.03271747669644 33.0 32.0 33.0 31.0 33.0 5 32.74307189141905 33.0 33.0 33.0 32.0 34.0 6 36.48030651682555 38.0 37.0 38.0 34.0 38.0 7 37.11311184038244 38.0 38.0 38.0 36.0 38.0 8 36.77315600525224 38.0 37.0 38.0 34.0 38.0 9 37.254766481501086 38.0 38.0 38.0 36.0 38.0 10-11 37.41543133179927 38.0 38.0 38.0 37.0 38.0 12-13 37.4350324179059 38.0 38.0 38.0 37.0 38.0 14-15 37.39241712586616 38.0 38.0 38.0 36.5 38.0 16-17 37.45503995824953 38.0 38.0 38.0 37.0 38.0 18-19 37.47414553606086 38.0 38.0 38.0 37.0 38.0 20-21 37.498339153836014 38.0 38.0 38.0 37.0 38.0 22-23 37.50981626067506 38.0 38.0 38.0 37.0 38.0 24-25 37.52287302037303 38.0 38.0 38.0 37.0 38.0 26-27 37.49739637153945 38.0 38.0 38.0 37.0 38.0 28-29 37.47766521044983 38.0 38.0 38.0 37.0 38.0 30-31 37.48095347105913 38.0 38.0 38.0 37.0 38.0 32-33 37.47142783573507 38.0 38.0 38.0 37.0 38.0 34-35 37.370511332969855 38.0 38.0 38.0 37.0 38.0 36-37 37.41200205408717 38.0 38.0 38.0 37.0 38.0 38-39 37.41479205589803 38.0 38.0 38.0 37.0 38.0 40-41 37.40758642283186 38.0 38.0 38.0 37.0 38.0 42-43 37.371288472102044 38.0 38.0 38.0 37.0 38.0 44-45 37.33411997814254 38.0 38.0 38.0 37.0 38.0 46-47 37.29756415589579 38.0 38.0 38.0 37.0 38.0 48-49 37.23157052537219 38.0 38.0 38.0 37.0 38.0 50-51 37.18647486010853 38.0 38.0 38.0 37.0 38.0 52-53 37.15513525601752 38.0 38.0 38.0 36.5 38.0 54-55 37.11637468729704 38.0 38.0 38.0 36.0 38.0 56-57 37.060386141385784 38.0 38.0 38.0 36.0 38.0 58-59 37.048798315830496 38.0 38.0 38.0 36.0 38.0 60-61 37.0445523083139 38.0 38.0 38.0 36.0 38.0 62-63 37.046949718270454 38.0 38.0 38.0 36.0 38.0 64-65 37.05069351856307 38.0 38.0 38.0 36.0 38.0 66-67 37.047058421388115 38.0 38.0 38.0 36.0 38.0 68-69 37.03430421391208 38.0 38.0 38.0 36.0 38.0 70-71 37.02607689740071 38.0 38.0 38.0 36.0 38.0 72-73 37.01119703454761 38.0 38.0 38.0 36.0 38.0 74-75 37.007061810428866 38.0 38.0 38.0 36.0 38.0 76-77 36.9912691436609 38.0 38.0 38.0 36.0 38.0 78-79 36.97360729150434 38.0 38.0 38.0 36.0 38.0 80-81 36.96205884417863 38.0 38.0 38.0 36.0 38.0 82-83 36.903494912313704 38.0 38.0 38.0 35.0 38.0 84-85 36.89268617239554 38.0 38.0 38.0 35.0 38.0 86-87 36.87990958109557 38.0 38.0 38.0 35.0 38.0 88-89 36.85936276149329 38.0 38.0 38.0 35.0 38.0 90-91 36.846288648681295 38.0 38.0 38.0 35.0 38.0 92-93 36.81821464199379 38.0 38.0 38.0 35.0 38.0 94-95 36.801478824330346 38.0 38.0 38.0 35.0 38.0 96-97 36.783920887794466 38.0 38.0 38.0 35.0 38.0 98-99 36.8032953104984 38.0 38.0 38.0 35.0 38.0 100 35.308028220019374 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 23.0 21 88.0 22 270.0 23 784.0 24 1928.0 25 3936.0 26 7255.0 27 12144.0 28 19660.0 29 29369.0 30 39963.0 31 51362.0 32 66385.0 33 90667.0 34 139469.0 35 268380.0 36 906630.0 37 3746052.