##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139469_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4142344 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.831780025994945 28.0 18.0 33.0 18.0 33.0 2 30.01459004853291 32.0 27.0 33.0 25.0 33.0 3 27.34708899116056 29.0 25.0 31.0 18.0 33.0 4 31.165076343249137 32.0 31.0 33.0 29.0 33.0 5 32.58487271940717 33.0 33.0 33.0 32.0 33.0 6 37.04150041618948 38.0 37.0 38.0 35.0 38.0 7 37.09237837321091 38.0 38.0 38.0 35.0 38.0 8 37.331052901449034 38.0 38.0 38.0 36.0 38.0 9 37.48482477553772 38.0 38.0 38.0 37.0 38.0 10-11 37.395397026417896 38.0 38.0 38.0 37.0 38.0 12-13 37.575543943236 38.0 38.0 38.0 37.5 38.0 14-15 37.54594729457524 38.0 38.0 38.0 37.0 38.0 16-17 37.59437229259569 38.0 38.0 38.0 38.0 38.0 18-19 37.589097742727304 38.0 38.0 38.0 38.0 38.0 20-21 37.59532204653744 38.0 38.0 38.0 38.0 38.0 22-23 37.59965796150189 38.0 38.0 38.0 38.0 38.0 24-25 37.60403907098309 38.0 38.0 38.0 38.0 38.0 26-27 37.57427508375099 38.0 38.0 38.0 38.0 38.0 28-29 37.55438349782228 38.0 38.0 38.0 38.0 38.0 30-31 37.54995270815044 38.0 38.0 38.0 38.0 38.0 32-33 37.46226640439225 38.0 38.0 38.0 38.0 38.0 34-35 37.50837597176573 38.0 38.0 38.0 38.0 38.0 36-37 37.49524853885007 38.0 38.0 38.0 38.0 38.0 38-39 37.48598407257019 38.0 38.0 38.0 38.0 38.0 40-41 37.47363463820031 38.0 38.0 38.0 38.0 38.0 42-43 37.435825967870585 38.0 38.0 38.0 37.0 38.0 44-45 37.39889959733218 38.0 38.0 38.0 37.0 38.0 46-47 37.36954020284307 38.0 38.0 38.0 37.0 38.0 48-49 37.25422722211022 38.0 38.0 38.0 37.0 38.0 50-51 37.24784846777506 38.0 38.0 38.0 37.0 38.0 52-53 37.255932122999155 38.0 38.0 38.0 37.0 38.0 54-55 37.23782444860632 38.0 38.0 38.0 37.0 38.0 56-57 37.18721966738741 38.0 38.0 38.0 37.0 38.0 58-59 37.168899814086544 38.0 38.0 38.0 37.0 38.0 60-61 37.18260150053109 38.0 38.0 38.0 37.0 38.0 62-63 37.18603088666863 38.0 38.0 38.0 37.0 38.0 64-65 37.191957425572184 38.0 38.0 38.0 37.0 38.0 66-67 37.122391523754835 38.0 38.0 38.0 36.0 38.0 68-69 37.141407935372925 38.0 38.0 38.0 36.0 38.0 70-71 37.157730320625475 38.0 38.0 38.0 36.0 38.0 72-73 37.17437456287384 38.0 38.0 38.0 36.0 38.0 74-75 37.16016612653343 38.0 38.0 38.0 36.0 38.0 76-77 37.128990603074534 38.0 38.0 38.0 36.0 38.0 78-79 37.12590924350804 38.0 38.0 38.0 36.0 38.0 80-81 37.12341318825345 38.0 38.0 38.0 36.0 38.0 82-83 37.07136762562203 38.0 38.0 38.0 36.0 38.0 84-85 37.06810814154598 38.0 38.0 38.0 36.0 38.0 86-87 37.059233900841065 38.0 38.0 38.0 36.0 38.0 88-89 37.039002457040006 38.0 38.0 38.0 36.0 38.0 90-91 37.01525674093192 38.0 38.0 38.0 36.0 38.0 92-93 37.00074515298569 38.0 38.0 38.0 36.0 38.0 94-95 36.994816873165554 38.0 38.0 38.0 36.0 38.0 96-97 36.97375971363642 38.0 38.0 38.0 35.0 38.0 98-99 36.99468034055397 38.0 38.0 38.0 35.0 38.0 100 35.62924668656171 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 0.0 20 10.0 21 47.0 22 198.0 23 518.0 24 1280.0 25 2763.0 26 4945.0 27 8697.0 28 13987.0 29 20712.0 30 27554.0 31 34967.0 32 44289.0 33 59907.0 34 92220.0 35 186680.0 36 717132.0 37 2926436.