##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139462_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3824948 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.504300450620505 31.0 18.0 33.0 18.0 33.0 2 31.439581923728113 33.0 32.0 33.0 27.0 33.0 3 32.46975514438366 33.0 33.0 33.0 31.0 34.0 4 32.616206024238764 33.0 33.0 34.0 31.0 34.0 5 33.178479550571666 33.0 33.0 34.0 33.0 34.0 6 37.03463158191955 38.0 37.0 38.0 35.0 38.0 7 37.14081028029662 38.0 38.0 38.0 36.0 38.0 8 37.08664091642553 38.0 38.0 38.0 36.0 38.0 9 37.32982017010427 38.0 38.0 38.0 37.0 38.0 10-11 37.38438548707067 38.0 38.0 38.0 37.0 38.0 12-13 37.51334501802377 38.0 38.0 38.0 37.0 38.0 14-15 37.49459195262263 38.0 38.0 38.0 37.0 38.0 16-17 37.51648584503633 38.0 38.0 38.0 37.0 38.0 18-19 37.52980916341869 38.0 38.0 38.0 37.0 38.0 20-21 37.53527851912115 38.0 38.0 38.0 38.0 38.0 22-23 37.54588175806623 38.0 38.0 38.0 38.0 38.0 24-25 37.55441257396625 38.0 38.0 38.0 38.0 38.0 26-27 37.53102265305095 38.0 38.0 38.0 38.0 38.0 28-29 37.51077852031217 38.0 38.0 38.0 38.0 38.0 30-31 37.50553823556534 38.0 38.0 38.0 38.0 38.0 32-33 37.41840598961741 38.0 38.0 38.0 37.0 38.0 34-35 37.46688876229519 38.0 38.0 38.0 37.0 38.0 36-37 37.45693076786942 38.0 38.0 38.0 37.0 38.0 38-39 37.44412017605386 38.0 38.0 38.0 37.0 38.0 40-41 37.426580236580136 38.0 38.0 38.0 37.0 38.0 42-43 37.39261000466381 38.0 38.0 38.0 37.0 38.0 44-45 37.35517642974737 38.0 38.0 38.0 37.0 38.0 46-47 37.32132323129366 38.0 38.0 38.0 37.0 38.0 48-49 37.210153776104406 38.0 38.0 38.0 37.0 38.0 50-51 37.19607313204406 38.0 38.0 38.0 37.0 38.0 52-53 37.19732522024427 38.0 38.0 38.0 37.0 38.0 54-55 37.176527698678974 38.0 38.0 38.0 36.5 38.0 56-57 37.12086485254934 38.0 38.0 38.0 36.0 38.0 58-59 37.098946162406264 38.0 38.0 38.0 36.0 38.0 60-61 37.109245369588606 38.0 38.0 38.0 36.0 38.0 62-63 37.10630995716889 38.0 38.0 38.0 36.0 38.0 64-65 37.11072112026075 38.0 38.0 38.0 36.0 38.0 66-67 37.04438976794664 38.0 38.0 38.0 36.0 38.0 68-69 37.05810733452114 38.0 38.0 38.0 36.0 38.0 70-71 37.067211932376765 38.0 38.0 38.0 36.0 38.0 72-73 37.07776451636407 38.0 38.0 38.0 36.0 38.0 74-75 37.06303433348968 38.0 38.0 38.0 36.0 38.0 76-77 37.02331783931212 38.0 38.0 38.0 36.0 38.0 78-79 37.01774913679726 38.0 38.0 38.0 36.0 38.0 80-81 37.01286326914638 38.0 38.0 38.0 36.0 38.0 82-83 36.948285448779046 38.0 38.0 38.0 35.5 38.0 84-85 36.94267189949651 38.0 38.0 38.0 35.5 38.0 86-87 36.93347149224392 38.0 38.0 38.0 35.0 38.0 88-89 36.904505915357866 38.0 38.0 38.0 35.0 38.0 90-91 36.87448742072012 38.0 38.0 38.0 35.0 38.0 92-93 36.85401259320513 38.0 38.0 38.0 35.0 38.0 94-95 36.84897857973308 38.0 38.0 38.0 35.0 38.0 96-97 36.8183185604786 38.0 38.0 38.0 35.0 38.0 98-99 36.84019052646697 38.0 38.0 38.0 35.0 38.0 100 35.301379999491715 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 13.0 21 46.0 22 179.0 23 505.0 24 1257.0 25 2552.0 26 4862.0 27 8368.0 28 13677.0 29 20061.0 30 27374.0 31 35502.0 32 45732.0 33 60629.0 34 90294.0 35 166015.0 36 504789.0 37 2843088.