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.42486864758551 18.25946210977329 13.72708413426269 22.58858510837851 2 14.99506227550627 20.118575966570944 42.97824373767078 21.908118020252008 3 18.809553746556897 26.047760560903082 29.948310992833445 25.19437469970657 4 12.930426400860268 18.0181711137979 38.59500740105156 30.45639508429027 5 14.125886593974782 37.10292940492574 35.18173899639141 13.589445004708073 6 30.522865256288107 37.12322890143137 18.84389445747599 13.510011384804535 7 27.457269838439778 32.49529657137232 22.654498112128252 17.39293547805964 8 24.82357267424044 36.53407919589478 20.8757570523571 17.766591077507677 9 26.04276823472384 17.60677665167884 21.31064544227087 35.03980967132645 10-11 24.860271489515025 26.6767514119572 28.366716997531743 20.09626010099603 12-13 25.782292078739015 24.194622583514878 28.636154276173443 21.386931061572664 14-15 22.895343373505163 25.47435447415389 26.535722842226665 25.094579310114273 16-17 22.24278792133527 28.687005164949657 27.13690738192212 21.933299531792947 18-19 22.20972927194825 27.71299149204085 29.014322938431054 21.062956297579845 20-21 23.12596310123193 26.777339074223033 28.965506930428642 21.131190894116394 22-23 22.911003102053886 26.58523237358153 28.84522856415572 21.658535960208866 24-25 22.601763834328448 26.79095627415748 28.902088963325447 21.705190928188628 26-27 22.486933416411066 26.91583855982744 28.8890275994743 21.708200424287195 28-29 22.434033004892555 26.899599781041545 28.969205041619666 21.69716217244623 30-31 22.69968942100291 26.815949479844363 28.82925261975449 21.655108479398237 32-33 22.448867520419242 27.016172792221425 28.781256328277177 21.75370335908216 34-35 22.661024772639117 27.029387374022452 28.743482533245206 21.56610532009323 36-37 22.617443309497762 26.887048475430873 28.761936807837053 21.73357140723431 38-39 22.480033080648642 27.03746356982221 28.82505165068976 21.657451698839388 40-41 22.714030518071173 26.91093200389657 28.702762916730002 21.672274561302252 42-43 22.588290379700805 26.9984365232768 28.525299394518573 21.887973702503817 44-45 22.673103859993077 27.062848098962505 28.435876618977158 21.828171422067257 46-47 22.715259274551673 27.123551274374165 28.168682561178187 21.99250688989597 48-49 22.7354728053 27.164011180247332 28.097922715099138 22.00259329935353 50-51 22.664837724385798 27.367701199510986 27.992472453018348 21.974988623084872 52-53 22.884645874749744 27.25430025667206 27.87519223276155 21.985861635816654 54-55 22.846885384032763 27.194510195529155 27.88824196372161 22.07036245671647 56-57 22.796071699860857 27.283620939074748 27.885103559536383 22.035203801528013 58-59 22.797345415888284 27.20611214895396 27.97496103788872 22.021581397269042 60-61 22.810299228136124 27.20929299727709 28.02227918895167 21.958128585635112 62-63 22.827092103918584 27.293157166785043 28.006137149350057 21.873613579946316 64-65 22.831850931666473 27.22471146280964 28.00537862739517 21.938058978128712 66-67 23.014141500762413 27.25702050343421 27.805283031003036 21.92355496480034 68-69 22.821568491488403 27.25097944041882 27.979102381860415 21.948349686232362 70-71 23.018359472536172 27.09156991124245 27.947854456936135 21.94221615928525 72-73 23.14025994454605 27.05697489063741 27.855695661276727 21.947069503539815 74-75 22.803526340086698 27.130495270018855 27.9331502565478 22.132828133346646 76-77 22.767555135388744 27.185187414942813 27.831254239421 22.216003210247443 78-79 22.828400814693044 