##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139473_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3652537 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.647358260847188 28.0 18.0 33.0 18.0 33.0 2 30.55183972126771 32.0 27.0 33.0 27.0 33.0 3 28.79770006436622 31.0 28.0 33.0 18.0 33.0 4 31.96291810322524 33.0 32.0 33.0 31.0 33.0 5 32.71764009509007 33.0 33.0 33.0 32.0 34.0 6 37.04269279133928 38.0 37.0 38.0 36.0 38.0 7 37.023670944332665 38.0 38.0 38.0 35.0 38.0 8 37.32371992398708 38.0 38.0 38.0 36.0 38.0 9 37.435446102257146 38.0 38.0 38.0 37.0 38.0 10-11 37.403525960175074 38.0 38.0 38.0 37.0 38.0 12-13 37.51924018839508 38.0 38.0 38.0 37.5 38.0 14-15 37.49663370966536 38.0 38.0 38.0 37.0 38.0 16-17 37.544997764567476 38.0 38.0 38.0 37.5 38.0 18-19 37.533563246587235 38.0 38.0 38.0 37.5 38.0 20-21 37.54136807432761 38.0 38.0 38.0 38.0 38.0 22-23 37.54876432577608 38.0 38.0 38.0 38.0 38.0 24-25 37.55575584807606 38.0 38.0 38.0 38.0 38.0 26-27 37.51969311660153 38.0 38.0 38.0 37.5 38.0 28-29 37.491900347877504 38.0 38.0 38.0 37.0 38.0 30-31 37.50050412554576 38.0 38.0 38.0 38.0 38.0 32-33 37.48945304553447 38.0 38.0 38.0 37.5 38.0 34-35 37.38530155895526 38.0 38.0 38.0 37.0 38.0 36-37 37.42636388061981 38.0 38.0 38.0 37.0 38.0 38-39 37.43630144329199 38.0 38.0 38.0 37.0 38.0 40-41 37.432049626397465 38.0 38.0 38.0 37.0 38.0 42-43 37.39299382048668 38.0 38.0 38.0 37.0 38.0 44-45 37.36170796741804 38.0 38.0 38.0 37.0 38.0 46-47 37.32651632479775 38.0 38.0 38.0 37.0 38.0 48-49 37.264172787708304 38.0 38.0 38.0 37.0 38.0 50-51 37.23349423849237 38.0 38.0 38.0 37.0 38.0 52-53 37.21748612951177 38.0 38.0 38.0 37.0 38.0 54-55 37.19304067319911 38.0 38.0 38.0 37.0 38.0 56-57 37.14979964598005 38.0 38.0 38.0 37.0 38.0 58-59 37.1485653481828 38.0 38.0 38.0 37.0 38.0 60-61 37.1519369185165 38.0 38.0 38.0 36.5 38.0 62-63 37.16466791798625 38.0 38.0 38.0 36.5 38.0 64-65 37.17429614453662 38.0 38.0 38.0 37.0 38.0 66-67 37.1753139277874 38.0 38.0 38.0 36.0 38.0 68-69 37.169675694413016 38.0 38.0 38.0 36.0 38.0 70-71 37.16665914244716 38.0 38.0 38.0 36.0 38.0 72-73 37.15796348570419 38.0 38.0 38.0 36.0 38.0 74-75 37.16018047799842 38.0 38.0 38.0 36.0 38.0 76-77 37.1461420097352 38.0 38.0 38.0 36.0 38.0 78-79 37.13678612106186 38.0 38.0 38.0 36.0 38.0 80-81 37.12788993820591 38.0 38.0 38.0 36.0 38.0 82-83 37.082975968742495 38.0 38.0 38.0 36.0 38.0 84-85 37.07552683380787 38.0 38.0 38.0 36.0 38.0 86-87 37.06958408584792 38.0 38.0 38.0 36.0 38.0 88-89 37.05455444299466 38.0 38.0 38.0 36.0 38.0 90-91 37.04930842376915 38.0 38.0 38.0 36.0 38.0 92-93 37.03618359205538 38.0 38.0 38.0 36.0 38.0 94-95 37.019396765086086 38.0 38.0 38.0 36.0 38.0 96-97 37.007238828990964 38.0 38.0 38.0 36.0 38.0 98-99 37.027156468977864 38.0 38.0 38.0 36.0 38.0 100 35.68486207820032 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 0.0 20 5.0 21 38.0 22 139.0 23 493.0 24 1239.0 25 2552.0 26 4719.0 27 8091.0 28 12901.0 29 19052.0 30 25974.0 31 33627.0 32 43043.0 33 56492.0 34 84596.0 35 161777.0 36 569746.0 37 2628052.