##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139461_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4735457 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.775090133856143 31.0 18.0 33.0 18.0 33.0 2 31.519346073673564 33.0 32.0 33.0 27.0 33.0 3 32.508279559924205 33.0 33.0 33.0 31.0 34.0 4 32.663003803012046 33.0 33.0 34.0 31.0 34.0 5 33.193020652494575 33.0 33.0 34.0 33.0 34.0 6 37.07577895860948 38.0 38.0 38.0 36.0 38.0 7 37.19157432957368 38.0 38.0 38.0 36.0 38.0 8 37.13571150577442 38.0 38.0 38.0 36.0 38.0 9 37.35347823874232 38.0 38.0 38.0 37.0 38.0 10-11 37.413791213815266 38.0 38.0 38.0 37.0 38.0 12-13 37.53099721948695 38.0 38.0 38.0 37.5 38.0 14-15 37.51232183081802 38.0 38.0 38.0 37.0 38.0 16-17 37.530052854455235 38.0 38.0 38.0 37.5 38.0 18-19 37.54030139012983 38.0 38.0 38.0 38.0 38.0 20-21 37.546155746099956 38.0 38.0 38.0 38.0 38.0 22-23 37.554147292962284 38.0 38.0 38.0 38.0 38.0 24-25 37.56385328266116 38.0 38.0 38.0 38.0 38.0 26-27 37.53605437497326 38.0 38.0 38.0 38.0 38.0 28-29 37.51329961207969 38.0 38.0 38.0 38.0 38.0 30-31 37.508666949165054 38.0 38.0 38.0 38.0 38.0 32-33 37.42277834058095 38.0 38.0 38.0 37.0 38.0 34-35 37.46653800187974 38.0 38.0 38.0 37.0 38.0 36-37 37.45117728016301 38.0 38.0 38.0 37.0 38.0 38-39 37.438046969824256 38.0 38.0 38.0 37.0 38.0 40-41 37.423554147153894 38.0 38.0 38.0 37.0 38.0 42-43 37.387076400004815 38.0 38.0 38.0 37.0 38.0 44-45 37.34736085894207 38.0 38.0 38.0 37.0 38.0 46-47 37.314131171609745 38.0 38.0 38.0 37.0 38.0 48-49 37.198916970613 38.0 38.0 38.0 37.0 38.0 50-51 37.18761767539038 38.0 38.0 38.0 37.0 38.0 52-53 37.193267421348956 38.0 38.0 38.0 37.0 38.0 54-55 37.174554443798456 38.0 38.0 38.0 37.0 38.0 56-57 37.11780567102706 38.0 38.0 38.0 36.0 38.0 58-59 37.100358426031775 38.0 38.0 38.0 36.0 38.0 60-61 37.11388829295922 38.0 38.0 38.0 36.0 38.0 62-63 37.11443757705909 38.0 38.0 38.0 36.0 38.0 64-65 37.11836059266328 38.0 38.0 38.0 36.0 38.0 66-67 37.0524637012163 38.0 38.0 38.0 36.0 38.0 68-69 37.06751138631335 38.0 38.0 38.0 36.0 38.0 70-71 37.08127604600819 38.0 38.0 38.0 36.0 38.0 72-73 37.09383575513009 38.0 38.0 38.0 36.0 38.0 74-75 37.0779202198043 38.0 38.0 38.0 36.0 38.0 76-77 37.043317651784825 38.0 38.0 38.0 36.0 38.0 78-79 37.04175975038902 38.0 38.0 38.0 36.0 38.0 80-81 37.03889651721106 38.0 38.0 38.0 36.0 38.0 82-83 36.9798083137657 38.0 38.0 38.0 36.0 38.0 84-85 36.9737497417628 38.0 38.0 38.0 36.0 38.0 86-87 36.96540870272875 38.0 38.0 38.0 36.0 38.0 88-89 36.94351148977114 38.0 38.0 38.0 36.0 38.0 90-91 36.91581646982688 38.0 38.0 38.0 35.0 38.0 92-93 36.89669635540385 38.0 38.0 38.0 35.0 38.0 94-95 36.89485709634023 38.0 38.0 38.0 35.0 38.0 96-97 36.867655231434526 38.0 38.0 38.0 35.0 38.0 98-99 36.888794477039276 38.0 38.0 38.0 35.0 38.0 100 35.38335949466532 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 1.0 20 6.0 21 53.0 22 191.0 23 708.0 24 1658.0 25 3415.0 26 6338.0 27 10876.0 28 17627.0 29 26237.0 30 34474.0 31 43412.0 32 55675.0 33 73882.0 34 108707.0 35 196005.0 36 599174.0 37 3557017.