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.170180614220115 19.21633967311451 14.609741099748282 25.003738612917093 2 14.421820111934883 20.0246042339677 43.16801083527583 22.385564818821585 3 18.61777917910475 25.57947223307205 29.8396630958973 25.963085491925895 4 12.757637489450838 17.95783890395373 38.46794779955178 30.81657580704365 5 14.027380241509166 36.946567639612354 35.26630950276971 13.759742616108769 6 30.495264249344046 37.27546099973124 18.67583559305904 13.553439157865677 7 27.324842063212362 32.16956152083636 22.56906499121034 17.936531424740938 8 24.45348276630166 36.941547963527874 20.725275219427818 17.87969405074265 9 25.331769216208954 17.83054305574873 21.468082703346557 35.36960502469576 10-11 24.6075240761443 26.919960741949957 28.31488166636514 20.157633515540603 12-13 25.301154420922845 24.135217001642896 28.83355538428235 21.73007319315191 14-15 22.418566213187734 25.581994840191292 26.607198320081736 25.392240626539238 16-17 21.954037022202655 28.874013450640373 27.241050074406242 21.93089945275073 18-19 21.92078166814294 27.864888620708044 29.086238558014383 21.128091153134633 20-21 22.62358150071701 26.96230363891391 29.15282863234512 21.261286228023966 22-23 22.4436232452816 26.81315345620469 29.005370011548443 21.73785328696527 24-25 22.219742605305168 26.921580001440702 29.07434941759289 21.78432797566123 26-27 22.107225151480602 27.115367920314874 29.030657498512124 21.746749429692393 28-29 22.091389405026415 27.035538667771053 29.10379244153225 21.769279485670282 30-31 22.314893220610415 26.973296517305663 29.000315057552957 21.711495204530966 32-33 22.103519375916285 27.169249445565207 28.924137867814366 21.803093310704146 34-35 22.27222532392386 27.12227851905387 28.933128857040284 21.672367299981985 36-37 22.23028466556122 27.03110837487287 28.895634889822837 21.84297206974307 38-39 22.08597632924754 27.190854650941343 28.993871109443457 21.729297910367663 40-41 22.368283049544807 27.046154712966906 28.813904991936756 21.771657245551527 42-43 22.189784607541224 27.154624926895877 28.710811709670587 21.944778755892308 44-45 22.241434870013187 27.26080431340245 28.59928593683977 21.898474879744594 46-47 22.366347645812812 27.21352238511279 28.360905620046484 22.059224349027915 48-49 22.276313016749963 27.331062914017178 28.29312207029432 22.09950199893854 50-51 22.27452754661944 27.472175895617923 28.188510197436102 22.064786360326544 52-53 22.452756186654153 27.39255361076451 28.142264835732117 22.012425366849225 54-55 22.441710993363152 27.329283150513533 28.095379956320482 22.133625899802833 56-57 22.321739491121097 27.455480089633067 28.174650257548308 22.048130161697532 58-59 22.39555275961851 27.390879669381984 28.140889165278786 22.072678405720715 60-61 22.40422262627164 27.432932134570763 28.18078763608781 21.982057603069784 62-63 22.387134253481054 27.471349321429265 28.195947070543397 21.945569354546286 64-65 22.40018179476629 27.37914096894861 28.15403974969084 22.06663748659426 66-67 22.431314735344525 27.441530958016003 27.99016391254419 22.136990394095278 68-69 22.325302031850633 27.434345254438952 28.269194467325647 21.97115824638477 70-71 22.520847473817383 27.215255254857208 28.235531250211608 22.028366021113797 72-73 22.39582320175712 