27.15658348978498 27.690499047556266 22.324516647965716 80-81 22.748984498407125 27.220052156472196 27.720248869551263 22.31071447556942 82-83 22.7744181398176 27.17361932947527 27.80313674322421 22.24882578748292 84-85 22.796105211407145 27.214522909973702 27.690695942191557 22.298675936427593 86-87 22.671789294955012 27.30762486376488 27.7693110473273 22.251274793952806 88-89 22.757789870606143 27.313517497441875 27.68314665910518 22.245545972846802 90-91 22.763127450965946 27.319817927893276 27.682203512639774 22.234851108501005 92-93 22.82845320042166 27.30870026570064 27.655563719649756 22.207282814227945 94-95 22.678759841944395 27.379425158897075 27.673902484004483 22.267912515154052 96-97 22.80122009960028 27.455650394655922 27.7083681001222 22.034761405621595 98-99 23.828433546914063 29.35121193802556 27.964183592388014 18.856170922672362 100 30.46393667856248 40.314038446280705 29.222024875156816 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 818.0 1 777.0 2 959.0 3 1320.5 4 1715.0 5 2462.0 6 3190.5 7 4160.5 8 5425.5 9 6229.0 10 6270.0 11 6162.5 12 6733.0 13 8247.5 14 11398.5 15 15249.5 16 18602.5 17 21132.5 18 21772.5 19 20436.0 20 18509.0 21 16832.5 22 16547.0 23 18716.5 24 23018.5 25 29536.5 26 38182.0 27 48038.0 28 58823.0 29 70788.0 30 82398.0 31 94252.5 32 108100.0 33 122533.5 34 135688.5 35 148495.0 36 163302.0 37 175907.0 38 186365.0 39 195503.5 40 203629.5 41 211592.0 42 216840.0 43 221892.0 44 227573.0 45 232469.5 46 234614.5 47 235189.5 48 234720.0 49 232188.5 50 228699.0 51 222936.5 52 214068.5 53 202395.0 54 188934.0 55 176090.0 56 161278.5 57 145577.0 58 130139.5 59 112271.0 60 94335.5 61 77202.0 62 61760.0 63 48229.0 64 36550.0 65 27438.0 66 20518.5 67 15846.5 68 12255.0 69 9258.5 70 6951.5 71 5007.5 72 3523.0 73 2429.0 74 1624.0 75 1071.5 76 723.0 77 455.5 78 292.5 79 194.0 80 123.5 81 80.5 82 50.0 83 33.5 84 27.0 85 20.0 86 12.0 87 5.5 88 4.0 89 4.5 90 2.5 91 0.5 92 0.0 93 0.0 94 0.5 95 0.5 96 0.0 97 0.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.005775977505260597 3 9.843305716360504E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 8.357626942834853E-5 22-23 9.28675148318708E-6 24-25 1.1145038465707134E-4 26-27 1.5790689029502393E-4 28-29 0.0015982113413351069 30-31 0.0025580160362490404 32-33 0.0020231430786364015 34-35 6.07838100358185E-4 36-37 9.393697862041334E-6 38-39 1.8911869647290794E-5 40-41 1.2381545515942335E-4 42-43 0.0019477115253095038 44-45 1.451821731390331E-4 46-47 4.789718175915009E-4 48-49 0.0012535965636055648 50-51 0.0012355770049952187 52-53 0.0 54-55 0.0030793756687385937 56-57 0.05221510579945311 58-59 0.06780483347178282 60-61 0.04456143281408521 62-63 0.007621444031321297 64-65 0.0 66-67 0.0 68-69 2.0585541647313548E-4 70-71 0.001774878565985767 72-73 0.00784225286214538 74-75 0.012278487742498734 76-77 0.013430809099322248 78-79 0.004142878494867065 80-81 0.00826856196621308 82-83 0.046577519052841757 84-85 0.03917769502190858 86-87 0.008952690960778345 88-89 0.0023406752108184312 90-91 0.00268945061155528 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 30.0 20-21 221.0 22-23 