##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139460_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5294793 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.624959842622744 31.0 18.0 33.0 18.0 33.0 2 31.47862324362822 33.0 32.0 33.0 27.0 33.0 3 32.49247458776953 33.0 33.0 33.0 31.0 34.0 4 32.63557083345846 33.0 33.0 34.0 31.0 34.0 5 33.18633854052462 33.0 33.0 34.0 33.0 34.0 6 37.06318943913388 38.0 38.0 38.0 36.0 38.0 7 37.18449918627603 38.0 38.0 38.0 36.0 38.0 8 37.1381702740787 38.0 38.0 38.0 36.0 38.0 9 37.36882631672287 38.0 38.0 38.0 37.0 38.0 10-11 37.4156264465863 38.0 38.0 38.0 37.0 38.0 12-13 37.538351263212746 38.0 38.0 38.0 37.5 38.0 14-15 37.51913823637676 38.0 38.0 38.0 37.0 38.0 16-17 37.538915685655695 38.0 38.0 38.0 37.5 38.0 18-19 37.54942931668906 38.0 38.0 38.0 38.0 38.0 20-21 37.5562742069675 38.0 38.0 38.0 38.0 38.0 22-23 37.5666093164928 38.0 38.0 38.0 38.0 38.0 24-25 37.574375768835395 38.0 38.0 38.0 38.0 38.0 26-27 37.55134324188934 38.0 38.0 38.0 38.0 38.0 28-29 37.52968886273574 38.0 38.0 38.0 38.0 38.0 30-31 37.52350317698988 38.0 38.0 38.0 38.0 38.0 32-33 37.43257317688041 38.0 38.0 38.0 37.0 38.0 34-35 37.48102566675168 38.0 38.0 38.0 37.0 38.0 36-37 37.468530308675966 38.0 38.0 38.0 37.5 38.0 38-39 37.454251261306936 38.0 38.0 38.0 37.5 38.0 40-41 37.43612600432235 38.0 38.0 38.0 37.0 38.0 42-43 37.39780541669201 38.0 38.0 38.0 37.0 38.0 44-45 37.35809671477226 38.0 38.0 38.0 37.0 38.0 46-47 37.322291263984695 38.0 38.0 38.0 37.0 38.0 48-49 37.204470663164244 38.0 38.0 38.0 37.0 38.0 50-51 37.1914973492742 38.0 38.0 38.0 37.0 38.0 52-53 37.19814179426838 38.0 38.0 38.0 37.0 38.0 54-55 37.18078287046036 38.0 38.0 38.0 37.0 38.0 56-57 37.12517589341888 38.0 38.0 38.0 36.0 38.0 58-59 37.10574438419492 38.0 38.0 38.0 36.0 38.0 60-61 37.12149719930909 38.0 38.0 38.0 36.0 38.0 62-63 37.1250889907612 38.0 38.0 38.0 36.0 38.0 64-65 37.131655084910825 38.0 38.0 38.0 36.0 38.0 66-67 37.06613644115029 38.0 38.0 38.0 36.0 38.0 68-69 37.08030508323647 38.0 38.0 38.0 36.0 38.0 70-71 37.09661022853072 38.0 38.0 38.0 36.0 38.0 72-73 37.10964976139857 38.0 38.0 38.0 36.0 38.0 74-75 37.09475271728214 38.0 38.0 38.0 36.0 38.0 76-77 37.060747538433475 38.0 38.0 38.0 36.0 38.0 78-79 37.05915748503273 38.0 38.0 38.0 36.0 38.0 80-81 37.05753120111654 38.0 38.0 38.0 36.0 38.0 82-83 36.996060564040576 38.0 38.0 38.0 36.0 38.0 84-85 36.99319063702637 38.0 38.0 38.0 36.0 38.0 86-87 36.983644167172926 38.0 38.0 38.0 36.0 38.0 88-89 36.96161486412179 38.0 38.0 38.0 36.0 38.0 90-91 36.93585006528356 38.0 38.0 38.0 35.0 38.0 92-93 36.91987827298901 38.0 38.0 38.0 35.0 38.0 94-95 36.91576336287365 38.0 38.0 38.0 35.0 38.0 96-97 36.88676721887664 38.0 38.0 38.0 35.0 38.0 98-99 36.90892880044825 38.0 38.0 38.0 35.0 38.0 100 35.418957432756464 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 10.0 21 66.0 22 216.0 23 723.0 24 1720.0 25 3462.0 26 6596.0 27 11345.0 28 18541.0 29 27958.0 30 37381.0 31 47658.0 32 60542.0 33 80215.0 34 118691.0 35 217494.0 36 682431.0 37 3979739.