27.117643386905478 28.232496628453386 22.25403678288401 74-75 22.300277730007593 27.34380026837095 28.29435871158546 22.061563290035995 76-77 22.399390209311274 27.40073771942349 28.05471848826605 22.145153582999182 78-79 22.384743147983823 27.271352644332676 28.00871249738949 22.335191710294016 80-81 22.376404469136503 27.346543818837898 28.0670789887972 22.209972723228397 82-83 22.49393637011442 27.33802568331805 28.016946734947602 22.151091211619928 84-85 22.46462997849873 27.348054475567494 27.982111163555707 22.205204382378067 86-87 22.372307293118045 27.37026912291126 28.058518131270443 22.19890545270025 88-89 22.451841385440368 27.373307418897745 27.947616040744457 22.227235154917434 90-91 22.44751482876395 27.44554422630677 27.9266495021278 22.180291442801487 92-93 22.462570747312906 27.438885322707495 27.903770869855567 22.194773060124028 94-95 22.371187452028387 27.47893711479272 27.917439099956905 22.232436333221983 96-97 22.516339795311588 27.54857315989152 27.9397969930185 21.995290051778387 98-99 23.559193570191926 29.45457399904931 28.17232792718931 18.81390450356945 100 22.476234815383126 30.349012762794565 22.12293844458989 25.051813977232424 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 730.0 1 611.0 2 650.0 3 869.0 4 1089.5 5 1530.0 6 2029.0 7 2829.0 8 3852.0 9 4515.0 10 4590.0 11 4492.5 12 4875.5 13 5932.0 14 8091.0 15 10731.5 16 12660.0 17 13740.5 18 13822.5 19 12863.0 20 11567.5 21 10553.0 22 10371.0 23 11631.5 24 14556.0 25 19156.5 26 25091.5 27 31894.5 28 39425.5 29 48099.0 30 56346.0 31 64727.0 32 74654.0 33 84179.0 34 93112.5 35 102095.0 36 111839.5 37 120367.0 38 127149.5 39 133245.5 40 138942.5 41 144223.5 42 146925.0 43 150060.0 44 153410.5 45 155564.5 46 156264.0 47 155110.0 48 154223.0 49 152807.0 50 151206.5 51 147678.0 52 142257.5 53 134796.5 54 125006.0 55 116427.5 56 106962.5 57 95826.0 58 84950.5 59 73680.0 60 61524.5 61 49678.0 62 39307.5 63 30231.0 64 22563.0 65 16532.0 66 12206.5 67 9244.0 68 7063.0 69 5317.5 70 3890.5 71 2787.5 72 1961.0 73 1254.5 74 770.5 75 463.0 76 271.0 77 158.0 78 94.0 79 62.5 80 44.0 81 27.5 82 15.0 83 10.0 84 5.5 85 3.5 86 3.0 87 1.5 88 1.0 89 1.0 90 1.0 91 1.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.010536090948164524 3 5.22882925467222E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 4.4449877207214215E-4 26-27 4.5760373320970183E-4 28-29 0.0025760806854623793 30-31 0.012323407016492696 32-33 0.0074115579186407364 34-35 7.080396061621474E-4 36-37 9.196694970590283E-5 38-39 7.512292482804758E-4 40-41 1.3226019177198766E-5 42-43 0.0014471253584954359 44-45 6.402198941929921E-4 46-47 0.0013144816985249637 48-49 0.002711586365712058 50-51 0.0018851261108681994 52-53 0.0 54-55 0.0015614258776754314 56-57 0.045771223770733414 58-59 0.06461349795921646 60-61 0.04327559305332654 62-63 0.01281441046351293 64-65 0.0 66-67 0.0 68-69 2.0021010620574107E-4 70-71 0.0012966694756369492 72-73 0.005109682529037368 74-75 0.009124247688231476 76-77 0.01719271665253829 78-79 0.012371475150637188 80-81 0.005077625510589694 82-83 0.035239131416584385 84-85 0.024743866718722685 86-87 0.007246302274893697 88-89 0.0023541127666477975 