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.37080007676856 18.020488225033723 12.128665637062678 22.48004606113504 2 14.725158342396332 20.130622209225532 42.20371106606079 22.940508382317347 3 19.19630720202381 25.566821765276803 29.956427283666187 25.2804437490332 4 12.947083082252146 17.672209754480242 39.153169427168024 30.227537736099592 5 13.754056427080682 37.47354236247299 34.984724316276605 13.787676894169723 6 30.113781188253537 37.383276336420415 18.830062501762473 13.672879973563582 7 26.924463735754077 32.756711294095034 22.781398244562613 17.537426725588272 8 24.250952146412207 36.941610721534104 20.943086955724198 17.864350176329495 9 25.75519426634145 17.63437303988981 21.53544235143956 35.07499034232918 10-11 24.41500250373918 26.955264245098682 28.468240020566526 20.16149323059561 12-13 25.351105272855552 24.476918372079464 28.787442810298703 21.38453354476628 14-15 22.475254870792547 25.83407094849416 26.633953331615807 25.05672084909749 16-17 21.858806632212076 28.955257674323352 27.33067454210594 21.855261151358633 18-19 21.858697119289964 27.95244784652421 29.264795948678955 20.92405908550687 20-21 22.683462112778706 27.028748544147046 29.262630670844995 21.025158672229253 22-23 22.4928484048 26.845683798734616 29.113618367662085 21.547849428803296 24-25 22.174068227038656 27.035274509033474 29.190033067670228 21.60062419625764 26-27 22.03532765935772 27.153845542951487 29.204374578785497 21.606452218905297 28-29 22.00523199998466 27.149543456705878 29.268011726320296 21.577212816989167 30-31 22.245880150095157 27.045590807391456 29.145354537356727 21.56317450515666 32-33 21.993984692580035 27.28935673086686 29.03726091516152 21.679397661391583 34-35 22.185524163361865 27.277790835024884 29.047683076457638 21.489001925155616 36-37 22.186133621525663 27.150063927456102 29.011748762469036 21.6520536885492 38-39 22.020017172528796 27.319784136664264 29.09336480377623 21.566833887030704 40-41 22.282472469511795 27.142454627953633 28.95362357786991 21.621449324664656 42-43 22.113435138257902 27.265907660111278 28.77505279525316 21.845604406377664 44-45 22.188528720570204 27.34155854792146 28.713617274429375 21.756295457078963 46-47 22.29486808228036 27.36300024308827 28.44603454723446 21.89609712739691 48-49 22.23354435366142 27.480917799394746 28.372883231298978 21.912654615644854 50-51 22.191611464325273 27.64171887463617 28.26032689484949 21.90634276618907 52-53 22.363139971325175 27.593418007619242 28.108363814378713 21.93507820667687 54-55 22.3490030930182 27.47828176201928 28.176602366592736 21.996112778369785 56-57 22.249222333952552 27.598086748546617 28.19297846170969 21.959712455791138 58-59 22.277302437166195 27.549966102677192 28.204866605130295 21.967864855026313 60-61 22.319463242559372 27.545966783033133 28.28239445947448 21.85217551493302 62-63 22.253242605875993 27.62964282204972 28.256869042939964 21.86024552913432 64-65 22.257060331276087 27.557214431185486 28.243384932281216 21.942340305257208 66-67 22.329969749159233 27.618637744501314 28.06130895423949 21.990083552099964 68-69 22.206887514869642 27.654823841628364 28.179703404447114 21.95858523905488 70-71 22.25853066279703 27.572124750273154 