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.91533298686906 19.518982011662235 14.745292798561998 24.82039220290671 2 14.146837414919435 20.182119079419223 43.65011983296881 22.02092367269253 3 18.307254887385714 26.162316786387624 30.05011555381361 25.48031277241305 4 12.460465800872017 18.209583573454474 39.097071306950944 30.232879318722567 5 13.641323318953166 37.28827017117883 35.49739761125484 13.573008898613164 6 29.84351879871362 37.87131843874836 18.937285250399274 13.347877512138744 7 26.861990299985834 32.57275908111931 22.935209843527247 17.630040775367615 8 24.12385964015722 37.17824911090947 20.930566997018452 17.76732425191486 9 25.291349916174934 17.953663183933465 21.71792500702678 35.03706189286483 10-11 24.332413957090097 27.183057516940817 28.54473179674105 19.939796729228036 12-13 25.160158776650277 24.44383931688114 29.049688340533976 21.346313565934608 14-15 22.2024928111479 25.803496895864537 26.98827167050614 25.00573862248142 16-17 21.616298067958382 28.988986701811463 27.59689297147034 21.79782225875982 18-19 21.57066361282554 28.007212397874166 29.583776180419335 20.838347808880958 20-21 22.401508719473185 27.110101318651314 29.551433440824987 20.936956521050515 22-23 22.086818719043602 27.032894255424043 29.440802620634848 21.439484404897502 24-25 21.854183230498098 27.137635816377724 29.517864333099357 21.490316620024817 26-27 21.809456862585233 27.24653397212139 29.45592476483731 21.488084400456067 28-29 21.764668102044958 27.316987683085202 29.474534077769448 21.44381013710039 30-31 22.002154773271002 27.195915233181477 29.386365308488603 21.415564685058914 32-33 21.799373767339272 27.315089645888023 29.374672238588612 21.51086434818409 34-35 21.961049064068565 27.29733852266453 29.37258340098777 21.369029012279135 36-37 21.943917566963027 27.215398494706612 29.29194042157991 21.548743516750456 38-39 21.758096922924445 27.411825717840806 29.390641464682115 21.439435894552634 40-41 22.061964861541114 27.260922810587967 29.200127501832252 21.47698482603867 42-43 21.90374951265167 27.35002057094607 29.084280566164132 21.661949350238128 44-45 21.983135385002363 27.472438548886117 28.945278558847896 21.59914750726362 46-47 22.042901324858565 27.468503767811285 28.64314290632054 21.84545200100961 48-49 22.01562257150185 27.620921702061757 28.563482417604746 21.799973308831646 50-51 22.003966461650627 27.7469217464682 28.461855617213565 21.787256174667608 52-53 22.145017249868015 27.671371270510015 28.344446503606264 21.83916497601571 54-55 22.143239580819856 27.595589825180443 28.395665391852138 21.86550520214756 56-57 22.13720841217436 27.737389831073937 28.34158599972679 21.78381575702491 58-59 22.110717102896533 27.71907384572109 28.361383290078702 21.80882576130367 60-61 22.18006504739682 27.717677610196816 28.386885137224176 21.71537220518219 62-63 22.11264317480181 27.751199310277936 28.41578053343922 21.720376981481035 64-65 22.099301123517918 27.658544814084397 28.414284227997648 21.827869834400033 66-67 22.1952705543144 27.690282141469176 28.19431257545134 21.920134728765085 68-69 22.0954052608685 27.731530562862837 28.458835558786035 21.714228617482625 70-71 22.241584672629926 27.51402356756901 28.48376940583559 21.760622353965477 72-73 22.157954588842678 