##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139470_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4215916 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.874627957483025 28.0 18.0 33.0 18.0 33.0 2 30.04345674818948 32.0 27.0 33.0 27.0 33.0 3 27.353200585590415 29.0 25.0 31.0 18.0 33.0 4 31.14802761724854 32.0 31.0 33.0 29.0 33.0 5 32.601592868548614 33.0 33.0 33.0 32.0 33.0 6 37.03700429515199 38.0 37.0 38.0 35.0 38.0 7 37.06160132222748 38.0 38.0 38.0 35.0 38.0 8 37.320015863693676 38.0 38.0 38.0 36.0 38.0 9 37.48829198684224 38.0 38.0 38.0 37.0 38.0 10-11 37.385375325314826 38.0 38.0 38.0 37.0 38.0 12-13 37.58340322719903 38.0 38.0 38.0 37.5 38.0 14-15 37.5553305616146 38.0 38.0 38.0 37.5 38.0 16-17 37.61123976379036 38.0 38.0 38.0 38.0 38.0 18-19 37.60327660702917 38.0 38.0 38.0 38.0 38.0 20-21 37.61119684252661 38.0 38.0 38.0 38.0 38.0 22-23 37.61891570146962 38.0 38.0 38.0 38.0 38.0 24-25 37.622029499867324 38.0 38.0 38.0 38.0 38.0 26-27 37.59202956068712 38.0 38.0 38.0 38.0 38.0 28-29 37.571265632015965 38.0 38.0 38.0 38.0 38.0 30-31 37.572023990881526 38.0 38.0 38.0 38.0 38.0 32-33 37.487340904467004 38.0 38.0 38.0 38.0 38.0 34-35 37.52947239384653 38.0 38.0 38.0 38.0 38.0 36-37 37.51796568028195 38.0 38.0 38.0 38.0 38.0 38-39 37.51332482268364 38.0 38.0 38.0 38.0 38.0 40-41 37.501690783558644 38.0 38.0 38.0 38.0 38.0 42-43 37.46682316318835 38.0 38.0 38.0 38.0 38.0 44-45 37.43054805338862 38.0 38.0 38.0 37.5 38.0 46-47 37.404670525971056 38.0 38.0 38.0 38.0 38.0 48-49 37.28951297585717 38.0 38.0 38.0 37.0 38.0 50-51 37.28530303724351 38.0 38.0 38.0 37.0 38.0 52-53 37.29626175364372 38.0 38.0 38.0 37.0 38.0 54-55 37.28021894112922 38.0 38.0 38.0 37.0 38.0 56-57 37.23399493431067 38.0 38.0 38.0 37.0 38.0 58-59 37.220048338459605 38.0 38.0 38.0 37.0 38.0 60-61 37.23363074338151 38.0 38.0 38.0 37.0 38.0 62-63 37.23919842479789 38.0 38.0 38.0 37.0 38.0 64-65 37.24581878590271 38.0 38.0 38.0 37.0 38.0 66-67 37.187158932917264 38.0 38.0 38.0 36.5 38.0 68-69 37.20563114046013 38.0 38.0 38.0 36.5 38.0 70-71 37.22295891312187 38.0 38.0 38.0 37.0 38.0 72-73 37.23575605964259 38.0 38.0 38.0 37.0 38.0 74-75 37.22473097333851 38.0 38.0 38.0 36.5 38.0 76-77 37.198607311072095 38.0 38.0 38.0 36.0 38.0 78-79 37.19873070452218 38.0 38.0 38.0 36.0 38.0 80-81 37.19726928692724 38.0 38.0 38.0 36.0 38.0 82-83 37.14680967492946 38.0 38.0 38.0 36.0 38.0 84-85 37.144531526643874 38.0 38.0 38.0 36.0 38.0 86-87 37.14233214794419 38.0 38.0 38.0 36.0 38.0 88-89 37.125985614252656 38.0 38.0 38.0 36.0 38.0 90-91 37.101790482656156 38.0 38.0 38.0 36.0 38.0 92-93 37.092157754556155 38.0 38.0 38.0 36.0 38.0 94-95 37.08363473031101 38.0 38.0 38.0 36.0 38.0 96-97 37.06388076218843 38.0 38.0 38.0 36.0 38.0 98-99 37.085200177087415 38.0 38.0 38.0 36.0 38.0 100 35.74920453364333 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 3.0 20 12.0 21 46.0 22 162.0 23 483.0 24 1172.0 25 2431.0 26 4594.0 27 7892.0 28 13008.0 29 19557.0 30 25834.0 31 33066.0 32 42263.0 33 57030.0 34 89158.0 35 184646.0 36 716017.0 37 3018542.