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.393138504187036 19.13732982573634 14.515298331776144 24.954233338300476 2 14.433912103168044 20.1053779790434 43.095683544961304 22.365026372827252 3 18.48892269989076 25.859656054477682 30.029904857452376 25.621516388179177 4 12.754606270726732 17.944761957644047 38.570780765178164 30.729851006451053 5 13.905019516343698 37.00813232925253 35.23899801182029 13.847850142583479 6 30.253080715336743 37.221530662294064 18.825778458194684 13.6996101641745 7 27.077659126617416 32.35299283654715 22.800494750219695 17.768853286615737 8 24.469700704069073 36.55298705728439 20.92217769419881 18.055134544447725 9 25.562547959854143 17.503498248184584 21.49092514098285 35.44302865097843 10-11 24.54449116329949 26.81001882415422 28.370948590435923 20.274541422110364 12-13 25.38692258601989 24.1238514895672 28.870665954268652 21.61855997014425 14-15 22.49476986163576 25.453138583510253 26.76934679032778 25.282744764526203 16-17 21.88746566674089 28.61889029467252 27.407936438686082 22.085707599900505 18-19 21.86023136315244 27.64033457020888 29.407721888277788 21.09171217836089 20-21 22.654419542264545 26.662964249704824 29.438747647547153 21.243868560483474 22-23 22.464235237633126 26.50387843899937 29.29877399813052 21.733112325236988 24-25 22.18308242961212 26.643759530604562 29.399104177476598 21.774053862306715 26-27 22.10323807444033 26.78378777125398 29.363407837639688 21.749566316666 28-29 22.049492499690576 26.796422602305505 29.41331584820058 21.74076904980334 30-31 22.29953332510707 26.658695702534587 29.28793193193761 21.75383904042073 32-33 22.08695983169077 26.869321639532178 29.195163315875135 21.848555212901914 34-35 22.26357565759204 26.790110339423457 29.275607597302372 21.670706405682132 36-37 22.216997898515263 26.710500877965465 29.217668836145844 21.85483238737343 38-39 22.06753310495978 26.88314053842159 29.29320913267423 21.7561172239444 40-41 22.32456632805708 26.7338929773705 29.117363407517015 21.8241772870554 42-43 22.206356000487798 26.828247865422426 28.933245648024336 22.03215048606544 44-45 22.253125521681444 26.956046704566855 28.81890251924889 21.971925254502807 46-47 22.369464054785894 26.93127050730841 28.562455793508 22.136809644397694 48-49 22.31050033692556 27.10551837699553 28.403485872311624 22.180495413767282 50-51 22.306454688195974 27.224331759799465 28.337301198149117 22.131912353855444 52-53 22.45818300508367 27.153144365819372 28.21413789375885 22.174534735338113 54-55 22.41750999136192 27.079474532771847 28.23326470783029 22.269750768035937 56-57 22.406116012312427 27.181659427353033 28.246121991858043 22.166102568476497 58-59 22.377971035700714 27.140252924373563 28.29078056292141 22.190995477004314 60-61 22.446686028484354 27.129779356810463 28.323524773202784 22.1000098415024 62-63 22.39828518405242 27.14627255620584 28.32824106953091 22.127201190210826 64-65 22.384761773454994 27.070308583174572 28.319201427186734 22.225728216183697 66-67 22.43191951487715 26.988670196763948 28.240711539905345 22.33869874845356 68-69 22.349349533595298 27.036975159954718 28.45369796738741 22.15997733906258 70-71 22.508405412254998 26.89336498858471 28.40525151404581 22.192978085114476 72-73 22.436591779923756 26.807303755048533 28.355074355137933 22.401030109889778 74-75 