##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139459_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5182161 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.303104052537154 32.0 25.0 33.0 18.0 34.0 2 31.621897891632468 33.0 32.0 33.0 28.0 33.0 3 32.537998722926595 33.0 33.0 33.0 31.0 34.0 4 32.71346721956342 33.0 33.0 34.0 31.0 34.0 5 33.19651666553779 33.0 33.0 34.0 33.0 34.0 6 37.09365127791283 38.0 38.0 38.0 36.0 38.0 7 37.24014460376665 38.0 38.0 38.0 36.0 38.0 8 37.17648448205295 38.0 38.0 38.0 36.0 38.0 9 37.380260088407134 38.0 38.0 38.0 37.0 38.0 10-11 37.427230744085335 38.0 38.0 38.0 37.0 38.0 12-13 37.54285683134893 38.0 38.0 38.0 37.5 38.0 14-15 37.53101843034209 38.0 38.0 38.0 37.5 38.0 16-17 37.548122202301315 38.0 38.0 38.0 38.0 38.0 18-19 37.550172891193455 38.0 38.0 38.0 38.0 38.0 20-21 37.55647971444132 38.0 38.0 38.0 38.0 38.0 22-23 37.565210908132784 38.0 38.0 38.0 38.0 38.0 24-25 37.57364524905935 38.0 38.0 38.0 38.0 38.0 26-27 37.54678671166963 38.0 38.0 38.0 38.0 38.0 28-29 37.52588307821177 38.0 38.0 38.0 38.0 38.0 30-31 37.51855231393702 38.0 38.0 38.0 38.0 38.0 32-33 37.434786060549754 38.0 38.0 38.0 37.0 38.0 34-35 37.482519520927255 38.0 38.0 38.0 37.5 38.0 36-37 37.469767252499686 38.0 38.0 38.0 37.5 38.0 38-39 37.46084502723788 38.0 38.0 38.0 37.5 38.0 40-41 37.4493279279812 38.0 38.0 38.0 38.0 38.0 42-43 37.41497226438608 38.0 38.0 38.0 37.0 38.0 44-45 37.38074249210037 38.0 38.0 38.0 37.0 38.0 46-47 37.352965312085345 38.0 38.0 38.0 37.0 38.0 48-49 37.24373461579519 38.0 38.0 38.0 37.0 38.0 50-51 37.238746069915436 38.0 38.0 38.0 37.0 38.0 52-53 37.24575787078194 38.0 38.0 38.0 37.0 38.0 54-55 37.228855452008716 38.0 38.0 38.0 37.0 38.0 56-57 37.17807874303821 38.0 38.0 38.0 37.0 38.0 58-59 37.16071308151451 38.0 38.0 38.0 37.0 38.0 60-61 37.17498932291045 38.0 38.0 38.0 37.0 38.0 62-63 37.1779053680431 38.0 38.0 38.0 37.0 38.0 64-65 37.18387778178346 38.0 38.0 38.0 37.0 38.0 66-67 37.12117884763854 38.0 38.0 38.0 36.0 38.0 68-69 37.13722284679508 38.0 38.0 38.0 36.0 38.0 70-71 37.15288601136612 38.0 38.0 38.0 36.0 38.0 72-73 37.164644538144 38.0 38.0 38.0 36.0 38.0 74-75 37.14788591637817 38.0 38.0 38.0 36.0 38.0 76-77 37.11565733331696 38.0 38.0 38.0 36.0 38.0 78-79 37.11340722447815 38.0 38.0 38.0 36.0 38.0 80-81 37.11113537481597 38.0 38.0 38.0 36.0 38.0 82-83 37.05246767500446 38.0 38.0 38.0 36.0 38.0 84-85 37.04813319512959 38.0 38.0 38.0 36.0 38.0 86-87 37.04049435135163 38.0 38.0 38.0 36.0 38.0 88-89 37.019054054306736 38.0 38.0 38.0 36.0 38.0 90-91 36.992514731610584 38.0 38.0 38.0 36.0 38.0 92-93 36.977899212738016 38.0 38.0 38.0 36.0 38.0 94-95 36.97070731331278 38.0 38.0 38.0 35.5 38.0 96-97 36.94648870569099 38.0 38.0 38.0 35.0 38.0 98-99 36.965728388928 38.0 38.0 38.0 35.0 38.0 100 35.536893388872755 38.0 36.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 14.0 21 50.0 22 242.0 23 672.0 24 1681.0 25 3460.0 26 6430.0 27 10861.0 28 17300.0 29 26054.0 30 34803.0 31 45176.0 32 57593.0 33 76885.0 34 111839.0 35 203112.0 36 621681.0 37 3964307.