##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139472_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2634538 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.818579576381133 28.0 18.0 33.0 18.0 33.0 2 30.754895545253095 32.0 29.0 33.0 27.0 33.0 3 28.877802483775145 31.0 28.0 33.0 18.0 33.0 4 32.009342055419204 33.0 32.0 33.0 31.0 33.0 5 32.74881819886447 33.0 33.0 33.0 32.0 34.0 6 37.102352670563114 38.0 38.0 38.0 36.0 38.0 7 37.09987443718785 38.0 38.0 38.0 36.0 38.0 8 37.396324896433455 38.0 38.0 38.0 37.0 38.0 9 37.50248051081442 38.0 38.0 38.0 37.0 38.0 10-11 37.46826198749079 38.0 38.0 38.0 37.0 38.0 12-13 37.57357248215816 38.0 38.0 38.0 38.0 38.0 14-15 37.55011182226258 38.0 38.0 38.0 37.5 38.0 16-17 37.59305103968893 38.0 38.0 38.0 38.0 38.0 18-19 37.583785278481464 38.0 38.0 38.0 38.0 38.0 20-21 37.588343537578474 38.0 38.0 38.0 38.0 38.0 22-23 37.596306510812994 38.0 38.0 38.0 38.0 38.0 24-25 37.601421620302304 38.0 38.0 38.0 38.0 38.0 26-27 37.56674861966407 38.0 38.0 38.0 38.0 38.0 28-29 37.54420375590041 38.0 38.0 38.0 38.0 38.0 30-31 37.55056995447249 38.0 38.0 38.0 38.0 38.0 32-33 37.54211251078117 38.0 38.0 38.0 38.0 38.0 34-35 37.43705661431473 38.0 38.0 38.0 37.0 38.0 36-37 37.487029391191626 38.0 38.0 38.0 37.0 38.0 38-39 37.49326577759062 38.0 38.0 38.0 38.0 38.0 40-41 37.492814440858524 38.0 38.0 38.0 38.0 38.0 42-43 37.464576097705105 38.0 38.0 38.0 38.0 38.0 44-45 37.43742215494024 38.0 38.0 38.0 37.5 38.0 46-47 37.414303933512876 38.0 38.0 38.0 38.0 38.0 48-49 37.36057932003326 38.0 38.0 38.0 37.0 38.0 50-51 37.335317681379806 38.0 38.0 38.0 37.0 38.0 52-53 37.317444397795114 38.0 38.0 38.0 37.0 38.0 54-55 37.29136334841276 38.0 38.0 38.0 37.0 38.0 56-57 37.24813499403072 38.0 38.0 38.0 37.0 38.0 58-59 37.24410971398288 38.0 38.0 38.0 37.0 38.0 60-61 37.24161571261381 38.0 38.0 38.0 37.0 38.0 62-63 37.24650430291288 38.0 38.0 38.0 37.0 38.0 64-65 37.25643516360974 38.0 38.0 38.0 37.0 38.0 66-67 37.253070386415686 38.0 38.0 38.0 37.0 38.0 68-69 37.24603796214513 38.0 38.0 38.0 37.0 38.0 70-71 37.24391499030544 38.0 38.0 38.0 37.0 38.0 72-73 37.230769046523136 38.0 38.0 38.0 37.0 38.0 74-75 37.230694574870384 38.0 38.0 38.0 37.0 38.0 76-77 37.21861326176923 38.0 38.0 38.0 36.5 38.0 78-79 37.20843901423721 38.0 38.0 38.0 36.0 38.0 80-81 37.20236899097641 38.0 38.0 38.0 36.0 38.0 82-83 37.153929998368554 38.0 38.0 38.0 36.0 38.0 84-85 37.14594471688879 38.0 38.0 38.0 36.0 38.0 86-87 37.13675499844773 38.0 38.0 38.0 36.0 38.0 88-89 37.124872589957434 38.0 38.0 38.0 36.0 38.0 90-91 37.11818076096572 38.0 38.0 38.0 36.0 38.0 92-93 37.10245941231568 38.0 38.0 38.0 36.0 38.0 94-95 37.08460708013408 38.0 38.0 38.0 36.0 38.0 96-97 37.07264915186653 38.0 38.0 38.0 36.0 38.0 98-99 37.08340026645719 38.0 38.0 38.0 36.0 38.0 100 35.737634553046405 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 2.0 20 6.0 21 25.0 22 98.0 23 338.0 24 832.0 25 1636.0 26 3020.0 27 4960.0 28 8029.0 29 11818.0 30 15887.0 31 20446.0 32 26180.0 33 35156.0 34 53537.0 35 105744.0 36 399096.0 37 1947728.