22.291886753913097 27.04384099779501 28.41219068233617 22.252081565955724 76-77 22.408325312059464 27.094487745386065 28.148751608105865 22.34843533444861 78-79 22.435264808289997 27.06695929677249 28.04924876265516 22.44852713228235 80-81 22.373138388112604 27.142869160686793 28.1194684433826 22.364524007817998 82-83 22.489356682951637 27.14160852036422 28.07421168524833 22.294823111435818 84-85 22.520084551122917 27.184965416102315 27.990131432991493 22.30481859978327 86-87 22.387473432906525 27.203861097718306 28.01958759352373 22.389077875851438 88-89 22.482268337698848 27.202492394886917 27.940112292075515 22.375126975338716 90-91 22.491379526683673 27.254327261408147 27.942280324466996 22.312012887441192 92-93 22.552007336538207 27.218761569772433 27.927502979783913 22.301728113905448 94-95 22.42760849319835 27.280008138983984 27.92391494761733 22.368468420200333 96-97 22.553870532668522 27.36877543386068 27.934974429939725 22.142379603531076 98-99 23.625145437445976 29.265000173084765 28.138733648444497 18.971120741024762 100 22.493583956793525 30.19654837252744 22.057706146616844 25.252161524062185 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1128.0 1 1015.0 2 1223.5 3 1629.0 4 2032.0 5 2906.0 6 3826.0 7 5122.0 8 6657.0 9 7452.5 10 7422.0 11 7273.5 12 7958.5 13 9798.0 14 13499.5 15 17883.0 16 21424.5 17 23642.5 18 23582.0 19 21602.0 20 18875.5 21 16581.5 22 15942.0 23 17543.5 24 21364.0 25 27562.5 26 36164.0 27 45921.5 28 55996.5 29 67421.5 30 79250.0 31 91201.0 32 104763.0 33 118217.5 34 131475.0 35 143473.0 36 155072.5 37 165892.5 38 174844.0 39 183665.5 40 192447.5 41 200417.5 42 204595.5 43 207817.5 44 211359.5 45 214938.5 46 216425.5 47 215867.0 48 215654.5 49 215190.5 50 214715.5 51 210403.0 52 202128.5 53 191676.0 54 179646.5 55 167842.5 56 155072.5 57 139870.5 58 124194.0 59 108498.5 60 91452.5 61 74346.5 62 59177.0 63 45853.5 64 34434.0 65 25624.0 66 19082.5 67 14482.5 68 11023.0 69 8240.0 70 6048.5 71 4247.5 72 2883.5 73 1905.0 74 1208.5 75 749.0 76 465.0 77 276.0 78 161.5 79 102.0 80 68.0 81 50.0 82 37.5 83 25.0 84 15.0 85 11.0 86 11.0 87 9.5 88 6.0 89 4.0 90 3.0 91 1.5 92 1.0 93 1.0 94 1.5 95 2.0 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.009783196434685927 3 1.8886479603640787E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 3.5888683127105627E-4 26-27 3.872579295547601E-4 28-29 0.002853220151821545 30-31 0.013292628518965774 32-33 0.008057271578717743 34-35 7.779006396999506E-4 36-37 1.3319787743473828E-4 38-39 8.122912471222193E-4 40-41 9.60476396292561E-6 42-43 0.0017572800394712131 44-45 6.413178966172229E-4 46-47 0.001449051165213373 48-49 0.003235959241909461 50-51 0.00224544212507053 52-53 0.0 54-55 0.00145945331697001 56-57 0.04685296956290396 58-59 0.06459291248778608 60-61 0.044750565247281084 62-63 0.013569464827148964 64-65 0.0 66-67 0.0 68-69 3.08007668328846E-4 70-71 0.0016395308241439238 72-73 0.005351804374359473 74-75 0.009595946323329524 76-77 0.017887871429108915 78-79 0.013360505988905116 80-81 0.0064603678304637965 82-83 0.03691251032819741 84-85 0.026535257880748654 86-87 0.008136980116221468 88-89 0.002180086830410229 90-91 0.003310585721549816 