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.30549012274995 19.38341938816644 14.551979376943326 24.759111112140282 2 14.396764680906909 20.122916650583996 43.04516400466269 22.43515466384641 3 18.44996561276812 25.89688538901569 29.996839153433434 25.656309844782747 4 12.718902403842721 17.942534012355075 38.56009105081837 30.778472532983827 5 13.84067380384361 37.205212265693795 35.24182286115773 13.712291069304872 6 30.279337133678403 37.42980968750296 18.71327424987375 13.577578928944895 7 27.107629423323594 32.43585060363813 22.687195554132725 17.769324418905548 8 24.44773522088565 36.77139710634231 20.799701128544637 17.9811665442274 9 25.45598255245254 17.65089892035388 21.440572764914094 35.45254576227948 10-11 24.536887217514085 26.95405449579818 28.332591364876546 20.17646692181119 12-13 25.313059551797018 24.212900757039392 28.777444390477253 21.696595300686337 14-15 22.456288023471288 25.589826329208993 26.630637295908024 25.3232483514117 16-17 21.921655849750714 28.780232802493018 27.26781356272026 22.03029778503601 18-19 21.903950880723315 27.85631322531276 29.09376030578749 21.145975588176437 20-21 22.761986113189575 26.936124396397105 29.044917308321132 21.256972182092184 22-23 22.518688397856266 26.798689243107464 28.895751676776715 21.786870682259558 24-25 22.21172660218953 26.956891950663575 29.010533864875534 21.820847582271362 26-27 22.14650679474949 27.039363368910287 28.993234443587152 21.82089539275307 28-29 22.094164016462557 27.103669999753844 29.029733287062353 21.772432696721246 30-31 22.359919013985515 26.984289227153944 28.89380975976732 21.761981999093223 32-33 22.13596135027887 27.154314240097094 28.798934024994143 21.910790384629898 34-35 22.273785141483987 27.110854449059683 28.86988568575123 21.7454747237051 36-37 22.26246710176385 27.018259262507748 28.83698013591228 21.88229349981612 38-39 22.110648942691224 27.215772120985694 28.904560538667745 21.769018397655334 40-41 22.384196079582935 27.031084438943797 28.744519988886523 21.84019949258674 42-43 22.247741254588437 27.163461301093445 28.5717840538864 22.017013390431718 44-45 22.332063993947404 27.23259265178624 28.48245114196315 21.952892212303198 46-47 22.3845352371638 27.22260741249431 28.228915607137438 22.16394174320445 48-49 22.33017568773731 27.31110403594632 28.171231191059125 22.18748908525724 50-51 22.309189872395898 27.45835209525366 28.078596018348573 22.153862014001874 52-53 22.49841560453489 27.422139449727585 27.91427437962934 22.165170566108184 54-55 22.474484480253 27.31415288721768 27.98676216561473 22.224600466914584 56-57 22.45472160285557 27.44346289862762 27.944853850821698 22.15696164769511 58-59 22.416014841818836 27.440393492465493 28.012383537893438 22.131208127822234 60-61 22.49714312480536 27.387094351151735 27.99849518213529 22.117267341907613 62-63 22.467422022857082 27.483616425405 27.976962245510457 22.071999306227458 64-65 22.47067738386342 27.399894667110157 27.939409814549432 22.19001813447699 66-67 22.527079929532135 27.436891257785724 27.716913756353645 22.3191150563285 68-69 22.44083634284922 27.440650007486106 27.99867538440114 22.119838265263535 70-71 22.530490091476324 27.228529809149215 28.006279800846386 