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.23448209894866 18.558130495745363 12.81340409589841 22.39398330940757 2 14.761765210538544 20.54962016359614 42.211038108152025 22.4775765177133 3 19.38056174265026 25.83134814895791 30.147169347234936 24.640920761156888 4 13.125489174952119 18.058688088765468 39.559991163536075 29.255831572746345 5 14.106230390299931 37.86728451060489 34.89283510049959 13.133649998595578 6 30.330706939888515 37.871004327893544 18.81430444351154 12.983984288706408 7 27.351247163639318 33.05095618282978 22.758411531737252 16.83938512179365 8 24.63312353057728 37.269646518668544 21.00425197890484 17.092977971849333 9 26.242020422556063 18.03124494693187 21.52255917356288 34.20417545694919 10-11 24.7352097407591 27.2930775718551 28.56574852972324 19.40596415766256 12-13 25.624094243468875 24.74029602154154 28.750676589216024 20.884933145773566 14-15 22.754900479704602 26.258057389948448 26.478968988111006 24.508073142235943 16-17 22.217310966856427 29.32233279611074 27.175296010154344 21.28506022687849 18-19 22.187837108441784 28.428760564470885 28.828640923000542 20.55476140408679 20-21 23.03251987464851 27.48829764297904 28.76842086883643 20.710761613536015 22-23 22.88758925592322 27.348838586420765 28.614696447300147 21.14887571035587 24-25 22.57817151809632 27.549484696344102 28.640071732713647 21.232272052845932 26-27 22.4904011052824 27.71826309077386 28.62604346335487 21.165292340588866 28-29 22.464102089356672 27.73305987969939 28.626702557456124 21.176135473487815 30-31 22.701047659944788 27.60240741469431 28.56676857556228 21.129776349798625 32-33 22.46751663224636 27.777185054221505 28.51184261665435 21.243455696877785 34-35 22.654850211894807 27.848914673240223 28.46471754142023 21.031517573444734 36-37 22.680624481912744 27.630309440718147 28.457214605535874 21.23185147183323 38-39 22.511215423257255 27.833994155093833 28.55911104259146 21.095679379057447 40-41 22.742720170281817 27.656105445535406 28.463115172728447 21.138059211454333 42-43 22.62474578078424 27.790452804212396 28.27335171081496 21.311449704188405 44-45 22.63089415913723 27.903572077468 28.199872796501886 21.265660966892888 46-47 22.758593435649825 27.868410421975693 27.97333352493725 21.399662617437233 48-49 22.7028802074257 27.915921675442036 27.898253421587306 21.482944695544962 50-51 22.67956704783216 28.115094181958728 27.80951389556717 21.39582487464194 52-53 22.87350141153959 27.998668308594066 27.739074585173825 21.388755694692524 54-55 22.87896555330192 27.85787890148526 27.787631396315387 21.475524148897428 56-57 22.805452389650615 28.092537817279055 27.68754977330392 21.414460019766405 58-59 22.887670726124675 28.07727302507744 27.734625247821874 21.300431000976015 60-61 23.01155779044068 28.141499472016896 27.623808104189802 21.22313463335263 62-63 22.97773483125428 28.287410095022402 27.576174464743904 21.158680608979413 64-65 23.11566337382478 28.178145021567623 27.516412741857017 21.18977886275058 66-67 23.461025477189562 28.356738900466432 27.186705062701577 20.99553055964243 68-69 22.917721352267243 28.3001873365122 27.50601599676284 21.276075314457717 