90-91 0.00320476443730746 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 25.0 20-21 110.0 22-23 237.0 24-25 222.0 26-27 487.0 28-29 1065.0 30-31 3423.0 32-33 4568.0 34-35 6634.0 36-37 11113.0 38-39 13376.0 40-41 13768.0 42-43 16403.0 44-45 20205.0 46-47 21854.0 48-49 20151.0 50-51 18173.0 52-53 17722.0 54-55 20360.0 56-57 20644.0 58-59 21478.0 60-61 21408.0 62-63 21285.0 64-65 22975.0 66-67 24593.0 68-69 25641.0 70-71 26225.0 72-73 25205.0 74-75 25168.0 76-77 26782.0 78-79 28417.0 80-81 28218.0 82-83 26849.0 84-85 26483.0 86-87 27940.0 88-89 29744.0 90-91 30634.0 92-93 30071.0 94-95 35664.0 96-97 121869.0 98-99 272758.0 100-101 2715001.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.93480417015415 #Duplication Level Percentage of deduplicated Percentage of total 1 92.6486661651279 83.32339648186763 2 5.576033214539409 10.029589103917539 3 1.0843654265105789 2.9256657684634377 4 0.33343655092978464 1.1995020364416722 5 0.1421335632976769 0.6391377090591391 6 0.07452771237939362 0.4021581130854203 7 0.04064599488587914 0.2558842713253839 8 0.027605572753274132 0.1986161423656522 9 0.018474852177343883 0.14953789913777712 >10 0.052762151014847956 0.764934469587533 >50 0.0010326916538024187 0.06435839907157664 >100 3.1610473016461594E-4 0.047219605677254944 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 2.6144146273361102E-5 3 0.0 0.0 0.0 2.6144146273361102E-5 2.6144146273361102E-5 4 0.0 0.0 0.0 2.6144146273361102E-5 5.2288292546722203E-5 5 0.0 2.6144146273361102E-5 0.0 2.6144146273361102E-5 5.2288292546722203E-5 6 0.0 2.6144146273361102E-5 0.0 2.6144146273361102E-5 5.2288292546722203E-5 7 0.0 2.6144146273361102E-5 0.0 2.6144146273361102E-5 5.2288292546722203E-5 8 0.0 5.2288292546722203E-5 0.0 2.6144146273361102E-5 7.843243882008331E-5 9 0.0 5.2288292546722203E-5 0.0 5.2288292546722203E-5 7.843243882008331E-5 10-11 0.0 6.536036568340276E-5 0.0 1.0457658509344441E-4 7.843243882008331E-5 12-13 0.0 7.843243882008331E-5 0.0 1.3072073136680552E-4 7.843243882008331E-5 14-15 2.6144146273361102E-5 7.843243882008331E-5 0.0 1.5686487764016662E-4 7.843243882008331E-5 16-17 2.6144146273361102E-5 7.843243882008331E-5 0.0 1.8300902391352772E-4 7.843243882008331E-5 18-19 2.6144146273361102E-5 9.150451195676386E-5 0.0 2.0915317018688881E-4 7.843243882008331E-5 20-21 2.6144146273361102E-5 1.0457658509344441E-4 0.0 2.0915317018688881E-4 7.843243882008331E-5 22-23 2.6144146273361102E-5 1.0457658509344441E-4 0.0 2.483693895969305E-4 7.843243882008331E-5 24-25 2.6144146273361102E-5 1.0457658509344441E-4 0.0 2.745135358702916E-4 7.843243882008331E-5 26-27 2.6144146273361102E-5 1.0457658509344441E-4 0.0 3.1372975528033323E-4 7.843243882008331E-5 28-29 2.6144146273361102E-5 1.0457658509344441E-4 0.0 4.5752255978381926E-4 7.843243882008331E-5 30-31 2.6144146273361102E-5 1.0457658509344441E-4 0.0 9.281171927043191E-4 7.843243882008331E-5 32-33 2.6144146273361102E-5 1.0457658509344441E-4 0.0 0.0015686487764016662 7.843243882008331E-5 34-35 2.6144146273361102E-5 1.4379280450348608E-4 0.0 0.0027320632855662354 1.0457658509344441E-4 36-37 5.2288292546722203E-5 1.5686487764016662E-4 0.0 0.004392216573924666 