##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139464_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6680791 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.574073339519227 31.0 18.0 33.0 18.0 33.0 2 31.442113815564653 33.0 32.0 33.0 27.0 34.0 3 32.45268427047037 33.0 33.0 33.0 31.0 34.0 4 32.584723575396985 33.0 33.0 34.0 31.0 34.0 5 33.16305344681491 33.0 33.0 34.0 33.0 34.0 6 36.995018703623565 38.0 37.0 38.0 35.0 38.0 7 37.11044410759145 38.0 38.0 38.0 36.0 38.0 8 37.05409464238591 38.0 38.0 38.0 36.0 38.0 9 37.315548712719796 38.0 38.0 38.0 36.0 38.0 10-11 37.38893792666168 38.0 38.0 38.0 37.0 38.0 12-13 37.510679573721134 38.0 38.0 38.0 37.0 38.0 14-15 37.487830782313054 38.0 38.0 38.0 37.0 38.0 16-17 37.50678130778227 38.0 38.0 38.0 37.0 38.0 18-19 37.52114308021311 38.0 38.0 38.0 37.0 38.0 20-21 37.52925491829617 38.0 38.0 38.0 37.5 38.0 22-23 37.54134199083073 38.0 38.0 38.0 38.0 38.0 24-25 37.54939601033804 38.0 38.0 38.0 38.0 38.0 26-27 37.52413300849073 38.0 38.0 38.0 38.0 38.0 28-29 37.501641083492416 38.0 38.0 38.0 38.0 38.0 30-31 37.49696226043082 38.0 38.0 38.0 38.0 38.0 32-33 37.40548805054087 38.0 38.0 38.0 37.0 38.0 34-35 37.45728683303997 38.0 38.0 38.0 37.0 38.0 36-37 37.44819894191657 38.0 38.0 38.0 37.0 38.0 38-39 37.42805001446548 38.0 38.0 38.0 37.0 38.0 40-41 37.423558448340216 38.0 38.0 38.0 37.0 38.0 42-43 37.389929808581776 38.0 38.0 38.0 37.0 38.0 44-45 37.35545122566678 38.0 38.0 38.0 37.0 38.0 46-47 37.330293273400876 38.0 38.0 38.0 37.0 38.0 48-49 37.213881981201276 38.0 38.0 38.0 37.0 38.0 50-51 37.20238943622303 38.0 38.0 38.0 37.0 38.0 52-53 37.20503525525933 38.0 38.0 38.0 37.0 38.0 54-55 37.18208306747256 38.0 38.0 38.0 36.5 38.0 56-57 37.11802357555039 38.0 38.0 38.0 36.0 38.0 58-59 37.092412015289824 38.0 38.0 38.0 36.0 38.0 60-61 37.09858755342124 38.0 38.0 38.0 36.0 38.0 62-63 37.09394396842853 38.0 38.0 38.0 36.0 38.0 64-65 37.09639794115895 38.0 38.0 38.0 36.0 38.0 66-67 37.02202014482914 38.0 38.0 38.0 36.0 38.0 68-69 37.03297758070451 38.0 38.0 38.0 36.0 38.0 70-71 37.04241460952845 38.0 38.0 38.0 36.0 38.0 72-73 37.0534539430639 38.0 38.0 38.0 36.0 38.0 74-75 37.03464796517528 38.0 38.0 38.0 36.0 38.0 76-77 36.99659800293106 38.0 38.0 38.0 36.0 38.0 78-79 36.99244768348094 38.0 38.0 38.0 36.0 38.0 80-81 36.98719459226211 38.0 38.0 38.0 36.0 38.0 82-83 36.91728888831788 38.0 38.0 38.0 35.0 38.0 84-85 36.9125170797426 38.0 38.0 38.0 35.0 38.0 86-87 36.9025763438506 38.0 38.0 38.0 35.0 38.0 88-89 36.87632985445779 38.0 38.0 38.0 35.0 38.0 90-91 36.84727972307652 38.0 38.0 38.0 35.0 38.0 92-93 36.82582481688048 38.0 38.0 38.0 35.0 38.0 94-95 36.81802887323859 38.0 38.0 38.0 35.0 38.0 96-97 36.789092673892135 38.0 38.0 38.0 35.0 38.0 98-99 36.809815600323354 38.0 38.0 38.0 35.0 38.0 100 35.33671865745774 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 19.0 21 91.0 22 315.0 23 1012.0 24 2466.0 25 5104.0 26 9095.0 27 15342.0 28 24297.0 29 36020.0 30 47134.0 31 60474.0 32 78698.0 33 105597.0 34 159295.0 35 293268.0 36 900385.0 37 4942174.