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 29.0 20-21 142.0 22-23 406.0 24-25 395.0 26-27 1086.0 28-29 2386.0 30-31 7339.0 32-33 9471.0 34-35 13336.0 36-37 21519.0 38-39 26521.0 40-41 26491.0 42-43 30944.0 44-45 37859.0 46-47 39486.0 48-49 36616.0 50-51 32922.0 52-53 31686.0 54-55 34774.0 56-57 36277.0 58-59 36637.0 60-61 36271.0 62-63 35857.0 64-65 38032.0 66-67 40331.0 68-69 41358.0 70-71 41975.0 72-73 39665.0 74-75 39673.0 76-77 42198.0 78-79 44016.0 80-81 44134.0 82-83 41439.0 84-85 40910.0 86-87 42902.0 88-89 44247.0 90-91 45623.0 92-93 44806.0 94-95 52771.0 96-97 165850.0 98-99 363987.0 100-101 3582426.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.50089346817224 #Duplication Level Percentage of deduplicated Percentage of total 1 91.44997000380539 80.01954082970522 2 6.180617174214888 10.816190498570652 3 1.3680928886995254 3.5912805032598354 4 0.45919862082214125 1.607211584051592 5 0.20792783510281068 0.909693567419936 6 0.1052209641770021 0.5524157026242136 7 0.059403128842880445 0.3638478793989894 8 0.03942284659600765 0.2759627440167489 9 0.027783682455025386 0.21879873347856327 >10 0.09906031091019578 1.3530085433565435 >50 0.0025687937963347466 0.15331358157365096 >100 7.009121393911483E-4 0.11890942291981207 >500 3.283843838940545E-5 0.019826409624290275 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.8886479603640783E-5 0.0 2 0.0 7.554591841456313E-5 0.0 1.8886479603640783E-5 0.0 3 0.0 7.554591841456313E-5 0.0 1.8886479603640783E-5 0.0 4 0.0 9.443239801820392E-5 0.0 1.8886479603640783E-5 0.0 5 0.0 9.443239801820392E-5 0.0 1.8886479603640783E-5 0.0 6 0.0 9.443239801820392E-5 0.0 1.8886479603640783E-5 1.8886479603640783E-5 7 0.0 9.443239801820392E-5 0.0 1.8886479603640783E-5 1.8886479603640783E-5 8 0.0 1.3220535722548548E-4 0.0 1.8886479603640783E-5 1.8886479603640783E-5 9 0.0 1.3220535722548548E-4 0.0 1.8886479603640783E-5 1.8886479603640783E-5 10-11 0.0 1.3220535722548548E-4 0.0 1.8886479603640783E-5 5.6659438810922346E-5 12-13 1.8886479603640783E-5 1.3220535722548548E-4 0.0 3.7772959207281566E-5 7.554591841456313E-5 14-15 1.8886479603640783E-5 1.6997831643276705E-4 0.0 3.7772959207281566E-5 9.443239801820392E-5 16-17 1.8886479603640783E-5 1.9830803583822823E-4 0.0 3.7772959207281566E-5 9.443239801820392E-5 18-19 1.8886479603640783E-5 2.360809950455098E-4 0.0 4.721619900910196E-5 1.133188776218447E-4 20-21 1.8886479603640783E-5 2.6441071445097096E-4 0.0 5.665943881092235E-5 1.133188776218447E-4 22-23 1.8886479603640783E-5 2.6441071445097096E-4 0.0 5.665943881092235E-5 1.4164859702730587E-4 24-25 1.8886479603640783E-5 3.1162691346007295E-4 0.0 8.498915821638353E-5 1.6997831643276705E-4 26-27 1.8886479603640783E-5 3.399566328655341E-4 0.0 1.6997831643276705E-4 1.6997831643276705E-4 28-29 1.8886479603640783E-5 3.399566328655341E-4 0.0 3.9661607167645646E-4 1.6997831643276705E-4 30-31 1.8886479603640783E-5 3.588431124691749E-4 0.0 0.0011520752558220877 1.7942155623458744E-4 32-33 1.8886479603640783E-5 3.588431124691749E-4 0.0 0.0025685612260951465 2.0775127564004862E-4 34-35 1.8886479603640783E-5 4.2494579108191767E-4 0.0 0.004929371176550245 2.0775127564004862E-4 36-37 1.8886479603640783E-5 5.099349492983012E-4 