27.353231709747394 28.50127573080877 21.98753797060116 74-75 22.03284745740214 27.579254250132283 28.553105762634555 21.83479252983102 76-77 22.124024855736874 27.619731124172457 28.32809066476453 21.928153355326135 78-79 22.113842275937134 27.53719737487051 28.257680349987808 22.091279999204552 80-81 22.04365279214407 27.58374871167979 28.34661267956108 22.02598581661506 82-83 22.15958633630976 27.607753479896136 28.34555412724944 21.88710605654466 84-85 22.231071816221863 27.58735167571521 28.237342577962444 21.94423393010049 86-87 22.07278005704446 27.612429114466707 28.28826647767252 22.02652435081631 88-89 22.174538689443754 27.635695068647326 28.19596158935973 21.99380465254919 90-91 22.215829294824207 27.742549633533436 28.131562293476115 21.910058778166242 92-93 22.228951467373083 27.670319598070055 28.179745304188536 21.920983630368333 94-95 22.08226235042062 27.749438284558597 28.14370218331483 22.024597181705953 96-97 22.245247119653918 27.847653388044396 28.1867106549943 21.720388837307382 98-99 23.247914639247718 29.73882805402749 28.458222340685317 18.55503496603948 100 22.180431446135362 30.64470155721923 22.390395653024502 24.784471343620908 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 913.0 1 836.5 2 943.5 3 1247.5 4 1703.0 5 2491.5 6 3177.0 7 4053.0 8 5209.0 9 5851.5 10 5828.5 11 5844.5 12 6544.5 13 8151.5 14 11455.0 15 15465.5 16 18488.5 17 20135.0 18 20216.0 19 18862.0 20 16805.5 21 15198.0 22 15049.5 23 16806.0 24 20580.5 25 26504.0 26 34597.5 27 44191.5 28 53976.0 29 64919.5 30 76304.0 31 87044.0 32 99136.5 33 111073.0 34 123114.5 35 135129.0 36 147073.0 37 157831.5 38 165708.5 39 172581.0 40 180065.0 41 186607.5 42 189441.0 43 192214.0 44 195140.5 45 197159.0 46 197419.0 47 195981.5 48 193928.0 49 190348.5 50 185974.0 51 179975.5 52 171945.0 53 161614.0 54 149288.0 55 136928.5 56 124593.0 57 111026.0 58 97218.5 59 83988.5 60 70384.5 61 56673.0 62 44448.0 63 33986.0 64 25148.5 65 18434.5 66 13502.5 67 10153.0 68 7665.0 69 5562.0 70 4014.0 71 2820.0 72 1884.5 73 1199.5 74 740.0 75 464.0 76 296.5 77 177.0 78 106.0 79 63.5 80 40.0 81 28.0 82 17.0 83 10.0 84 9.0 85 8.5 86 7.0 87 7.0 88 5.5 89 4.0 90 3.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.011255513459419017 3 2.1117286040185774E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 3.167995975377913E-4 26-27 5.069273737824765E-4 28-29 0.002820394430576625 30-31 0.013465519497416924 32-33 0.007863009651077094 34-35 7.101942985601712E-4 36-37 1.4876518520627992E-4 38-39 7.041240009307239E-4 40-41 3.215411682555266E-5 42-43 0.0016693421015078467 44-45 7.257878264366157E-4 46-47 0.0016361128053968164 48-49 0.00353672931839867 50-51 0.0019569882724437253 52-53 0.0 54-55 0.0017234992406530943 56-57 0.04840827791691418 58-59 0.0687990710934322 60-61 0.04685194032838172 62-63 0.013644380729762687 64-65 0.0 66-67 0.0 68-69 2.000737919220795E-4 70-71 0.001519117620530115 72-73 0.005720921709904507 74-75 0.010388568665181138 76-77 0.019051769350958776 78-79 0.013623892920620204 80-81 0.006689711483893219 82-83 0.03761074256834609 84-85 0.026793965756706253 86-87 0.008540156362499218 88-89 0.0027108728226776973 