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.808461153776555 19.25989003397951 14.401588075424002 25.530060736819937 2 14.338774601612963 19.788955058226808 43.688644264767106 22.183626075393125 3 18.82201057060617 25.47327486719385 29.620493983495965 26.084220578704016 4 12.79110512512665 17.801589662062472 38.2212375750117 31.186067637799177 5 14.100231544438376 36.889673692830684 35.217356747127695 13.792738015603243 6 30.705959818231104 37.17860654524292 18.489786613591118 13.625647022934858 7 27.435239330193085 31.94579803499316 22.470887055140626 18.148075579673126 8 24.19066844030894 37.43710886929407 20.687011463163568 17.68521122723342 9 25.224572958501472 17.847826701957896 21.454914545298603 35.47268579424203 10-11 24.83255351050497 26.95860415331059 28.149144315396185 20.059698020788257 12-13 25.369555790624194 24.014244720423076 28.709661775080225 21.906537713872503 14-15 22.42918540633886 25.50448741773242 26.355000478236786 25.711326697691934 16-17 22.156523082371535 28.669127652698613 27.08909019904978 22.085259065880074 18-19 22.15882071449324 27.7268140853381 28.74185107721526 21.372514122953405 20-21 22.801942968012217 26.902519448914614 28.699372686154323 21.596164896918843 22-23 22.560880592262784 26.862837671862504 28.61811837082528 21.958163365049437 24-25 22.37507831347396 27.011048842906725 28.71389252958696 21.89998031403235 26-27 22.291367687097924 27.096515040124242 28.70888061675173 21.903236656026106 28-29 22.16455307987064 27.042821921402243 28.77826476830213 22.014360230424987 30-31 22.43699332543048 26.915239425438287 28.71302617696547 21.93474107216576 32-33 22.210229951315412 27.127654427574505 28.67596753160785 21.98614808950223 34-35 22.410343488566244 27.15481269303573 28.709600865608405 21.72524295278962 36-37 22.40813415058806 27.024832125002863 28.54501507953052 22.022018644878564 38-39 22.25943529727657 27.109342589221676 28.730108286394717 21.90111382710704 40-41 22.541802993497686 26.95383866014206 28.57809960656944 21.926258739790814 42-43 22.466716507982095 27.037401044105142 28.45544570010359 22.04043674780917 44-45 22.41559071281237 27.217409052718455 28.37592294444215 21.991077290027025 46-47 22.587311142531785 27.11273700193836 28.060625146569006 22.239326708960853 48-49 22.488910346762395 27.198289625213956 28.02787669810861 22.28492332991504 50-51 22.411254608494705 27.359995886455224 28.039863874801323 22.188885630248745 52-53 22.587802992782652 27.304880863168325 27.99395147903766 22.11336466501137 54-55 22.567783661243848 27.24289495610791 27.889438778026015 22.29988260462223 56-57 22.59969547217723 27.415212708070147 27.815545874873116 22.16954594487951 58-59 22.48399532140435 27.48126282995445 27.990291986114794 22.044449862526406 60-61 22.622183078913025 27.586933536150227 27.8015138525191 21.98936953241765 62-63 22.507404127961195 27.731172200833647 27.774644936794424 21.986778734410734 64-65 22.472131195804977 27.694644102837547 27.77173055235475 22.061494149002726 66-67 22.539361273827858 27.703704522093176 27.534410582450143 22.222523621628827 68-69 22.500945836273996 27.617445912639667 27.875392185146325 22.006216065940013 70-71 22.706907498547064 27.37249265597905 27.82795085293761 22.092648992536276 72-73 22.567680905211123 