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.8920389035773 17.73085480104984 12.338328250864727 22.038778044508135 2 14.812328070610015 20.253927969401943 41.86144151008628 23.07230244990176 3 19.473882293185284 25.63300528227624 29.724940691777572 25.168171732760904 4 13.052971940524497 17.84581386770389 39.30808257353807 29.79313161823354 5 13.91699965043946 37.58297234609197 34.85767961328175 13.642348390186813 6 30.16695378268922 37.55390667699254 18.845996373068 13.433143167250233 7 27.15909156747967 32.844012954983945 22.670401106233573 17.326494371302818 8 24.500065663305605 36.79240545932448 20.889380505337073 17.818148372032837 9 25.89818711338315 17.760234302124594 21.464779361636793 34.87679922285547 10-11 24.568010285963695 27.040257882976405 28.336685702587715 20.05504612847219 12-13 25.49211267823242 24.477481831542722 28.698159785860373 21.332245704364485 14-15 22.640068038772252 25.799293829773674 26.57491748633141 24.985720645122665 16-17 22.00758797434496 28.945580087023192 27.195218456023934 21.851613482607917 18-19 21.946704571131708 28.01803761348647 29.115145917383973 20.92011189799785 20-21 22.829980905519438 27.06588000158849 29.11462277024351 20.989516322648562 22-23 22.61387342378458 26.96529145333997 28.93317215986689 21.487662963008564 24-25 22.303676133903277 27.099404958290584 29.010151478441614 21.586767429364524 26-27 22.253414642362173 27.229292499648967 28.983588443248582 21.533704414740278 28-29 22.189598389480413 27.24607237772424 29.010597659490283 21.55373157330507 30-31 22.426008302816804 27.16320345189802 28.911326516202294 21.49946172908288 32-33 22.209305396164584 27.342041834042323 28.856690096230558 21.59196267356253 34-35 22.371592342749597 27.333938661410507 28.845587057523858 21.448881938316042 36-37 22.37600517810714 27.19244932512735 28.81382583860835 21.617719658157164 38-39 22.21767709970461 27.376026130872315 28.91457121468079 21.491725554742285 40-41 22.45926509650006 27.278075515437592 28.728154688270237 21.534504699792112 42-43 22.381820861450233 27.33001879930067 28.55558023611306 21.732580103136034 44-45 22.418330801803684 27.463149573180473 28.43403842095103 21.68448120406481 46-47 22.528635893382077 27.487378450624206 28.13479206465908 21.849193591334636 48-49 22.475359706277004 27.58411818174874 28.086433898322348 21.854088213651906 50-51 22.4442480338691 27.70274329040824 28.001359528559856 21.851649147162806 52-53 22.62716562277467 27.65077813778909 27.86506942160879 21.856986817827455 54-55 22.669035784932174 27.533405284010858 27.88173861842975 21.91582031262721 56-57 22.55875022809341 27.708255358996364 27.87157615206385 21.861418260846374 58-59 22.581246088921706 27.701332009092848 27.927738973756906 21.78968292822854 60-61 22.684030474072443 27.694824855303462 27.89768788775714 21.723456782866958 62-63 22.64523647418509 27.799546356524342 27.83839584082942 21.716821328461144 64-65 22.660571385124218 27.723841385097064 27.80682555673527 21.80876167304345 66-67 22.85884591426344 27.764438946380544 27.61761288212442 21.759102257231593 68-69 22.604081792898928 27.71464498100717 27.885039941762134 21.796233284331766 70-71 22.514752077853284 27.614745168541837 27.94749481627164 21.923007937333246 72-73 22.704863214089137 