28.19555077538721 21.973793811542606 72-73 22.417319647539315 27.644667161358498 27.98859449158978 21.949418699512403 74-75 22.09476964545779 27.734535326406878 28.065778321845258 22.104916706290073 76-77 22.368042467626058 27.45907643029674 28.00989168285391 22.16298941922329 78-79 22.303938079718648 27.58456081340058 27.91292493619382 22.198576170686955 80-81 22.330027231065554 27.6259294219621 27.855219824269394 22.188823522702954 82-83 22.39422378606806 27.532837625628943 27.931977793027368 22.140960795275635 84-85 22.43100562888026 27.548460637912363 27.891197587603173 22.129336145604206 86-87 22.341431831882517 27.581372634805984 27.95676704276432 22.120428490547177 88-89 22.37979030317796 27.59580256808785 27.890243597650972 22.134163531083217 90-91 22.434934353343007 27.595313530851517 27.873332500330932 22.096419615474545 92-93 22.49729640837908 27.593025895492108 27.834892330022292 22.074785366106525 94-95 22.388895257816817 27.664230039408196 27.875320822187206 22.071553880587786 96-97 22.496676774905357 27.71555949147077 27.9194268343881 21.868336899235775 98-99 23.476026031566903 29.619815480774914 28.154518086272716 18.749640401385463 100 29.942699964292093 40.53215943581503 29.525140599892875 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 587.0 1 555.0 2 709.0 3 998.0 4 1287.5 5 1811.5 6 2332.0 7 2963.0 8 3999.0 9 4760.0 10 4780.0 11 4716.0 12 5173.0 13 6277.0 14 8412.5 15 10887.0 16 13028.5 17 14791.0 18 15235.5 19 14304.0 20 12938.5 21 11785.0 22 11564.5 23 13067.0 24 16205.5 25 20937.0 26 27159.0 27 34245.5 28 41763.0 29 50473.0 30 59473.0 31 67805.5 32 77167.5 33 87375.0 34 96198.5 35 104770.0 36 114832.5 37 123289.0 38 129609.5 39 134823.5 40 140122.0 41 144564.0 42 146901.5 43 149231.5 44 151972.0 45 154341.5 46 154943.0 47 154476.5 48 153314.0 49 151232.0 50 148819.5 51 144768.5 52 138626.5 53 131349.0 54 122690.5 55 113680.5 56 103908.5 57 93567.5 58 83871.5 59 72411.5 60 60248.0 61 49132.0 62 39066.0 63 30399.0 64 23017.0 65 17076.5 66 12572.5 67 9589.0 68 7359.5 69 5523.0 70 4091.5 71 2924.0 72 2018.0 73 1323.0 74 837.0 75 541.0 76 354.0 77 215.0 78 142.5 79 99.5 80 67.0 81 44.0 82 34.0 83 26.5 84 17.0 85 10.5 86 9.0 87 10.0 88 5.5 89 1.5 90 1.0 91 1.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.008897924921773551 3 6.023210716277481E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 5.4757015742642024E-5 22-23 0.0 24-25 1.505998529050164E-4 26-27 3.01233358910784E-4 28-29 0.002259962531190907 30-31 0.0033589168548802594 32-33 0.0022394434969171245 34-35 6.061709859563959E-4 36-37 0.0 38-39 1.3918403637045892E-5 40-41 1.9615307393583805E-4 42-43 0.0024825953842063206 44-45 2.2749815726492618E-4 46-47 6.313941210893385E-4 48-49 0.0011296257086591023 50-51 0.0011100962818639628 52-53 0.0 54-55 0.0033368778391268945 56-57 0.055110076621845 58-59 0.07116991179244266 60-61 0.04595707122585161 62-63 0.007967700569207002 64-65 0.0 66-67 0.0 68-69 1.578725100545055E-4 70-71 0.001403410510811125 72-73 0.007972203262515474 74-75 0.01260093142833265 76-77 0.014219981471331303 78-79 0.004496345433480054 80-81 0.007345608885570507 82-83 