70-71 22.85034741079577 28.209622243249143 27.58789969038168 21.352130655573408 72-73 23.111654959477203 28.311604572192927 27.352705552479357 21.224034915850517 74-75 22.777852087062794 28.26409896530937 27.53196418984658 21.42608475778125 76-77 22.69713507845835 27.819735075956352 27.674017121975425 21.80911272360988 78-79 22.613076047346024 28.027489726753203 27.553541855392442 21.805892370508325 80-81 22.70627325871559 28.04883923865314 27.52946726936123 21.71542023327004 82-83 22.65058492215096 27.78573064383611 27.71837225805351 21.845312175959425 84-85 22.6790963572485 27.7730993970075 27.71956813251249 21.828236113231508 86-87 22.601370768240614 27.81237065585031 27.737533959948223 21.848724615960847 88-89 22.620263317195054 27.825101963013676 27.693799448544382 21.860835271246888 90-91 22.61095966788732 27.78360704541068 27.737766211748323 21.867667074953673 92-93 22.66575496536387 27.787173129521232 27.7111014544618 21.835970450653104 94-95 22.52593771839256 27.871980322199125 27.72156305480452 21.8805189046038 96-97 22.63525305410122 27.94451210831844 27.784465077532257 21.635769760048085 98-99 23.691763518945045 29.86302901134111 27.978576486090883 18.466630983622967 100 30.109897315096006 40.676159543011394 29.213943141892596 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 454.0 1 426.0 2 400.5 3 456.0 4 650.5 5 966.0 6 1198.0 7 1396.5 8 1671.0 9 1902.0 10 2032.0 11 2153.0 12 2488.5 13 3165.0 14 4445.5 15 6021.5 16 7387.0 17 8527.5 18 9006.0 19 8650.0 20 8048.5 21 7612.5 22 7805.0 23 9211.5 24 11783.5 25 15405.5 26 20066.0 27 25618.0 28 31501.5 29 38108.0 30 44533.0 31 50601.0 32 57714.0 33 65031.5 34 72075.5 35 79437.5 36 87295.0 37 93473.0 38 97902.5 39 102048.5 40 106478.0 41 109390.5 42 110854.0 43 113116.5 44 115208.5 45 116633.5 46 116637.5 47 115987.5 48 114800.5 49 112442.0 50 109906.0 51 106448.0 52 100953.0 53 94102.0 54 86610.5 55 79525.0 56 72423.0 57 64728.0 58 57341.5 59 49055.5 60 40345.0 61 32670.5 62 25848.5 63 19896.0 64 14906.0 65 11024.0 66 8136.5 67 6196.5 68 4886.5 69 3786.0 70 2792.5 71 1955.5 72 1350.0 73 900.0 74 610.0 75 411.5 76 259.0 77 158.5 78 91.0 79 53.5 80 41.0 81 30.0 82 21.5 83 16.0 84 12.0 85 8.5 86 4.5 87 3.0 88 2.5 89 2.5 90 2.0 91 1.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.009337500540891799 3 8.350610239821934E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 1.8978843334392984E-5 22-23 0.0 24-25 1.898092189578411E-5 26-27 9.491630185586048E-5 28-29 9.494827692614448E-4 30-31 0.002033954494165022 32-33 0.001295507560810744 34-35 2.866146378299221E-4 36-37 0.0 38-39 0.0 40-41 5.8368961098643935E-5 42-43 0.001274019930767797 44-45 3.954101579683351E-5 46-47 3.792146464671665E-4 48-49 0.0010274477633469494 50-51 9.555646187358165E-4 52-53 0.0 54-55 0.002913977523520035 56-57 0.047901289560271586 58-59 0.0655582949874852 60-61 0.04170241057787383 62-63 0.006544553172241481 64-65 0.0 66-67 0.0 68-69 4.427187268471941E-5 70-71 0.0014556888319552813 72-73 0.006909649200508279 74-75 0.011679444589737752 76-77 0.012647367309196163 78-79 0.0037040458026362487 80-81 0.006217363292165054 