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 48.31858604393447 17.716980129585124 11.828580076073623 22.135853750406792 2 14.9371105735176 20.19851054229943 41.68424863135851 23.180130252824462 3 19.444756094350144 25.571590305587428 29.68400913396458 25.299644466097853 4 13.196135786386638 17.673905267562258 39.01529347358913 30.114665472461976 5 13.958769577002958 37.5120139964838 34.82289495331501 13.706321473198232 6 30.471313944585233 37.260016565794956 18.721957458355433 13.546712031264379 7 27.46124448399826 32.716852043541664 22.507469313904735 17.314434158555343 8 24.7524381415569 36.628362614435396 20.762178373572908 17.857020870434802 9 26.151849325271186 17.60400349532581 21.354908399503216 34.88923877989979 10-11 24.69489430055058 26.8793543324867 28.269787633339945 20.155963733622777 12-13 25.621751002629082 24.333157966145436 28.59599195050376 21.449099080721723 14-15 22.79088340469782 25.64369166748104 26.42308338211672 25.142341545704422 16-17 22.137087171566037 28.85618451601028 27.104987385896685 21.901740926527 18-19 22.15971570591065 27.905940251181477 28.905734839119184 21.02860920378869 20-21 22.983168506003437 26.96924352504159 28.920866159148638 21.126721809806337 22-23 22.816561801350897 26.77380521737068 28.76638063441045 21.64325234686798 24-25 22.507470164414784 26.950332065295264 28.84305443138029 21.699143338909664 26-27 22.389327738080283 27.090085258569896 28.85574299321127 21.664844010138548 28-29 22.350820176352514 27.083773376058417 28.892615968365337 21.672790479223732 30-31 22.593359487657786 26.987053181779526 28.762851673431726 21.656735657130966 32-33 22.33173286036733 27.211836621568054 28.692568647842513 21.763861870222097 34-35 22.523011423725258 27.166131402604986 28.707670426856435 21.603186746813318 36-37 22.526718411978184 27.03367397100658 28.69278122367303 21.746826393342207 38-39 22.340848855882673 27.266658332411986 28.74037616393527 21.65211664777007 40-41 22.61407351528867 27.091362423162803 28.62072036863679 21.67384369291174 42-43 22.503885392388046 27.18647834668139 28.425377051355472 21.88425920957509 44-45 22.500437704377227 27.264811455383946 28.38946290447724 21.845287935761583 46-47 22.64180076039144 27.271648051355978 28.08538659799244 22.001164590260146 48-49 22.593643323675117 27.417661328129732 27.985243586188002 22.003451762007145 50-51 22.56279493598412 27.53268834448775 27.90083699701177 22.003679722516363 52-53 22.779879451387018 27.445412906927736 27.821441810158788 21.95326583152646 54-55 22.741930574380884 27.364183309336106 27.828350017994723 22.065536098288288 56-57 22.664911378819024 27.52543759106738 27.836564727099393 21.973086303014195 58-59 22.680658938186514 27.498256648191933 27.850739676943476 21.97034473667808 60-61 22.77372764615342 27.49319266927269 27.869034212536192 21.86404547203769 62-63 22.733528492032697 27.54396030380004 27.8430202461941 21.879490957973164 64-65 22.776757481618667 27.458970047921618 27.83714490848806 21.927127561971655 66-67 22.997654311054447 27.523526181058557 27.62641412052541 21.852405387361586 68-69 22.708106998807928 27.47942328004888 27.849580819064894 21.962888902078294 70-71 22.67320542094145 27.337773114205156 