0.047167812671074415 84-85 0.03976721712506816 86-87 0.008905053626578768 88-89 0.0023943405479299787 90-91 0.0027569616374090006 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 17.0 20-21 117.0 22-23 301.0 24-25 306.0 26-27 831.0 28-29 2283.0 30-31 7224.0 32-33 9227.0 34-35 13065.0 36-37 20947.0 38-39 23787.0 40-41 23555.0 42-43 26742.0 44-45 31456.0 46-47 32444.0 48-49 30051.0 50-51 27058.0 52-53 25128.0 54-55 27222.0 56-57 28013.0 58-59 29666.0 60-61 29103.0 62-63 28365.0 64-65 29439.0 66-67 31207.0 68-69 31781.0 70-71 31290.0 72-73 29430.0 74-75 29703.0 76-77 31164.0 78-79 32131.0 80-81 31835.0 82-83 29640.0 84-85 29003.0 86-87 30274.0 88-89 31458.0 90-91 32189.0 92-93 31525.0 94-95 36280.0 96-97 110041.0 98-99 834919.0 100-101 1792320.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 90.97357142685195 #Duplication Level Percentage of deduplicated Percentage of total 1 93.51486991610271 85.07381697785338 2 4.9333031376360434 8.97600410724091 3 0.9365247839356577 2.5559701297316297 4 0.30500781958718987 1.1099060264385439 5 0.12009842339226481 0.5462891249364255 6 0.06506499129655181 0.35515167798626146 7 0.035064604365276725 0.2232966602845165 8 0.02102231471480408 0.15299800394119917 9 0.015100111845418096 0.12363399931703367 >10 0.052419432989434626 0.7408145641769512 >50 0.0010092128990754287 0.05909491867542761 >100 5.152512355814737E-4 0.08302380941769859 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 2.7378230528534004E-5 0.0 3 0.0 0.0 0.0 5.475646105706801E-5 0.0 4 0.0 8.2134691585602E-5 0.0 5.475646105706801E-5 0.0 5 0.0 8.2134691585602E-5 0.0 5.475646105706801E-5 0.0 6 5.475646105706801E-5 8.2134691585602E-5 0.0 5.475646105706801E-5 0.0 7 5.475646105706801E-5 8.2134691585602E-5 0.0 5.475646105706801E-5 0.0 8 8.2134691585602E-5 1.3689115264267E-4 0.0 5.475646105706801E-5 0.0 9 8.2134691585602E-5 2.1902584422827203E-4 0.0 5.475646105706801E-5 0.0 10-11 8.2134691585602E-5 2.1902584422827203E-4 0.0 1.09512922114136E-4 0.0 12-13 8.2134691585602E-5 2.1902584422827203E-4 0.0 1.3689115264267E-4 0.0 14-15 8.2134691585602E-5 3.14849651078141E-4 0.0 1.5058026790693702E-4 2.7378230528534004E-5 16-17 8.2134691585602E-5 3.28538766342408E-4 0.0 1.64269383171204E-4 5.475646105706801E-5 18-19 9.582380684986902E-5 3.8329522739947606E-4 0.0 1.7795849843547102E-4 5.475646105706801E-5 20-21 1.0951292211413602E-4 4.3805168845654406E-4 0.0 1.9164761369973803E-4 5.475646105706801E-5 22-23 1.0951292211413602E-4 4.791190342493451E-4 0.0 2.1902584422827203E-4 6.8445576321335E-5 24-25 1.0951292211413602E-4 5.20186380042146E-4 0.0 2.7378230528534E-4 1.2320203737840302E-4 26-27 1.0951292211413602E-4 5.4756461057068E-4 0.0 2.8747142054960705E-4 1.64269383171204E-4 28-29 1.0951292211413602E-4 5.4756461057068E-4 0.0 5.33875495306413E-4 1.7795849843547102E-4 30-31 1.0951292211413602E-4 6.57077532684816E-4 0.0 0.0017932740996189772 1.9164761369973803E-4 32-33 1.0951292211413602E-4 6.57077532684816E-4 0.0 0.004681677420379315 1.9164761369973803E-4 34-35 1.0951292211413602E-4 7.939686853274861E-4 0.0 0.0081724018127674 2.1902584422827203E-4 36-37 1.0951292211413602E-4 9.445489532344231E-4 