82-83 0.04580578060784535 84-85 0.037010872642500976 86-87 0.008164230881498402 88-89 0.001967133433399834 90-91 0.0028003247367568607 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 10.0 20-21 69.0 22-23 194.0 24-25 255.0 26-27 653.0 28-29 1723.0 30-31 5587.0 32-33 7113.0 34-35 10043.0 36-37 16265.0 38-39 18284.0 40-41 18515.0 42-43 21002.0 44-45 23689.0 46-47 23379.0 48-49 23039.0 50-51 21043.0 52-53 19134.0 54-55 21438.0 56-57 22465.0 58-59 22509.0 60-61 22318.0 62-63 22701.0 64-65 23780.0 66-67 24202.0 68-69 25721.0 70-71 26371.0 72-73 23826.0 74-75 24301.0 76-77 25636.0 78-79 25743.0 80-81 25781.0 82-83 24315.0 84-85 24051.0 86-87 24895.0 88-89 26004.0 90-91 26102.0 92-93 25366.0 94-95 28366.0 96-97 80170.0 98-99 577858.0 100-101 1250622.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 91.64829493808857 #Duplication Level Percentage of deduplicated Percentage of total 1 93.83951497352747 86.00231545141024 2 4.719770692859177 8.65117872998609 3 0.8767212897496166 2.4105003402442278 4 0.28257680596187806 1.035907298218289 5 0.11752355268790468 0.538541660945654 6 0.05450235405319734 0.2997028691452534 7 0.03496927116839157 0.22434118544675236 8 0.022205647575287736 0.16280877906169774 9 0.014092606912288972 0.11624070552696049 >10 0.0373151078756434 0.5026098910019778 >50 7.557610025904927E-4 0.048856031201265276 >100 5.1936626604886E-5 0.006997057811565735 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 3.7957319271917886E-5 0.0 0.0 0.0 5 0.0 3.7957319271917886E-5 0.0 0.0 0.0 6 3.7957319271917886E-5 7.591463854383577E-5 0.0 0.0 0.0 7 3.7957319271917886E-5 7.591463854383577E-5 0.0 0.0 3.7957319271917886E-5 8 3.7957319271917886E-5 1.1387195781575365E-4 0.0 0.0 7.591463854383577E-5 9 3.7957319271917886E-5 1.5182927708767155E-4 0.0 0.0 7.591463854383577E-5 10-11 1.1387195781575365E-4 1.5182927708767155E-4 0.0 0.0 7.591463854383577E-5 12-13 1.1387195781575365E-4 1.5182927708767155E-4 0.0 0.0 7.591463854383577E-5 14-15 1.1387195781575365E-4 1.5182927708767155E-4 0.0 3.7957319271917886E-5 7.591463854383577E-5 16-17 1.5182927708767155E-4 1.5182927708767155E-4 0.0 3.7957319271917886E-5 7.591463854383577E-5 18-19 1.8978659635958943E-4 1.8978659635958943E-4 0.0 3.7957319271917886E-5 7.591463854383577E-5 20-21 1.8978659635958943E-4 1.8978659635958943E-4 0.0 3.7957319271917886E-5 7.591463854383577E-5 22-23 1.8978659635958943E-4 2.277439156315073E-4 0.0 3.7957319271917886E-5 7.591463854383577E-5 24-25 1.8978659635958943E-4 2.846798945393841E-4 0.0 9.489329817979471E-5 7.591463854383577E-5 26-27 1.8978659635958943E-4 3.036585541753431E-4 0.0 2.0876525599554835E-4 7.591463854383577E-5 28-29 1.8978659635958943E-4 3.036585541753431E-4 0.0 6.073171083506862E-4 9.489329817979471E-5 30-31 1.8978659635958943E-4 3.036585541753431E-4 0.0 0.0016891007076003457 1.1387195781575365E-4 32-33 2.277439156315073E-4 3.036585541753431E-4 0.0 0.004763643568625695 1.1387195781575365E-4 34-35 2.4672257526746626E-4 3.41615873447261E-4 0.0 0.00916669260416817 1.1387195781575365E-4 36-37 2.657012349034252E-4 3.7957319271917885E-4 0.0 0.014860290494955852 