27.108116146693906 27.96250851246822 22.36169443562675 74-75 22.445430617333855 27.28225468464896 28.076978255007486 22.1953364430097 76-77 22.575385731294958 27.376207842746602 27.706958493807644 22.341447932150793 78-79 22.57792451976142 27.279710028864802 27.665171778649793 22.47719367272398 80-81 22.484362756795548 27.283938409938575 27.846215574004272 22.385483259261605 82-83 22.599634452703935 27.24666044608346 27.848715369080885 22.304989732131723 84-85 22.63531718717958 27.29191465847614 27.709638355935134 22.363129798409144 86-87 22.505644492125924 27.301835101977034 27.786934076817175 22.40558632907986 88-89 22.577101664613764 27.326439624117 27.719526454493426 22.37693225677581 90-91 22.55990726442803 27.32777382742328 27.708703505963722 22.403615402184965 92-93 22.615062304630154 27.295809754871097 27.741841433647657 22.34728650685109 94-95 22.464989414866825 27.40293469679638 27.71713866779253 22.414937220544275 96-97 22.616058145063576 27.469430129296462 27.76650140339576 22.148010322244204 98-99 23.706984612708755 29.428835864021657 27.93701004829538 18.92716947497421 100 30.25883391915332 40.51695828656742 29.224207794279256 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1116.0 1 1044.5 2 1127.5 3 1415.0 4 1880.0 5 2800.5 6 3605.5 7 4438.0 8 5490.0 9 6114.0 10 6260.0 11 6357.0 12 7115.0 13 8968.5 14 12500.0 15 16729.0 16 20304.5 17 22571.0 18 22763.0 19 21278.5 20 19208.0 21 17583.5 22 17455.0 23 19859.0 24 24685.0 25 31757.0 26 42051.5 27 54495.0 28 67530.0 29 82324.0 30 96724.5 31 111006.0 32 127772.5 33 145241.5 34 161672.5 35 178343.5 36 196722.5 37 212228.0 38 223916.0 39 234504.5 40 246089.5 41 256471.0 42 263450.5 43 272871.5 44 282992.0 45 289359.5 46 290561.5 47 288307.0 48 285298.5 49 281839.0 50 276976.0 51 268914.0 52 257467.5 53 242017.5 54 224295.0 55 206918.0 56 188581.0 57 169287.0 58 150087.5 59 127710.5 60 104638.5 61 83626.5 62 65258.0 63 49719.0 64 36391.0 65 26658.0 66 19767.5 67 14990.5 68 11367.0 69 8351.0 70 6057.5 71 4242.5 72 2856.0 73 1826.5 74 1140.0 75 743.0 76 463.5 77 264.5 78 149.5 79 96.0 80 68.5 81 45.5 82 33.0 83 22.0 84 12.0 85 6.0 86 4.5 87 3.5 88 2.5 89 3.0 90 2.0 91 0.5 92 1.0 93 2.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.011854883650753332 3 1.4968287437819861E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 7.48456663648141E-6 24-25 3.817416415983418E-4 26-27 3.518311689478302E-4 28-29 0.0031596480301840724 30-31 0.013326983726022383 32-33 0.008490296948135762 34-35 9.01479485594771E-4 36-37 1.3555292716756285E-4 38-39 9.297932752058831E-4 40-41 0.0 42-43 0.001792180844622039 44-45 7.053960806660288E-4 46-47 0.0014275684928071381 48-49 0.003681463899168898 50-51 0.002438059801387209 52-53 0.0 54-55 0.0018016736600052156 56-57 0.04971958488082526 58-59 0.06994735419070215 60-61 0.04760628490015859 62-63 0.014921734366662083 64-65 0.0 66-67 0.0 68-69 1.9964841913390518E-4 70-71 0.001948122996088891 72-73 0.005841382472953085 74-75 0.0105491472288228 76-77 0.019427793282070865 78-79 0.014412913970917943 80-81 0.006617896373761913 82-83 0.038494675391298194 84-85 0.02792585336634161 86-87 0.00838193787329349 88-89 0.0028312994860917435 