471.0 24-25 505.0 26-27 1402.0 28-29 3784.0 30-31 11701.0 32-33 14752.0 34-35 21254.0 36-37 33150.0 38-39 38051.0 40-41 37631.0 42-43 43181.0 44-45 50263.0 46-47 50236.0 48-49 48657.0 50-51 42892.0 52-53 39635.0 54-55 43060.0 56-57 44184.0 58-59 46500.0 60-61 45618.0 62-63 44140.0 64-65 46577.0 66-67 48941.0 68-69 51047.0 70-71 50556.0 72-73 47175.0 74-75 47390.0 76-77 49696.0 78-79 51184.0 80-81 51176.0 82-83 48307.0 84-85 46932.0 86-87 48629.0 88-89 50877.0 90-91 51817.0 92-93 50244.0 94-95 57159.0 96-97 165885.0 98-99 1213466.0 100-101 2545994.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.96255019898234 #Duplication Level Percentage of deduplicated Percentage of total 1 92.0741677561663 81.91152771037467 2 5.888171762727955 10.47653552043832 3 1.2042659655881753 3.2140371424969194 4 0.4174732061115796 1.4855792422172602 5 0.16070419130800936 0.7148327343212821 6 0.08918522921254327 0.4760487258497176 7 0.04932439068228605 0.30716165074749624 8 0.032710560310588194 0.23280118909340333 9 0.0170642975268309 0.13662750828069575 >10 0.06497437214806344 0.8775965470101534 >50 0.0013560842873649314 0.08008013790758428 >100 6.021839303053196E-4 0.08717189126255528 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.857227493652925E-5 0.0 2 0.0 1.857227493652925E-5 0.0 1.857227493652925E-5 0.0 3 0.0 1.857227493652925E-5 0.0 3.71445498730585E-5 0.0 4 0.0 1.857227493652925E-5 0.0 5.571682480958775E-5 0.0 5 0.0 1.857227493652925E-5 0.0 5.571682480958775E-5 0.0 6 1.6715047442876325E-4 1.857227493652925E-5 0.0 5.571682480958775E-5 1.857227493652925E-5 7 1.6715047442876325E-4 1.857227493652925E-5 0.0 5.571682480958775E-5 1.857227493652925E-5 8 1.6715047442876325E-4 1.857227493652925E-5 0.0 5.571682480958775E-5 3.71445498730585E-5 9 1.6715047442876325E-4 5.571682480958775E-5 0.0 7.4289099746117E-5 3.71445498730585E-5 10-11 1.6715047442876325E-4 5.571682480958775E-5 0.0 1.114336496191755E-4 3.71445498730585E-5 12-13 1.6715047442876325E-4 5.571682480958775E-5 0.0 1.48578199492234E-4 3.71445498730585E-5 14-15 1.6715047442876325E-4 1.114336496191755E-4 0.0 1.5786433696049864E-4 3.71445498730585E-5 16-17 3.5287322379405574E-4 1.3000592455570474E-4 0.0 1.9500888683355715E-4 3.71445498730585E-5 18-19 3.71445498730585E-4 1.48578199492234E-4 0.0 2.1358116177008638E-4 4.643068734132313E-5 20-21 3.71445498730585E-4 1.9500888683355715E-4 0.0 2.22867299238351E-4 5.571682480958775E-5 22-23 3.807316361988496E-4 2.0429502430182177E-4 0.0 2.785841240479387E-4 6.500296227785237E-5 24-25 4.178761860719082E-4 2.2286729923835102E-4 0.0 3.157286739209973E-4 9.286137468264626E-5 26-27 4.2716232354017276E-4 2.4143957417488025E-4 0.0 4.828791483497605E-4 9.286137468264626E-5 28-29 4.2716232354017276E-4 2.4143957417488025E-4 0.0 9.471860217629918E-4 9.286137468264626E-5 30-31 4.2716232354017276E-4 2.7858412404793877E-4 0.0 0.0025629739412410366 1.114336496191755E-4 32-33 4.2716232354017276E-4 2.7858412404793877E-4 0.0 0.005878125017411508 1.6715047442876325E-4 34-35 4.643068734132312E-4 3.2501481138926187E-4 0.0 0.01064191353863126 1.6715047442876325E-4 36-37 4.921652858180252E-4 