1.1387195781575365E-4 38-39 2.657012349034252E-4 3.7957319271917885E-4 0.0 0.02884756264665759 1.1387195781575365E-4 40-41 3.036585541753431E-4 3.7957319271917885E-4 0.0 0.04365091716270557 1.1387195781575365E-4 42-43 3.036585541753431E-4 4.365091716270557E-4 0.0 0.05296943904396141 1.1387195781575365E-4 44-45 3.036585541753431E-4 4.934451505349325E-4 0.0 0.06477416533752788 1.1387195781575365E-4 46-47 3.41615873447261E-4 5.314024698068504E-4 0.0 0.0761803397787392 1.1387195781575365E-4 48-49 3.7957319271917885E-4 5.314024698068504E-4 0.0 0.0872259196868673 1.1387195781575365E-4 50-51 3.7957319271917885E-4 7.591463854383577E-4 0.0 0.09876494474553034 1.1387195781575365E-4 52-53 3.7957319271917885E-4 7.591463854383577E-4 0.0 0.12598034266349545 1.328506174517126E-4 54-55 3.7957319271917885E-4 7.591463854383577E-4 0.0 0.15636517674066575 1.5182927708767155E-4 56-57 3.7957319271917885E-4 7.591463854383577E-4 0.0 0.19396190147950038 1.5182927708767155E-4 58-59 3.7957319271917885E-4 7.591463854383577E-4 0.0 0.22772493697187135 1.5182927708767155E-4 60-61 4.744664908989736E-4 7.591463854383577E-4 0.0 0.24106693469595047 1.5182927708767155E-4 62-63 4.934451505349325E-4 7.591463854383577E-4 0.0 0.2549403348898365 1.5182927708767155E-4 64-65 4.934451505349325E-4 7.971037047102756E-4 0.0 0.2632719664700225 1.5182927708767155E-4 66-67 4.934451505349325E-4 8.730183432541114E-4 0.0 0.270426921152779 1.5182927708767155E-4 68-69 5.314024698068504E-4 8.730183432541114E-4 0.0 0.27760085449517147 1.5182927708767155E-4 70-71 5.314024698068504E-4 8.730183432541114E-4 0.0 0.28346526032268277 1.5182927708767155E-4 72-73 5.693597890787682E-4 8.730183432541114E-4 0.0 0.28838073316839613 1.8978659635958943E-4 74-75 5.693597890787682E-4 8.730183432541114E-4 0.0 0.29206259313777216 1.8978659635958943E-4 76-77 5.693597890787682E-4 8.730183432541114E-4 0.0 0.29610504764023143 1.8978659635958943E-4 78-79 5.693597890787682E-4 8.730183432541114E-4 0.0 0.2984204441158184 1.8978659635958943E-4 80-81 5.693597890787682E-4 8.730183432541114E-4 0.0 0.29904673988380504 2.0876525599554835E-4 82-83 5.693597890787682E-4 8.919970028900703E-4 0.0 0.29959712101324787 2.657012349034252E-4 84-85 5.693597890787682E-4 9.489329817979471E-4 0.0 0.2998248649288794 2.657012349034252E-4 86-87 5.693597890787682E-4 9.86890301069865E-4 0.0 0.2999007795674232 2.657012349034252E-4 88 5.693597890787682E-4 0.0010248476203417829 0.0 0.2999007795674232 2.657012349034252E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 3465 0.0 44.8974 1 GTATCAA 6140 0.0 36.39197 1 TCAACGC 6860 0.0 31.583693 4 ATCAACG 6920 0.0 31.310438 3 TATCAAC 7125 0.0 30.710052 2 CAACGCA 7100 0.0 30.516071 5 AACGCAG 7375 0.0 29.43534 6 ACGCAGA 8415 0.0 25.847553 7 CGCAGAG 8620 0.0 25.23285 8 TGGTATC 1755 0.0 23.782427 2 GTGGTAT 2005 0.0 22.078674 1 GCAGAGT 10210 0.0 21.385918 9 GAGTACT 5345 0.0 19.124403 12-13 GTACATG 8385 0.0 18.804708 1 TACATGG 8375 0.0 18.726482 2 CAGAGTA 9885 0.0 18.656288 10-11 GTACTTT 5825 0.0 17.512304 14-15 ACATGGG 8530 0.0 17.44447 3 AGAGTAC 9140 0.0 17.317596 10-11 CATGGGG 5950 0.0 16.365108 4 >>END_MODULE