90-91 0.0033511751869757266 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 49.0 20-21 219.0 22-23 510.0 24-25 488.0 26-27 1106.0 28-29 2242.0 30-31 7540.0 32-33 9798.0 34-35 14078.0 36-37 23402.0 38-39 28226.0 40-41 29142.0 42-43 33027.0 44-45 40595.0 46-47 42461.0 48-49 40172.0 50-51 36065.0 52-53 34664.0 54-55 38971.0 56-57 40574.0 58-59 43062.0 60-61 44550.0 62-63 44412.0 64-65 48250.0 66-67 52807.0 68-69 54771.0 70-71 59562.0 72-73 49253.0 74-75 49442.0 76-77 52689.0 78-79 55446.0 80-81 55496.0 82-83 52174.0 84-85 52392.0 86-87 54428.0 88-89 57747.0 90-91 59139.0 92-93 57954.0 94-95 67634.0 96-97 214099.0 98-99 1621551.0 100-101 3410604.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.26324653687809 #Duplication Level Percentage of deduplicated Percentage of total 1 90.07099395990812 76.79745363825303 2 6.945749436244175 11.844342931317382 3 1.6655321322079801 4.260260304106237 4 0.5849134013649157 1.9948646217320292 5 0.27736005989504153 1.1824309583157102 6 0.14405507574691065 0.7369562062978494 7 0.08695973489175417 0.5190128520400037 8 0.0569354183694752 0.3883598890493489 9 0.03628504007591341 0.27844022858337963 >10 0.12765090947136304 1.7019173222446689 >50 0.002884823824384774 0.15979741144727738 >100 6.22430901066183E-4 0.09428807240108615 >500 2.8788550407713692E-5 0.016151302682207706 >1k 2.8788548495440015E-5 0.025724261529802398 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 5.987314975127945E-5 0.0 0.0 0.0 5 0.0 5.987314975127945E-5 0.0 1.4968287437819863E-5 0.0 6 5.987314975127945E-5 5.987314975127945E-5 0.0 1.4968287437819863E-5 0.0 7 5.987314975127945E-5 7.484143718909932E-5 0.0 1.4968287437819863E-5 1.4968287437819863E-5 8 5.987314975127945E-5 8.980972462691917E-5 0.0 1.4968287437819863E-5 4.4904862313459586E-5 9 5.987314975127945E-5 1.7961944925383834E-4 0.0 2.9936574875639726E-5 5.987314975127945E-5 10-11 7.484143718909932E-5 1.8710359297274828E-4 0.0 2.9936574875639726E-5 5.987314975127945E-5 12-13 7.484143718909932E-5 1.9458773669165822E-4 0.0 2.9936574875639726E-5 5.987314975127945E-5 14-15 8.980972462691917E-5 2.0955602412947808E-4 0.0 4.4904862313459586E-5 8.232558090800925E-5 16-17 9.729386834582911E-5 2.0955602412947808E-4 0.0 5.987314975127945E-5 8.980972462691917E-5 18-19 1.0477801206473904E-4 2.394925990051178E-4 0.0 5.987314975127945E-5 1.1226215578364896E-4 20-21 1.0477801206473904E-4 2.694291738807575E-4 0.0 7.484143718909932E-5 1.3471458694037876E-4 22-23 1.0477801206473904E-4 3.068498924753072E-4 0.0 8.980972462691917E-5 1.7961944925383834E-4 24-25 1.0477801206473904E-4 3.3678646735094695E-4 0.0 1.197462995025589E-4 2.2452431156729796E-4 26-27 1.0477801206473904E-4 3.4427061106985686E-4 0.0 1.2723044322146884E-4 2.2452431156729796E-4 28-29 1.0477801206473904E-4 3.4427061106985686E-4 0.0 2.394925990051178E-4 2.394925990051178E-4 30-31 1.0477801206473904E-4 4.041437608211363E-4 0.0 8.082875216422727E-4 2.619450301618476E-4 32-33 1.197462995025589E-4 4.265961919778661E-4 0.0 0.0027092600262453954 2.843974613185774E-4 34-35 1.197462995025589E-4 5.38858347761515E-4 0.0 0.004565327668535058 2.843974613185774E-4 36-37 1.197462995025589E-4 6.436363598262541E-4 