1.0457658509344441E-4 38-39 5.2288292546722203E-5 1.8300902391352772E-4 0.0 0.007019703274397456 1.1764865823012496E-4 40-41 6.536036568340276E-5 2.0915317018688881E-4 0.0 0.009790982779373732 1.3072073136680552E-4 42-43 7.843243882008331E-5 2.0915317018688881E-4 0.0 0.01256226228435001 1.3072073136680552E-4 44-45 7.843243882008331E-5 2.352973164602499E-4 0.0 0.01617015447007384 1.3072073136680552E-4 46-47 7.843243882008331E-5 2.6144146273361104E-4 0.0 0.019738830436387633 1.3072073136680552E-4 48-49 7.843243882008331E-5 2.745135358702916E-4 0.0 0.023176785671334618 1.5686487764016662E-4 50-51 7.843243882008331E-5 3.137297552803332E-4 0.0 0.02705919139292874 1.5686487764016662E-4 52-53 7.843243882008331E-5 3.398739015536943E-4 0.0 0.031242254796666515 1.5686487764016662E-4 54-55 7.843243882008331E-5 3.398739015536943E-4 0.0 0.035229237103354086 1.5686487764016662E-4 56-57 7.843243882008331E-5 3.398739015536943E-4 0.0 0.039882895140012364 1.5686487764016662E-4 58-59 7.843243882008331E-5 3.398739015536943E-4 0.0 0.044484264884123915 1.5686487764016662E-4 60-61 9.150451195676386E-5 3.5294597469037487E-4 0.0 0.048994130116278706 1.5686487764016662E-4 62-63 1.0457658509344441E-4 3.6601804782705543E-4 0.0 0.05341249083647673 1.5686487764016662E-4 64-65 1.1764865823012496E-4 3.6601804782705543E-4 0.0 0.05760862631335119 1.5686487764016662E-4 66-67 1.3072073136680552E-4 3.6601804782705543E-4 0.0 0.06223614020373611 1.5686487764016662E-4 68-69 1.3072073136680552E-4 3.79090120963736E-4 0.0 0.06686365409412101 1.5686487764016662E-4 70-71 1.3072073136680552E-4 3.921621941004165E-4 0.0 0.07119051030236229 1.8300902391352772E-4 72-73 1.5686487764016662E-4 3.921621941004165E-4 0.0 0.07468075382985599 2.352973164602499E-4 74-75 1.6993695077684715E-4 4.0523426723709707E-4 0.0 0.07725595223778206 2.352973164602499E-4 76-77 1.8300902391352772E-4 4.1830634037377763E-4 0.0 0.07973964613375137 2.352973164602499E-4 78-79 1.8300902391352772E-4 4.1830634037377763E-4 0.0 0.08136058320269976 2.352973164602499E-4 80-81 1.8300902391352772E-4 4.1830634037377763E-4 0.0 0.08192268234757702 2.352973164602499E-4 82-83 1.8300902391352772E-4 4.1830634037377763E-4 0.0 0.08227562832226738 2.352973164602499E-4 84-85 1.8300902391352772E-4 4.1830634037377763E-4 0.0 0.08235406076108748 2.352973164602499E-4 86-87 1.8300902391352772E-4 4.1830634037377763E-4 0.0 0.08239327698049752 2.352973164602499E-4 88 1.8300902391352772E-4 4.705946329204998E-4 0.0 0.0824063490536342 2.352973164602499E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4875 0.0 53.037575 1 GTATCAA 8905 0.0 38.46666 1 TCAACGC 10740 0.0 31.030117 4 ATCAACG 10855 0.0 30.944397 3 TATCAAC 11235 0.0 30.21518 2 CAACGCA 11125 0.0 29.956266 5 AACGCAG 11475 0.0 29.080885 6 ACGCAGA 13070 0.0 25.531992 7 CGCAGAG 13660 0.0 24.42922 8 TGGTATC 2300 0.0 23.515718 2 GTGGTAT 2625 0.0 21.609331 1 GCAGAGT 15740 0.0 21.312693 9 GTACATG 11315 0.0 21.102127 1 GAGTACT 9185 0.0 20.918032 12-13 TACATGG 11565 0.0 19.809477 2 GTACTTT 9870 0.0 19.39996 14-15 ACATGGG 11520 0.0 19.311523 3 CAGAGTA 15640 0.0 18.89083 10-11 AGAGTAC 14345 0.0 18.695961 10-11 AGTACTT 10200 0.0 17.263182 12-13 >>END_MODULE