90-91 0.0035942704474412556 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 24.0 20-21 163.0 22-23 343.0 24-25 374.0 26-27 814.0 28-29 1857.0 30-31 5577.0 32-33 7129.0 34-35 9965.0 36-37 17207.0 38-39 21679.0 40-41 21857.0 42-43 25260.0 44-45 30942.0 46-47 32238.0 48-49 30723.0 50-51 27827.0 52-53 26765.0 54-55 29019.0 56-57 30198.0 58-59 30954.0 60-61 30992.0 62-63 30074.0 64-65 32013.0 66-67 34162.0 68-69 35440.0 70-71 35671.0 72-73 34001.0 74-75 33506.0 76-77 35605.0 78-79 37432.0 80-81 37786.0 82-83 35558.0 84-85 34868.0 86-87 36368.0 88-89 37888.0 90-91 39302.0 92-93 38963.0 94-95 46005.0 96-97 147113.0 98-99 325524.0 100-101 3266271.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.85087475419485 #Duplication Level Percentage of deduplicated Percentage of total 1 91.49937988207468 80.38300562106639 2 6.205115656357375 10.902496767238906 3 1.341511104121915 3.5355877196872796 4 0.4317809074190769 1.517293216757037 5 0.20147038294059794 0.8849674689197072 6 0.102628697698396 0.5409612520612748 7 0.06456488166182789 0.39704569326748573 8 0.039290525294678046 0.27613656133514286 9 0.02354524057291181 0.18616229825654365 >10 0.08882516377477974 1.2056922462562247 >50 0.0012069430577387398 0.07367390901324562 >100 6.806150258955439E-4 0.09697724614074933 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.1117286040185774E-5 2 0.0 0.0 0.0 0.0 2.1117286040185774E-5 3 0.0 0.0 0.0 0.0 2.1117286040185774E-5 4 0.0 2.1117286040185774E-5 0.0 0.0 2.1117286040185774E-5 5 0.0 4.223457208037155E-5 0.0 0.0 2.1117286040185774E-5 6 2.1117286040185774E-5 4.223457208037155E-5 0.0 0.0 2.1117286040185774E-5 7 2.1117286040185774E-5 4.223457208037155E-5 0.0 0.0 2.1117286040185774E-5 8 2.1117286040185774E-5 4.223457208037155E-5 0.0 0.0 2.1117286040185774E-5 9 2.1117286040185774E-5 6.335185812055732E-5 0.0 2.1117286040185774E-5 2.1117286040185774E-5 10-11 2.1117286040185774E-5 6.335185812055732E-5 0.0 4.223457208037155E-5 2.1117286040185774E-5 12-13 2.1117286040185774E-5 6.335185812055732E-5 0.0 4.223457208037155E-5 2.1117286040185774E-5 14-15 2.1117286040185774E-5 9.502778718083597E-5 0.0 4.223457208037155E-5 2.1117286040185774E-5 16-17 6.335185812055732E-5 1.0558643020092886E-4 0.0 4.223457208037155E-5 2.1117286040185774E-5 18-19 6.335185812055732E-5 1.0558643020092886E-4 0.0 4.223457208037155E-5 2.1117286040185774E-5 20-21 6.335185812055732E-5 1.0558643020092886E-4 0.0 6.335185812055732E-5 2.1117286040185774E-5 22-23 6.335185812055732E-5 1.2670371624111463E-4 0.0 6.335185812055732E-5 3.167592906027866E-5 24-25 6.335185812055732E-5 1.5837964530139332E-4 0.0 9.502778718083597E-5 4.223457208037155E-5 26-27 6.335185812055732E-5 1.689382883214862E-4 0.0 1.0558643020092886E-4 4.223457208037155E-5 28-29 6.335185812055732E-5 1.689382883214862E-4 0.0 2.2173150342195063E-4 4.223457208037155E-5 30-31 6.335185812055732E-5 2.322901464420435E-4 0.0 6.651945102658518E-4 4.223457208037155E-5 32-33 6.335185812055732E-5 2.322901464420435E-4 0.0 0.0017527347413354192 4.223457208037155E-5 34-35 6.335185812055732E-5 2.5340743248222926E-4 0.0 0.0031359169769675874 4.223457208037155E-5 36-37 1.0558643020092886E-4 2.7452471852241507E-4 