22.23470029852808 72-73 22.496105817439833 27.105253081634384 28.021022759117827 22.377618341807956 74-75 22.355032951382437 27.323649082892377 28.11041792161087 22.21090004411432 76-77 22.48433294386979 27.341267240541573 27.860556985597384 22.313842829991255 78-79 22.470471736830415 27.288597990386066 27.798252258610777 22.442678014172746 80-81 22.42380024576421 27.354008211885027 27.855620268828662 22.366571273522105 82-83 22.551019303418276 27.320174439376427 27.85719216678213 22.27161409042317 84-85 22.580974177732095 27.330878792340453 27.770574015009963 22.31757301491749 86-87 22.385672786009028 27.38540943031656 27.85366059667384 22.375257187000575 88-89 22.527672826942492 27.37464779820551 27.741769335267346 22.355910039584654 90-91 22.544966619206512 27.391523020355535 27.779308099260767 22.28420226117718 92-93 22.57162674300191 27.346363324207783 27.785876314767272 22.296133618023035 94-95 22.444814698201988 27.422303767744005 27.771367740684582 22.36151379336943 96-97 22.597039962481055 27.533261402737182 27.765579033962617 22.10411960081915 98-99 23.63236790333805 29.459532510848636 27.978861653167336 18.929237932645982 100 22.578577225087322 30.28140075963054 21.90075790880072 25.239264106481425 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 866.0 1 786.0 2 918.0 3 1208.5 4 1675.0 5 2490.5 6 3126.5 7 3884.5 8 4874.0 9 5488.5 10 5609.0 11 5755.0 12 6485.0 13 8240.0 14 11651.0 15 15500.0 16 18359.5 17 20082.0 18 20176.5 19 18729.5 20 16671.5 21 15172.5 22 15108.5 23 16790.0 24 20642.5 25 27096.5 26 35635.0 27 45481.5 28 55635.5 29 66975.0 30 78529.5 31 90239.5 32 102850.0 33 115359.5 34 128718.0 35 141245.5 36 154314.5 37 166227.5 38 175087.0 39 182945.0 40 191438.0 41 198949.0 42 203115.5 43 207745.0 44 212089.0 45 215897.0 46 218089.5 47 217440.5 48 217238.5 49 216747.5 50 214691.5 51 208824.5 52 199742.5 53 188284.0 54 175320.5 55 163441.5 56 150669.5 57 135461.5 58 119693.0 59 104026.0 60 87420.5 61 70944.0 62 56145.0 63 43287.5 64 32341.5 65 23608.0 66 17245.5 67 13107.0 68 9959.5 69 7383.5 70 5326.5 71 3765.0 72 2618.0 73 1671.5 74 1027.5 75 655.0 76 418.5 77 239.5 78 139.5 79 87.5 80 54.0 81 38.5 82 30.5 83 23.0 84 15.0 85 7.5 86 6.5 87 6.5 88 5.0 89 3.5 90 2.0 91 1.5 92 1.0 93 1.5 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.011597478349283243 3 9.648484483596707E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 3.9563473997244455E-4 26-27 3.860226971695368E-4 28-29 0.0030792742256831934 30-31 0.013755334901351354 32-33 0.007855646497455526 34-35 6.689024164439093E-4 36-37 1.1668613704514528E-4 38-39 6.936711883281127E-4 40-41 9.821027487680995E-6 42-43 0.0015502744627632467 44-45 6.758632438434077E-4 46-47 0.0015725665859248879 48-49 0.0035531587884455314 50-51 0.002155308040793475 52-53 0.0 54-55 0.001741573027918446 56-57 0.04974040202827884 58-59 0.06951220303254833 60-61 0.04805215826105387 62-63 0.014653372299898318 64-65 0.0 66-67 0.0 68-69 2.615226327134738E-4 70-71 0.0017045260224489377 72-73 0.005759784364327336 74-75 0.010322133408088567 76-77 0.019657640721593577 78-79 0.014396809612231859 80-81 0.006833359145684913 82-83 