27.957686627211597 22.031334837641797 72-73 22.84897258524267 27.474737796598365 27.698459961306227 21.977829656852734 74-75 22.557441270410838 27.570482353805865 27.793674494670245 22.078401881113052 76-77 22.661449548933756 27.321627972102952 27.781109603912412 22.235812875050875 78-79 22.578779421609298 27.410334109160505 27.736871188845186 22.274015280385004 80-81 22.5697884571808 27.46387020482836 27.70302234054101 22.26331899744983 82-83 22.714601722272626 27.31029190874062 27.79540490632953 22.179701462657224 84-85 22.683470968022483 27.376761960055873 27.72351264333233 22.21625442858931 86-87 22.58602456199905 27.36224082248395 27.782719955941754 22.26901465957525 88-89 22.665468581064722 27.32434329320706 27.726275723518107 22.28391240221011 90-91 22.68329248434754 27.411920748267914 27.672735723813858 22.232051043570685 92-93 22.710343000991983 27.415785549889215 27.656777068361095 22.21709438075771 94-95 22.56353577801977 27.45314113347822 27.677349499398176 22.30597358910384 96-97 22.773901382876463 27.51301061283143 27.67555472013919 22.037533284152918 98-99 23.81485005238133 29.408645954041436 27.923746107522224 18.85275788605501 100 30.413661664676507 40.47588598163877 29.110452353684725 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 544.0 1 555.0 2 759.5 3 1055.0 4 1369.0 5 1926.0 6 2451.0 7 3046.0 8 4103.5 9 4855.5 10 4931.0 11 5003.0 12 5464.5 13 6633.5 14 8894.0 15 11524.5 16 13930.0 17 16073.5 18 16708.5 19 15524.5 20 13796.0 21 12490.0 22 12314.0 23 13807.5 24 17020.0 25 22089.0 26 29233.5 27 37349.0 28 45657.0 29 55233.5 30 64580.0 31 73404.5 32 83865.5 33 95712.0 34 106695.0 35 116755.0 36 128338.5 37 137761.0 38 144790.0 39 151774.5 40 158237.5 41 163776.5 42 166741.5 43 169490.0 44 173242.5 45 176797.0 46 177910.0 47 177716.0 48 177325.0 49 176342.5 50 174688.0 51 170382.5 52 163571.5 53 154777.0 54 145227.0 55 135819.5 56 124459.5 57 112286.5 58 100544.0 59 86796.5 60 72955.5 61 59682.5 62 47254.5 63 36630.0 64 27816.0 65 21111.0 66 15798.5 67 12001.5 68 9189.5 69 6969.5 70 5196.0 71 3804.5 72 2679.0 73 1756.0 74 1190.5 75 808.5 76 513.5 77 312.0 78 198.0 79 123.5 80 77.0 81 53.5 82 36.5 83 22.5 84 15.0 85 12.5 86 9.5 87 7.0 88 5.0 89 4.0 90 3.0 91 2.0 92 1.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.01000968710002761 3 7.115891303337163E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 2.728061492878277E-4 26-27 1.8979791148750674E-4 28-29 0.0022782816630127142 30-31 0.011853089154946003 32-33 0.0066875281051698285 34-35 5.36831918642049E-4 36-37 2.3950612878220596E-5 38-39 7.707921792535022E-4 40-41 1.2118236176182672E-5 42-43 0.0012073107421509863 44-45 6.266044452547982E-4 46-47 0.0014870052470219313 48-49 0.0032744298399041264 50-51 0.0018521750141590589 52-53 0.0 54-55 0.0012533482302722989 56-57 0.04706358677397165 58-59 0.06618986556435183 60-61 0.044721469833401375 62-63 0.01285374579575398 64-65 0.0 66-67 0.0 68-69 2.0372612363785318E-4 70-71 0.001398869356985014 72-73 0.005413456551542337 74-75 0.009011829808031259 76-77 0.018590813514534055 78-79 0.012751502005832636 80-81 0.006377175527365784 82-83 0.03708662592276615 84-85 