0.0 0.005310997439106722 4.223457208037155E-5 38-39 1.0558643020092886E-4 2.7452471852241507E-4 0.0 0.008499707631174774 7.39105011406502E-5 40-41 1.0558643020092886E-4 3.167592906027866E-4 0.0 0.01203685304290589 8.44691441607431E-5 42-43 1.0558643020092886E-4 3.167592906027866E-4 0.0 0.015531763882556636 8.44691441607431E-5 44-45 1.0558643020092886E-4 3.378765766429724E-4 0.0 0.01909002658032794 8.44691441607431E-5 46-47 1.0558643020092886E-4 3.5899386268315814E-4 0.0 0.023651360365008065 8.44691441607431E-5 48-49 1.0558643020092886E-4 3.5899386268315814E-4 0.0 0.02812822500552745 8.44691441607431E-5 50-51 1.0558643020092886E-4 4.012284347635297E-4 0.0 0.03284793843550897 8.44691441607431E-5 52-53 1.0558643020092886E-4 4.117870777836226E-4 0.0 0.03744094814924938 8.44691441607431E-5 54-55 1.0558643020092886E-4 4.540216498639941E-4 0.0 0.04183334364560802 8.44691441607431E-5 56-57 1.0558643020092886E-4 4.64580292884087E-4 0.0 0.04661640893371009 8.44691441607431E-5 58-59 1.0558643020092886E-4 4.64580292884087E-4 0.0 0.05149450200899301 8.44691441607431E-5 60-61 1.1614507322102175E-4 4.64580292884087E-4 0.0 0.05663656115977824 8.44691441607431E-5 62-63 1.2670371624111463E-4 4.64580292884087E-4 0.0 0.06186308945472423 1.0558643020092886E-4 64-65 1.2670371624111463E-4 4.856975789242728E-4 0.0 0.06759643261463466 1.0558643020092886E-4 66-67 1.2670371624111463E-4 4.856975789242728E-4 0.0 0.07232670468763627 1.0558643020092886E-4 68-69 1.2670371624111463E-4 4.856975789242728E-4 0.0 0.07726814962103976 1.0558643020092886E-4 70-71 1.2670371624111463E-4 5.068148649644585E-4 0.0 0.08158663461625773 1.0558643020092886E-4 72-73 1.9005557436167195E-4 5.4904943704483E-4 0.0 0.08539830474651126 1.2670371624111463E-4 74-75 1.9005557436167195E-4 5.807253661051087E-4 0.0 0.08841807665025783 1.2670371624111463E-4 76-77 1.9005557436167195E-4 5.912840091252017E-4 0.0 0.09084656454487919 1.2670371624111463E-4 78-79 1.9005557436167195E-4 5.912840091252017E-4 0.0 0.09245147828393332 1.2670371624111463E-4 80-81 1.9005557436167195E-4 5.912840091252017E-4 0.0 0.09301108636399824 1.2670371624111463E-4 82-83 1.9005557436167195E-4 5.912840091252017E-4 0.0 0.09363404630218372 1.2670371624111463E-4 84-85 1.9005557436167195E-4 5.912840091252017E-4 0.0 0.09385577780560567 1.2670371624111463E-4 86-87 1.9005557436167195E-4 6.124012951653874E-4 0.0 0.09396136423580659 1.2670371624111463E-4 88 2.1117286040185773E-4 6.335185812055732E-4 0.0 0.09397192287882669 1.2670371624111463E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6745 0.0 49.152924 1 GTATCAA 12265 0.0 38.89928 1 TCAACGC 14440 0.0 32.46327 4 ATCAACG 14575 0.0 32.281815 3 CAACGCA 14730 0.0 31.765156 5 TATCAAC 15145 0.0 31.502127 2 AACGCAG 15270 0.0 30.641829 6 ACGCAGA 17490 0.0 26.926352 7 CGCAGAG 17770 0.0 26.453175 8 TGGTATC 3130 0.0 23.322319 2 GCAGAGT 20470 0.0 22.963995 9 GTGGTAT 3600 0.0 22.570745 1 GAGTACT 12440 0.0 20.377855 12-13 CAGAGTA 20420 0.0 19.520384 10-11 GTACATG 14435 0.0 19.204838 1 TACATGG 14410 0.0 18.846159 2 AGAGTAC 18930 0.0 18.842154 10-11 ACATGGG 14080 0.0 18.729406 3 GTACTTT 13540 0.0 18.513977 14-15 CATGGGG 9955 0.0 17.107353 4 >>END_MODULE