0.0 0.008376153704214687 2.0775127564004862E-4 38-39 1.8886479603640783E-5 5.665943881092235E-4 0.0 0.014032654345505102 2.0775127564004862E-4 40-41 1.8886479603640783E-5 6.043673473165051E-4 0.0 0.019868576543030106 2.0775127564004862E-4 42-43 1.8886479603640783E-5 6.326970667219663E-4 0.0 0.02574227169976239 2.0775127564004862E-4 44-45 1.8886479603640783E-5 6.799132657310682E-4 0.0 0.03250363139786579 2.0775127564004862E-4 46-47 1.8886479603640783E-5 7.176862249383498E-4 0.0 0.039756039565663856 2.1719451544186902E-4 48-49 1.8886479603640783E-5 7.176862249383498E-4 0.0 0.047924441994238495 2.455242348473302E-4 50-51 1.8886479603640783E-5 8.121186229565538E-4 0.0 0.05537515819787478 2.455242348473302E-4 52-53 1.8886479603640783E-5 8.121186229565538E-4 0.0 0.06355300386625123 2.64410714450971E-4 54-55 1.8886479603640783E-5 8.215618627583741E-4 0.0 0.07084318499325659 2.927404338564321E-4 56-57 1.8886479603640783E-5 8.498915821638353E-4 0.0 0.07541371305733766 3.0218367365825253E-4 58-59 1.8886479603640783E-5 8.498915821638353E-4 0.0 0.08014477619804966 3.1162691346007295E-4 60-61 1.8886479603640783E-5 8.498915821638353E-4 0.0 0.08550853640548364 3.210701532618933E-4 62-63 1.8886479603640783E-5 8.498915821638353E-4 0.0 0.09074953449549397 3.210701532618933E-4 64-65 1.8886479603640783E-5 0.001038756378200243 0.0 0.09566946243224239 3.399566328655341E-4 66-67 1.8886479603640783E-5 0.0010765293374075248 0.0 0.1009104605222527 3.399566328655341E-4 68-69 1.8886479603640783E-5 0.0010765293374075248 0.0 0.10603813973464118 3.399566328655341E-4 70-71 1.8886479603640783E-5 0.0010765293374075248 0.0 0.11031592736486583 3.493998726673545E-4 72-73 1.8886479603640783E-5 0.0010765293374075248 0.0 0.11412155300499943 3.588431124691749E-4 74-75 1.8886479603640783E-5 0.0011237455364166266 0.0 0.11730392481821292 3.588431124691749E-4 76-77 1.8886479603640783E-5 0.001152075255822088 0.0 0.12034464803439908 3.6828635227099526E-4 78-79 1.8886479603640783E-5 0.0011615184956239083 0.0 0.12216719331615042 3.9661607167645646E-4 80-81 1.8886479603640783E-5 0.0011709617354257287 0.0 0.12274323094406145 4.2494579108191767E-4 82-83 1.8886479603640783E-5 0.0011709617354257287 0.0 0.12316817673514338 5.004917094964807E-4 84-85 1.8886479603640783E-5 0.0011898482150293694 0.0 0.12337592801078343 5.288214289019419E-4 86-87 1.8886479603640783E-5 0.0012087346946330101 0.0 0.12347036040880163 5.288214289019419E-4 88 1.8886479603640783E-5 0.0012653941334439325 0.0 0.12347980364860345 5.288214289019419E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7410 0.0 51.775524 1 GTATCAA 14350 0.0 39.802406 1 TCAACGC 16980 0.0 33.125153 4 ATCAACG 17295 0.0 32.696682 3 CAACGCA 17445 0.0 32.2422 5 TATCAAC 17600 0.0 32.20705 2 AACGCAG 17985 0.0 31.298145 6 ACGCAGA 20455 0.0 27.539927 7 CGCAGAG 21185 0.0 26.590946 8 TGGTATC 3510 0.0 25.971983 2 GTGGTAT 3750 0.0 25.57711 1 GCAGAGT 24240 0.0 23.204008 9 GAGTACT 14545 0.0 20.820395 12-13 GTACATG 16765 0.0 20.693872 1 TACATGG 16825 0.0 20.234894 2 ACATGGG 16860 0.0 19.678333 3 CAGAGTA 24010 0.0 19.575884 10-11 AGAGTAC 22240 0.0 19.201118 10-11 GTACTTT 16130 0.0 18.855202 14-15 CATGGGG 12365 0.0 18.09757 4 >>END_MODULE