0.038750835964918504 84-85 0.02760625677601446 86-87 0.0083270406053545 88-89 0.002552469118419108 90-91 0.0038761258025700168 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 29.0 20-21 147.0 22-23 371.0 24-25 403.0 26-27 958.0 28-29 2362.0 30-31 7407.0 32-33 9769.0 34-35 13577.0 36-37 22682.0 38-39 26824.0 40-41 26739.0 42-43 31142.0 44-45 37958.0 46-47 39098.0 48-49 36158.0 50-51 33352.0 52-53 32571.0 54-55 35502.0 56-57 36791.0 58-59 37194.0 60-61 36853.0 62-63 35869.0 64-65 38621.0 66-67 40823.0 68-69 41781.0 70-71 41875.0 72-73 39405.0 74-75 39829.0 76-77 42110.0 78-79 44045.0 80-81 42975.0 82-83 40576.0 84-85 40684.0 86-87 42379.0 88-89 43933.0 90-91 45550.0 92-93 43620.0 94-95 51330.0 96-97 161751.0 98-99 352266.0 100-101 3484852.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.65085212672462 #Duplication Level Percentage of deduplicated Percentage of total 1 91.46125567268858 80.1665699629138 2 6.2367923701083 10.933203315548939 3 1.3053987734106514 3.4325794456387406 4 0.4522761400945712 1.5856955630350018 5 0.21590039119916807 0.9461926631550139 6 0.1077757365170117 0.5667981086580856 7 0.0597162463921903 0.3663925917459447 8 0.03768047710020772 0.2642180741099792 9 0.02340031481116995 0.1845951779909395 >10 0.09721106383621453 1.3237683885514697 >50 0.0020259693535051586 0.11688312630040376 >100 5.338356430331598E-4 0.08767188472638139 >500 3.3008845402207806E-5 0.025431697625288678 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.9296968967193415E-5 0.0 0.0 0.0 3 0.0 1.9296968967193415E-5 0.0 3.859393793438683E-5 0.0 4 0.0 3.859393793438683E-5 0.0 3.859393793438683E-5 0.0 5 0.0 3.859393793438683E-5 0.0 3.859393793438683E-5 0.0 6 0.0 3.859393793438683E-5 0.0 3.859393793438683E-5 0.0 7 0.0 3.859393793438683E-5 0.0 3.859393793438683E-5 0.0 8 0.0 3.859393793438683E-5 0.0 3.859393793438683E-5 0.0 9 0.0 1.5437575173754732E-4 0.0 3.859393793438683E-5 0.0 10-11 9.648484483596707E-6 1.5437575173754732E-4 0.0 5.7890906901580244E-5 0.0 12-13 1.9296968967193415E-5 1.7367272070474075E-4 0.0 7.718787586877366E-5 0.0 14-15 1.9296968967193415E-5 3.0875150347509464E-4 0.0 9.648484483596709E-5 0.0 16-17 1.9296968967193415E-5 3.280484724422881E-4 0.0 1.3507878277035392E-4 0.0 18-19 1.9296968967193415E-5 3.376969569258848E-4 0.0 2.1226665863912758E-4 0.0 20-21 1.9296968967193415E-5 3.762908948602716E-4 0.0 2.31563627606321E-4 0.0 22-23 1.9296968967193415E-5 4.1488483279465845E-4 0.0 2.7015756554070783E-4 1.9296968967193415E-5 24-25 2.8945453450790122E-5 4.6312725521264195E-4 0.0 2.8945453450790123E-4 3.859393793438683E-5 26-27 3.859393793438683E-5 4.824242241798354E-4 0.0 3.1839998795869134E-4 3.859393793438683E-5 28-29 5.789090690158025E-5 4.824242241798354E-4 0.0 5.692605845322058E-4 3.859393793438683E-5 30-31 5.789090690158025E-5 5.403151310814157E-4 0.0 0.001418327219088716 3.859393793438683E-5 32-33 5.789090690158025E-5 5.403151310814157E-4 0.0 0.0028945453450790123 5.789090690158025E-5 34-35 6.753939138517696E-5 6.078545224665927E-4 0.0 0.004679514974544403 5.789090690158025E-5 36-37 8.683636035237036E-5 6.753939138517696E-4 0.0 0.007670545164459383 5.789090690158025E-5 