27.678710583283 27.785609585004718 21.830816617623146 74-75 22.444670622990127 27.772668379784303 27.850845012905257 21.93181598432031 76-77 22.51011662249496 27.50080668868362 27.90076351217899 22.08831317664243 78-79 22.44441042963602 27.60858309576116 27.77934806367804 22.167658410924783 80-81 22.504374437180154 27.611257129051385 27.75639326739342 22.127975166375037 82-83 22.545314706050334 27.522748720777486 27.898074130541513 22.03386244263067 84-85 22.56928992365347 27.501257453784184 27.83903336722894 22.090419255333405 86-87 22.43465164687894 27.530720716345662 27.897251838537485 22.137375798237912 88-89 22.572514626030838 27.538074758942262 27.762666358293153 22.126744256733748 90-91 22.570050222959008 27.601818666577127 27.756767900679698 22.071363209784167 92-93 22.623221356598506 27.53215957934331 27.79914976099972 22.04546930305846 94-95 22.421853818532895 27.634386051756426 27.79060441486131 22.153155714849373 96-97 22.5925073666405 27.723082438731794 27.806379405932237 21.878030788695472 98-99 23.65032127868381 29.59754726791805 28.034455539309388 18.717675914088755 100 30.03531354129517 40.688993039325915 29.27569341937891 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 704.0 1 691.0 2 821.5 3 1048.0 4 1380.0 5 1999.5 6 2536.5 7 3087.0 8 3958.0 9 4590.5 10 4622.5 11 4663.5 12 5277.0 13 6613.0 14 9052.5 15 11973.0 16 14674.5 17 16968.0 18 17627.0 19 16540.0 20 14904.0 21 13611.5 22 13519.0 23 15054.5 24 18364.5 25 23481.0 26 30425.0 27 38695.5 28 47264.0 29 56650.5 30 66286.0 31 75751.0 32 85905.0 33 96694.5 34 107179.5 35 116995.0 36 127441.5 37 136265.0 38 143269.0 39 149760.5 40 155945.5 41 160741.5 42 163667.5 43 167114.0 44 171542.0 45 175025.0 46 175703.5 47 175597.0 48 175420.5 49 173591.0 50 171024.0 51 165914.0 52 157951.0 53 149562.5 54 139966.5 55 129351.0 56 118040.5 57 106770.0 58 95413.5 59 81765.5 60 67669.0 61 55205.5 62 43981.5 63 33737.0 64 25062.5 65 18914.0 66 14230.5 67 10797.0 68 8312.5 69 6340.5 70 4697.0 71 3340.5 72 2320.0 73 1538.0 74 1024.5 75 632.5 76 385.5 77 250.0 78 168.5 79 108.5 80 76.0 81 52.5 82 28.0 83 15.5 84 11.0 85 9.5 86 9.0 87 8.0 88 6.0 89 4.0 90 3.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.009221831890350005 3 2.4140921178926713E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 2.1729580441639238E-4 26-27 2.897618797239487E-4 28-29 0.0026329195623749514 30-31 0.01228248160287352 32-33 0.0072916807978310036 34-35 7.529100885701569E-4 36-37 8.532655141649999E-5 38-39 7.96786181324999E-4 40-41 1.2336058409756244E-5 42-43 0.0015519953196787544 44-45 5.879970044680267E-4 46-47 0.0015648129102112877 48-49 0.003220766483863769 50-51 0.002169140320917251 52-53 0.0 54-55 0.0014850190883572028 56-57 0.04549944205734689 58-59 0.0630145003528759 60-61 0.043116179476538334 62-63 0.01271031258751804 64-65 0.0 66-67 0.0 68-69 2.3500791216344273E-4 70-71 0.0014376744401584066 72-73 0.005100904917441431 74-75 0.009255779850636452 76-77 0.01763782076902908 78-79 0.012203255805459813 80-81 0.005988410595299258 82-83 0.034389792695371374 84-85 0.024821733802586565 86-87 0.00761569025223317 88-89 0.0019349149460143494 90-91 