0.0 0.007820930186260878 2.9188160503748736E-4 38-39 1.197462995025589E-4 6.885412221397137E-4 0.0 0.01627052844491019 3.143340361942171E-4 40-41 1.3471458694037876E-4 7.783509467666329E-4 0.0 0.025251500907602108 3.143340361942171E-4 42-43 1.3471458694037876E-4 8.008033779233626E-4 0.0 0.030842156265627828 3.143340361942171E-4 44-45 1.3471458694037876E-4 9.205496774259217E-4 0.0 0.03815416467900283 3.143340361942171E-4 46-47 1.3471458694037876E-4 0.0010178435457717508 0.0 0.04610232530848518 3.517547547887668E-4 48-49 1.421987306592887E-4 0.0010328118332095706 0.0 0.05367627875202203 3.8169132966440653E-4 50-51 1.7213530553492843E-4 0.0011226215578364898 0.0 0.06142985164481271 3.8917547338331645E-4 52-53 1.9458773669165822E-4 0.0011525581327121294 0.0 0.08222080289594451 4.0414376082113627E-4 54-55 1.9458773669165822E-4 0.0011525581327121294 0.0 0.10777915369602192 4.1911204825895615E-4 56-57 1.9458773669165822E-4 0.0011525581327121294 0.0 0.140013360693367 4.4156447941568595E-4 58-59 1.9458773669165822E-4 0.0011600422764310393 0.0 0.16649226117087035 4.715010542913257E-4 60-61 2.0955602412947808E-4 0.0012199154261823188 0.0 0.17511399473505457 4.789851980102356E-4 62-63 2.0955602412947808E-4 0.0012573361447768684 0.0 0.1862204640139169 5.014376291669655E-4 64-65 2.0955602412947808E-4 0.0013770824442794274 0.0 0.19188596080913173 5.164059166047853E-4 66-67 2.0955602412947808E-4 0.0013770824442794274 0.0 0.19701259925658504 5.238900603236952E-4 68-69 2.0955602412947808E-4 0.001414503162873977 0.0 0.20244608759651364 5.238900603236952E-4 70-71 2.0955602412947808E-4 0.0014294714503117968 0.0 0.2069365738278596 5.463424914804249E-4 72-73 2.394925990051178E-4 0.0014444397377496167 0.0 0.21080587613053603 6.436363598262541E-4 74-75 2.394925990051178E-4 0.0015043128875008964 0.0 0.21406147864826186 6.436363598262541E-4 76-77 2.394925990051178E-4 0.0015941226121278153 0.0 0.2172796604473931 6.436363598262541E-4 78-79 2.394925990051178E-4 0.0016315433307223651 0.0 0.21929289510777988 6.436363598262541E-4 80-81 2.394925990051178E-4 0.001639027474441275 0.0 0.22008621434198436 6.58604647264074E-4 82-83 2.394925990051178E-4 0.0016614799055980048 0.0 0.22060262025858915 7.035095095775335E-4 84-85 2.394925990051178E-4 0.0016614799055980048 0.0 0.22080469213899973 7.035095095775335E-4 86-87 2.394925990051178E-4 0.0016914164804736444 0.0 0.22089450186362664 7.259619407342633E-4 88 2.394925990051178E-4 0.0017812262051005636 0.0 0.22090198600734554 7.334460844531733E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8160 0.0 45.54773 1 GTATCAA 14590 0.0 35.93744 1 TCAACGC 16530 0.0 30.928246 4 ATCAACG 16895 0.0 30.414066 3 CAACGCA 16825 0.0 30.385965 5 TATCAAC 17760 0.0 29.376413 2 AACGCAG 17460 0.0 29.35537 6 ACGCAGA 20300 0.0 25.205788 7 CGCAGAG 20895 0.0 24.44653 8 TGGTATC 4395 0.0 21.018261 2 GCAGAGT 24690 0.0 20.776768 9 GTGGTAT 4815 0.0 20.62601 1 GTACATG 18645 0.0 20.143345 1 TACATGG 18820 0.0 19.65647 2 GAGTACT 14140 0.0 19.47326 12-13 CTTATAC 5545 0.0 19.240202 1 ACATGGG 18695 0.0 19.089241 3 CAGAGTA 24280 0.0 18.216537 10-11 AGAGTAC 22185 0.0 17.89424 10-11 TATACAC 7520 0.0 17.70251 3 >>END_MODULE