38-39 9.648484483596707E-5 6.753939138517696E-4 0.0 0.012610569220060899 5.789090690158025E-5 40-41 9.648484483596707E-5 8.104726966221235E-4 0.0 0.0178786417481047 5.789090690158025E-5 42-43 1.157818138031605E-4 8.394181500729136E-4 0.0 0.023513356686525176 5.789090690158025E-5 44-45 1.2543029828675722E-4 8.876605724908971E-4 0.0 0.029572604942223912 5.789090690158025E-5 46-47 1.3507878277035392E-4 9.26254510425284E-4 0.0 0.036287950142807224 5.789090690158025E-5 48-49 1.3507878277035392E-4 9.26254510425284E-4 0.0 0.04294540443648895 5.789090690158025E-5 50-51 1.3507878277035392E-4 9.841454173268641E-4 0.0 0.048995004207704085 5.789090690158025E-5 52-53 1.5437575173754732E-4 9.841454173268641E-4 0.0 0.05532441002894352 6.753939138517696E-5 54-55 1.5437575173754732E-4 9.841454173268641E-4 0.0 0.062010809776076044 7.718787586877366E-5 56-57 1.5437575173754732E-4 0.0010227393552612511 0.0 0.06829197317489749 7.718787586877366E-5 58-59 1.5437575173754732E-4 0.0010420363242284445 0.0 0.07464067596510413 7.718787586877366E-5 60-61 1.5437575173754732E-4 0.0011095757156136215 0.0 0.0809025423949584 7.718787586877366E-5 62-63 1.5437575173754732E-4 0.0011192242000972181 0.0 0.08654690581786248 7.718787586877366E-5 64-65 1.5437575173754732E-4 0.0012735999518347656 0.0 0.09203689348902899 7.718787586877366E-5 66-67 1.5437575173754732E-4 0.001292896920801959 0.0 0.09815403265162931 7.718787586877366E-5 68-69 1.5437575173754732E-4 0.0013121938897691524 0.0 0.10347034760209109 8.683636035237036E-5 70-71 1.5437575173754732E-4 0.0013314908587363458 0.0 0.10820775348353708 1.0613332931956379E-4 72-73 1.5437575173754732E-4 0.0013507878277035392 0.0 0.1122408199976805 1.5437575173754732E-4 74-75 1.5437575173754732E-4 0.0013797332811543292 0.0 0.11507747443585795 1.5437575173754732E-4 76-77 1.5437575173754732E-4 0.0014569211570231028 0.0 0.11793342584300257 1.5437575173754732E-4 78-79 1.5437575173754732E-4 0.001485866610473893 0.0 0.11981488031730392 1.5437575173754732E-4 80-81 1.7367272070474075E-4 0.001485866610473893 0.0 0.12060605604495885 1.5437575173754732E-4 82-83 1.7367272070474075E-4 0.001485866610473893 0.0 0.12126215298984341 1.5437575173754732E-4 84-85 1.7367272070474075E-4 0.001485866610473893 0.0 0.12145512267951536 1.5437575173754732E-4 86-87 1.7367272070474075E-4 0.0015437575173754732 0.0 0.12159020146228572 1.5437575173754732E-4 88 1.7367272070474075E-4 0.0016402423622114404 0.0 0.12159020146228572 1.5437575173754732E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6825 0.0 50.709404 1 GTATCAA 12900 0.0 39.45807 1 TCAACGC 15315 0.0 32.443928 4 ATCAACG 15445 0.0 32.33826 3 TATCAAC 15735 0.0 31.96537 2 CAACGCA 15800 0.0 31.448025 5 AACGCAG 16270 0.0 30.592543 6 ACGCAGA 18630 0.0 26.71716 7 CGCAGAG 19160 0.0 25.978113 8 GTGGTAT 3485 0.0 24.239794 1 TGGTATC 3385 0.0 22.918673 2 GCAGAGT 22005 0.0 22.678185 9 GTACATG 16185 0.0 21.223705 1 GAGTACT 12775 0.0 20.779781 12-13 TACATGG 16215 0.0 20.466774 2 ACATGGG 16600 0.0 19.418455 3 CAGAGTA 21800 0.0 19.283768 10-11 GTACTTT 13865 0.0 19.0841 14-15 AGAGTAC 20205 0.0 18.38525 10-11 CATGGGG 11590 0.0 17.103916 4 >>END_MODULE