0.0 0.013962897569552341 2.1902584422827203E-4 38-39 1.0951292211413602E-4 0.001012994529555758 0.0 0.030006540659273266 2.1902584422827203E-4 40-41 1.0951292211413602E-4 0.001122507451669894 0.0 0.04765181023491343 2.1902584422827203E-4 42-43 1.0951292211413602E-4 0.001163574797462695 0.0 0.05727525826569313 2.3271495949253905E-4 44-45 1.0951292211413602E-4 0.00123202037378403 0.0 0.0683634416297494 2.4640407475680603E-4 46-47 1.0951292211413602E-4 0.0013278441806338992 0.0 0.08091636032708224 2.7378230528534006E-4 48-49 1.0951292211413602E-4 0.0013415332958981662 0.0 0.09312705114280842 3.28538766342408E-4 50-51 1.3689115264267E-4 0.0013689115264267002 0.0 0.1051597834600991 3.28538766342408E-4 52-53 1.3689115264267E-4 0.0013689115264267002 0.0 0.14077886137772183 3.42227881606675E-4 54-55 1.3689115264267E-4 0.0013689115264267002 0.0 0.18633623697720242 3.5591699687094203E-4 56-57 1.3689115264267E-4 0.0013962897569552342 0.0 0.2502644052613293 3.5591699687094203E-4 58-59 1.3689115264267E-4 0.0014510462180123021 0.0 0.28960692253083264 3.696061121352091E-4 60-61 1.64269383171204E-4 0.0014510462180123021 0.0 0.30495242074207596 3.9698434266374305E-4 62-63 1.64269383171204E-4 0.0014510462180123021 0.0 0.31732738094097335 4.3805168845654406E-4 64-65 1.64269383171204E-4 0.001478424448540836 0.0 0.32347379369462925 4.5174080372081105E-4 66-67 1.64269383171204E-4 0.001478424448540836 0.0 0.3294696261803782 4.6542991898507804E-4 68-69 1.64269383171204E-4 0.0015605591401264382 0.0 0.33608146885301915 4.6542991898507804E-4 70-71 1.64269383171204E-4 0.0015879373706549722 0.0 0.34140653469081905 4.6542991898507804E-4 72-73 1.9164761369973803E-4 0.0015879373706549722 0.0 0.34554064750062763 4.928081495136121E-4 74-75 1.9164761369973803E-4 0.0016016264859192392 0.0 0.3487712787029946 4.928081495136121E-4 76-77 2.0533672896400502E-4 0.0016563829469763071 0.0 0.3520019099053616 4.928081495136121E-4 78-79 2.1902584422827203E-4 0.001697450292769108 0.0 0.35405527719500174 4.928081495136121E-4 80-81 2.1902584422827203E-4 0.001697450292769108 0.0 0.3547397329582151 5.06497264777879E-4 82-83 2.1902584422827203E-4 0.001724828523297642 0.0 0.35524623022299295 5.20186380042146E-4 84-85 2.1902584422827203E-4 0.001724828523297642 0.0 0.355506323413014 5.20186380042146E-4 86-87 2.1902584422827203E-4 0.001724828523297642 0.0 0.3555747689893354 5.33875495306413E-4 88 2.1902584422827203E-4 0.0017522067538261763 0.0 0.3555884581045996 5.4756461057068E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4995 0.0 51.522213 1 GTATCAA 9740 0.0 38.543457 1 TCAACGC 11085 0.0 33.134792 4 ATCAACG 11210 0.0 32.765316 3 TATCAAC 11475 0.0 32.19763 2 CAACGCA 11495 0.0 31.952953 5 AACGCAG 11825 0.0 31.097153 6 ACGCAGA 13640 0.0 26.928091 7 GTGGTAT 2540 0.0 26.584026 1 CGCAGAG 14095 0.0 26.05883 8 TGGTATC 2490 0.0 25.412317 2 GCAGAGT 16215 0.0 22.547068 9 GTACATG 12260 0.0 21.025948 1 GAGTACT 9200 0.0 20.815773 12-13 TACATGG 12420 0.0 20.071226 2 ACATGGG 12170 0.0 20.062319 3 CAGAGTA 15925 0.0 19.558002 10-11 GTACTTT 10285 0.0 18.49637 14-15 GTATAGG 1140 0.0 18.253603 1 AGAGTAC 14670 0.0 18.206411 10-11 >>END_MODULE