0.025922819321767987 86-87 0.008114866152922947 88-89 0.0024588837897036643 90-91 0.003365436872363078 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 19.0 20-21 112.0 22-23 280.0 24-25 336.0 26-27 960.0 28-29 2557.0 30-31 7556.0 32-33 9808.0 34-35 13925.0 36-37 22223.0 38-39 26042.0 40-41 25287.0 42-43 28925.0 44-45 34102.0 46-47 34631.0 48-49 33173.0 50-51 30364.0 52-53 28490.0 54-55 31289.0 56-57 32617.0 58-59 32702.0 60-61 31821.0 62-63 31129.0 64-65 32975.0 66-67 34361.0 68-69 35359.0 70-71 35304.0 72-73 32716.0 74-75 33501.0 76-77 34986.0 78-79 35994.0 80-81 35854.0 82-83 33808.0 84-85 33749.0 86-87 35090.0 88-89 36475.0 90-91 36347.0 92-93 35684.0 94-95 41002.0 96-97 128294.0 98-99 978300.0 100-101 2087769.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.72720060806425 #Duplication Level Percentage of deduplicated Percentage of total 1 92.84052200772582 83.3032014274462 2 5.310376227131199 9.52970386072193 3 1.0767042329807561 2.8982897012464877 4 0.3644591634242565 1.3080760188006213 5 0.1648476560395147 0.7395659351613355 6 0.07661892720832703 0.41248811111977396 7 0.04757768731647504 0.2988308886019177 8 0.029599972046976418 0.21247381038817176 9 0.018057739294134047 0.1458243356555601 >10 0.06887537056517386 0.9392048131482139 >50 0.0016199129836187735 0.0957941091342515 >100 7.044839012189181E-4 0.0989024859429222 >500 3.6619382505183604E-5 0.017644502632599077 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.3719637677790544E-5 0.0 0.0 0.0 3 0.0 2.3719637677790544E-5 0.0 0.0 0.0 4 0.0 4.743927535558109E-5 0.0 2.3719637677790544E-5 0.0 5 0.0 7.115891303337163E-5 0.0 4.743927535558109E-5 0.0 6 4.743927535558109E-5 7.115891303337163E-5 0.0 4.743927535558109E-5 0.0 7 4.743927535558109E-5 7.115891303337163E-5 0.0 4.743927535558109E-5 0.0 8 4.743927535558109E-5 7.115891303337163E-5 0.0 4.743927535558109E-5 0.0 9 4.743927535558109E-5 1.660374637445338E-4 0.0 1.1859818838895272E-4 0.0 10-11 8.30187318722669E-5 1.660374637445338E-4 0.0 1.1859818838895272E-4 0.0 12-13 1.1859818838895272E-4 1.660374637445338E-4 0.0 1.1859818838895272E-4 0.0 14-15 1.4231782606674326E-4 3.2021510865017235E-4 0.0 1.30458007227848E-4 0.0 16-17 2.134767391001149E-4 3.320749274890676E-4 0.0 1.4231782606674326E-4 0.0 18-19 2.134767391001149E-4 3.439347463279629E-4 0.0 1.660374637445338E-4 0.0 20-21 2.134767391001149E-4 3.795142028446487E-4 0.0 1.8975710142232435E-4 0.0 22-23 2.134767391001149E-4 4.269534782002298E-4 0.0 2.2533655793901018E-4 1.1859818838895272E-5 24-25 2.2533655793901018E-4 4.5067311587802035E-4 0.0 2.4905619561680075E-4 2.3719637677790544E-5 26-27 2.3719637677790544E-4 4.7439275355581087E-4 0.0 2.964954709723818E-4 2.3719637677790544E-5 28-29 2.3719637677790544E-4 4.7439275355581087E-4 0.0 4.625329347169156E-4 2.3719637677790544E-5 30-31 2.3719637677790544E-4 4.981123912336014E-4 0.0 0.0013282997099562704 2.3719637677790544E-5 32-33 2.3719637677790544E-4 5.21832028911392E-4 0.0 0.003095412716951666 2.3719637677790544E-5 34-35 2.3719637677790544E-4 6.285703984614494E-4 0.0 0.005111581919563863 4.743927535558109E-5 36-37 2.3719637677790544E-4 7.353087680115069E-4 