0.0031266114370522243 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 26.0 20-21 131.0 22-23 308.0 24-25 381.0 26-27 1055.0 28-29 2692.0 30-31 7559.0 32-33 9827.0 34-35 13548.0 36-37 21439.0 38-39 25985.0 40-41 25611.0 42-43 28863.0 44-45 33940.0 46-47 34926.0 48-49 32892.0 50-51 29632.0 52-53 27788.0 54-55 30215.0 56-57 31511.0 58-59 31489.0 60-61 31470.0 62-63 30562.0 64-65 31699.0 66-67 33300.0 68-69 34485.0 70-71 34611.0 72-73 31801.0 74-75 32291.0 76-77 33728.0 78-79 34855.0 80-81 35034.0 82-83 32889.0 84-85 32118.0 86-87 33233.0 88-89 35125.0 90-91 35594.0 92-93 34768.0 94-95 40294.0 96-97 126451.0 98-99 960084.0 100-101 2058134.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.37912818266098 #Duplication Level Percentage of deduplicated Percentage of total 1 92.35575148810139 82.54676550660996 2 5.694537377187748 10.179455723532357 3 1.1525806042318583 3.0904994869946427 4 0.38459683417684737 1.374997189621522 5 0.16423191334548082 0.7339452617294702 6 0.09449258982690742 0.5067399179070459 7 0.04869519560216828 0.30466338907241636 8 0.028350944821835398 0.20271861850642997 9 0.01547895675232971 0.12451460937303084 >10 0.05992578612182794 0.8039272716303212 >50 7.977242557098307E-4 0.04690586985758512 >100 5.605855759621085E-4 0.08486715516527511 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.8281842357853427E-5 0.0 0.0 0.0 3 0.0 4.8281842357853427E-5 0.0 0.0 0.0 4 0.0 9.656368471570685E-5 0.0 0.0 0.0 5 0.0 9.656368471570685E-5 0.0 2.4140921178926713E-5 0.0 6 2.4140921178926713E-5 9.656368471570685E-5 0.0 2.4140921178926713E-5 0.0 7 2.4140921178926713E-5 1.2070460589463357E-4 0.0 2.4140921178926713E-5 0.0 8 2.4140921178926713E-5 1.2070460589463357E-4 0.0 2.4140921178926713E-5 2.4140921178926713E-5 9 2.4140921178926713E-5 1.4484552707356028E-4 0.0 2.4140921178926713E-5 2.4140921178926713E-5 10-11 2.4140921178926713E-5 1.4484552707356028E-4 0.0 2.4140921178926713E-5 2.4140921178926713E-5 12-13 2.4140921178926713E-5 1.4484552707356028E-4 0.0 2.4140921178926713E-5 2.4140921178926713E-5 14-15 2.4140921178926713E-5 2.6555013296819383E-4 0.0 2.4140921178926713E-5 2.4140921178926713E-5 16-17 9.656368471570685E-5 2.6555013296819383E-4 0.0 4.8281842357853427E-5 4.8281842357853427E-5 18-19 1.0863414530517022E-4 2.8969105414712056E-4 0.0 4.8281842357853427E-5 4.8281842357853427E-5 20-21 1.2070460589463357E-4 3.138319753260473E-4 0.0 4.8281842357853427E-5 4.8281842357853427E-5 22-23 1.2070460589463357E-4 3.37972896504974E-4 0.0 4.8281842357853427E-5 4.8281842357853427E-5 24-25 1.2070460589463357E-4 3.621138176839007E-4 0.0 4.8281842357853427E-5 4.8281842357853427E-5 26-27 1.2070460589463357E-4 3.862547388628274E-4 0.0 8.449322412624349E-5 7.242276353678014E-5 28-29 1.2070460589463357E-4 3.862547388628274E-4 0.0 3.017615147365839E-4 7.242276353678014E-5 30-31 1.2070460589463357E-4 5.06959344757461E-4 0.0 9.052845442097518E-4 7.242276353678014E-5 32-33 1.2070460589463357E-4 5.06959344757461E-4 0.0 0.002631360408503012 7.242276353678014E-5 34-35 1.2070460589463357E-4 5.673116477047779E-4 0.0 0.004562634102817148 7.242276353678014E-5 36-37 1.2070460589463357E-4 6.397344112415579E-4 0.0 