3.71445498730585E-4 0.0 0.01770866415198064 1.6715047442876325E-4 38-39 5.014514232862898E-4 3.71445498730585E-4 0.0 0.0347022957189049 1.7643661189702787E-4 40-41 5.20023698222819E-4 4.828791483497605E-4 0.0 0.053070275631132334 1.857227493652925E-4 42-43 5.20023698222819E-4 4.828791483497605E-4 0.0 0.06513296820240808 1.857227493652925E-4 44-45 5.20023698222819E-4 5.107375607545544E-4 0.0 0.07903431599240023 1.857227493652925E-4 46-47 5.20023698222819E-4 5.385959731593482E-4 0.0 0.09457002397680694 1.857227493652925E-4 48-49 5.20023698222819E-4 5.571682480958775E-4 0.0 0.10933498255134769 1.857227493652925E-4 50-51 5.478821106276129E-4 5.94312797968936E-4 0.0 0.12331061944108596 2.0429502430182177E-4 52-53 5.571682480958775E-4 5.94312797968936E-4 0.0 0.16051088613895403 2.1358116177008638E-4 54-55 5.571682480958775E-4 6.314573478419946E-4 0.0 0.20621725475775254 2.22867299238351E-4 56-57 5.571682480958775E-4 6.500296227785237E-4 0.0 0.27435893149987833 2.22867299238351E-4 58-59 5.571682480958775E-4 6.500296227785237E-4 0.0 0.32047389016728045 2.321534367066156E-4 60-61 5.94312797968936E-4 6.68601897715053E-4 0.0 0.3361396040762429 2.4143957417488025E-4 62-63 6.500296227785237E-4 6.778880351833176E-4 0.0 0.34757083929967664 2.4143957417488025E-4 64-65 6.68601897715053E-4 7.243187225246408E-4 0.0 0.35436829192644637 2.4143957417488025E-4 66-67 6.871741726515823E-4 7.243187225246408E-4 0.0 0.360952163391446 2.692979865796741E-4 68-69 6.964603101198469E-4 7.243187225246408E-4 0.0 0.36722959231999286 2.878702615162034E-4 70-71 7.336048599929053E-4 7.4289099746117E-4 0.0 0.3722998233776653 3.343009488575265E-4 72-73 8.264662346755517E-4 7.614632723976992E-4 0.0 0.3767107386750911 3.71445498730585E-4 74-75 8.357523721438162E-4 7.614632723976992E-4 0.0 0.3802951877378412 3.807316361988496E-4 76-77 8.357523721438162E-4 7.893216848024931E-4 0.0 0.38369391405122605 3.9001777366711425E-4 78-79 8.357523721438162E-4 8.264662346755517E-4 0.0 0.3857647227066491 3.993039111353789E-4 80-81 8.357523721438162E-4 8.357523721438162E-4 0.0 0.3865168998415785 4.2716232354017276E-4 82-83 8.357523721438162E-4 8.357523721438162E-4 0.0 0.3868790592028408 4.643068734132313E-4 84-85 8.357523721438162E-4 8.357523721438162E-4 0.0 0.3871390710519522 4.735930108814959E-4 86-87 8.357523721438162E-4 8.543246470803455E-4 0.0 0.38729693538891274 4.828791483497605E-4 88 8.357523721438162E-4 9.100414718899333E-4 0.0 0.387306221526381 4.828791483497605E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7935 0.0 50.30501 1 GTATCAA 14325 0.0 36.24251 1 TCAACGC 16585 0.0 30.666557 4 ATCAACG 16710 0.0 30.462631 3 TATCAAC 17150 0.0 29.732393 2 CAACGCA 17155 0.0 29.672155 5 AACGCAG 17645 0.0 28.895887 6 ACGCAGA 20065 0.0 25.410812 7 CGCAGAG 20580 0.0 24.734005 8 GTGGTAT 3990 0.0 21.84476 1 TGGTATC 3630 0.0 21.691261 2 GCAGAGT 23795 0.0 21.374441 9 GAGTACT 12765 0.0 20.614498 12-13 GTACATG 18375 0.0 20.302813 1 TACATGG 18350 0.0 19.73387 2 CAGAGTA 23245 0.0 19.38968 10-11 ACATGGG 18705 0.0 18.95274 3 GTACTTT 14155 0.0 18.471378 14-15 AGAGTAC 21410 0.0 17.85594 10-11 CATGGGG 13200 0.0 17.09639 4 >>END_MODULE