0.0 0.0087762659407825 4.743927535558109E-5 38-39 2.3719637677790544E-4 7.827480433670879E-4 0.0 0.01369809075892404 4.743927535558109E-5 40-41 2.3719637677790544E-4 8.30187318722669E-4 0.0 0.019355224345077082 4.743927535558109E-5 42-43 2.3719637677790544E-4 8.30187318722669E-4 0.0 0.02390939477921287 5.929909419447636E-5 44-45 2.3719637677790544E-4 8.420471375615643E-4 0.0 0.029151434706004578 7.115891303337163E-5 46-47 2.3719637677790544E-4 8.539069564004596E-4 0.0 0.03499832539357994 7.115891303337163E-5 48-49 2.3719637677790544E-4 8.539069564004596E-4 0.0 0.041212870465161075 7.115891303337163E-5 50-51 2.60916014455696E-4 8.776265940782501E-4 0.0 0.04687000405131411 7.115891303337163E-5 52-53 2.60916014455696E-4 8.776265940782501E-4 0.0 0.05265759564469501 7.115891303337163E-5 54-55 2.60916014455696E-4 8.894864129171455E-4 0.0 0.05826728995549247 7.115891303337163E-5 56-57 2.60916014455696E-4 9.013462317560407E-4 0.0 0.06433951720100686 8.30187318722669E-5 58-59 2.60916014455696E-4 9.013462317560407E-4 0.0 0.07038802480884343 9.487855071116217E-5 60-61 2.846356521334865E-4 9.60645325950517E-4 0.0 0.07612817712686876 9.487855071116217E-5 62-63 3.320749274890676E-4 9.725051447894124E-4 0.0 0.08184460980721628 9.487855071116217E-5 64-65 3.320749274890676E-4 0.0011148229708561556 0.0 0.08725268719775252 9.487855071116217E-5 66-67 3.557945651668582E-4 0.0011148229708561556 0.0 0.09306399842881119 9.487855071116217E-5 68-69 3.557945651668582E-4 0.0011148229708561556 0.0 0.09819929998605284 9.487855071116217E-5 70-71 3.6765438400575344E-4 0.0011504024273728413 0.0 0.1028364891520609 9.487855071116217E-5 72-73 3.795142028446487E-4 0.0011622622462117366 0.0 0.10683324810076861 9.487855071116217E-5 74-75 3.795142028446487E-4 0.0011622622462117366 0.0 0.1101065581003037 9.487855071116217E-5 76-77 3.795142028446487E-4 0.0011859818838895271 0.0 0.11332056900564433 9.487855071116217E-5 78-79 3.795142028446487E-4 0.0011859818838895271 0.0 0.1156569533169067 9.487855071116217E-5 80-81 3.795142028446487E-4 0.0011859818838895271 0.0 0.11643970136027379 9.487855071116217E-5 82-83 3.795142028446487E-4 0.0011859818838895271 0.0 0.11667689773705169 9.487855071116217E-5 84-85 3.795142028446487E-4 0.0011859818838895271 0.0 0.11687851465731292 9.487855071116217E-5 86-87 3.9137402168354395E-4 0.0012334211592451084 0.0 0.11696153338918518 9.487855071116217E-5 88 4.0323384052243927E-4 0.0012808604346006894 0.0 0.11696153338918518 9.487855071116217E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5885 0.0 52.260586 1 GTATCAA 11400 0.0 39.96243 1 TCAACGC 12725 0.0 35.09361 4 ATCAACG 12970 0.0 34.4307 3 TATCAAC 13130 0.0 34.274662 2 CAACGCA 13220 0.0 33.844116 5 AACGCAG 13535 0.0 33.05646 6 ACGCAGA 15715 0.0 28.497974 7 CGCAGAG 16340 0.0 27.381834 8 GCAGAGT 18660 0.0 24.023163 9 TGGTATC 2600 0.0 23.132963 2 GTGGTAT 2860 0.0 23.118048 1 GAGTACT 10370 0.0 21.51107 12-13 CAGAGTA 18400 0.0 20.514671 10-11 GTACATG 14905 0.0 20.061874 1 GTACTTT 11210 0.0 19.918324 14-15 TACATGG 14960 0.0 19.446358 2 ACATGGG 15025 0.0 18.991127 3 AGAGTAC 17040 0.0 18.572632 10-11 CATGGGG 10505 0.0 16.930864 4 >>END_MODULE