0.007737165237846013 8.449322412624349E-5 38-39 1.2070460589463357E-4 6.75945793009948E-4 0.0 0.012601560855399745 9.656368471570685E-5 40-41 1.2070460589463357E-4 6.75945793009948E-4 0.0 0.017647013381795428 1.2070460589463357E-4 42-43 1.2070460589463357E-4 7.000867141888746E-4 0.0 0.02289766373821199 1.2070460589463357E-4 44-45 1.2070460589463357E-4 8.570027018518984E-4 0.0 0.028848400808817422 1.4484552707356028E-4 46-47 1.2070460589463357E-4 9.656368471570685E-4 0.0 0.035366449527127634 1.5691598766302364E-4 48-49 1.2070460589463357E-4 9.77707307746532E-4 0.0 0.04190863916661677 1.68986448252487E-4 50-51 1.2070460589463357E-4 0.0011587642165884822 0.0 0.048088714988422016 1.68986448252487E-4 52-53 1.2070460589463357E-4 0.0011587642165884822 0.0 0.05424464988904833 1.68986448252487E-4 54-55 1.2070460589463357E-4 0.0011708346771779456 0.0 0.05966428669371737 1.8105690884195034E-4 56-57 1.2070460589463357E-4 0.0012311869801252624 0.0 0.0657477988308069 2.0519783002087707E-4 58-59 1.2070460589463357E-4 0.0012432574407147258 0.0 0.0722054952461698 2.1726829061034043E-4 60-61 1.4484552707356028E-4 0.0012553279013041891 0.0 0.07845799383151182 2.1726829061034043E-4 62-63 2.6555013296819383E-4 0.0012553279013041891 0.0 0.08484326748333794 2.1726829061034043E-4 64-65 2.776205935576572E-4 0.0014243143495566762 0.0 0.09080607501453283 2.293387511998038E-4 66-67 2.8969105414712056E-4 0.0014725961919145295 0.0 0.09703443267869592 2.4140921178926713E-4 68-69 2.8969105414712056E-4 0.0014725961919145295 0.0 0.10259891501043852 2.5347967237873047E-4 70-71 2.8969105414712056E-4 0.0014725961919145295 0.0 0.10748745154917119 2.6555013296819383E-4 72-73 3.37972896504974E-4 0.0014725961919145295 0.0 0.11144656262251518 3.37972896504974E-4 74-75 3.37972896504974E-4 0.0014725961919145295 0.0 0.11435554362457584 3.37972896504974E-4 76-77 3.37972896504974E-4 0.0014967371130934562 0.0 0.11697483357248939 3.621138176839007E-4 78-79 3.37972896504974E-4 0.0014967371130934562 0.0 0.11891817772739299 3.621138176839007E-4 80-81 3.37972896504974E-4 0.0014967371130934562 0.0 0.11965447582335026 3.7418427827336405E-4 82-83 3.37972896504974E-4 0.0014967371130934562 0.0 0.12012522378633933 3.862547388628274E-4 84-85 3.37972896504974E-4 0.0014967371130934562 0.0 0.12029421023459182 3.862547388628274E-4 86-87 3.37972896504974E-4 0.001520878034272383 0.0 0.12034249207694966 4.3453658122068087E-4 88 3.621138176839007E-4 0.0015691598766302364 0.0 0.12034249207694966 4.5867750239960754E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6090 0.0 49.69068 1 GTATCAA 11090 0.0 36.870583 1 TCAACGC 12565 0.0 31.723274 4 ATCAACG 12680 0.0 31.46922 3 TATCAAC 12785 0.0 31.348076 2 CAACGCA 12915 0.0 30.863565 5 AACGCAG 13330 0.0 29.870678 6 ACGCAGA 15215 0.0 26.169973 7 CGCAGAG 15790 0.0 25.298067 8 GTGGTAT 3100 0.0 24.370117 1 TGGTATC 2875 0.0 23.60507 2 GCAGAGT 18360 0.0 21.687155 9 GAGTACT 10195 0.0 20.616388 12-13 GTACATG 13720 0.0 19.381168 1 CAGAGTA 18030 0.0 19.11351 10-11 GTACTTT 11235 0.0 18.651222 14-15 TACATGG 13800 0.0 18.371872 2 ACATGGG 13565 0.0 18.247433 3 AGAGTAC 16830 0.0 17.458761 10-11 ACTTTTT 13260 0.0 15.900128 16-17 >>END_MODULE