##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139457_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5059846 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.806402803563586 18.0 18.0 32.0 18.0 33.0 2 30.10510734911695 32.0 27.0 33.0 25.0 33.0 3 31.267087970661557 33.0 31.0 33.0 29.0 33.0 4 32.10720978464562 33.0 32.0 33.0 31.0 33.0 5 32.58134457056598 33.0 33.0 33.0 32.0 34.0 6 37.06113763146151 38.0 37.0 38.0 36.0 38.0 7 37.00857377872765 38.0 38.0 38.0 35.0 38.0 8 37.35314948320561 38.0 38.0 38.0 37.0 38.0 9 37.481787983270635 38.0 38.0 38.0 37.0 38.0 10-11 37.42634350926886 38.0 38.0 38.0 37.0 38.0 12-13 37.545893491620106 38.0 38.0 38.0 37.5 38.0 14-15 37.5529556630775 38.0 38.0 38.0 38.0 38.0 16-17 37.584960293257936 38.0 38.0 38.0 38.0 38.0 18-19 37.578720775296325 38.0 38.0 38.0 38.0 38.0 20-21 37.58390147836012 38.0 38.0 38.0 38.0 38.0 22-23 37.59138030128466 38.0 38.0 38.0 38.0 38.0 24-25 37.59902986806517 38.0 38.0 38.0 38.0 38.0 26-27 37.56638281671128 38.0 38.0 38.0 38.0 38.0 28-29 37.5410583788949 38.0 38.0 38.0 38.0 38.0 30-31 37.53903121971401 38.0 38.0 38.0 38.0 38.0 32-33 37.45233508774028 38.0 38.0 38.0 37.5 38.0 34-35 37.49376046765057 38.0 38.0 38.0 37.0 38.0 36-37 37.48037326629988 38.0 38.0 38.0 37.5 38.0 38-39 37.45946592333918 38.0 38.0 38.0 37.5 38.0 40-41 37.46856440041155 38.0 38.0 38.0 38.0 38.0 42-43 37.43511257709545 38.0 38.0 38.0 37.0 38.0 44-45 37.39674236225458 38.0 38.0 38.0 37.0 38.0 46-47 37.36764676494238 38.0 38.0 38.0 37.0 38.0 48-49 37.251962061008555 38.0 38.0 38.0 37.0 38.0 50-51 37.243933810539595 38.0 38.0 38.0 37.0 38.0 52-53 37.25215766545005 38.0 38.0 38.0 37.0 38.0 54-55 37.23773380278777 38.0 38.0 38.0 37.0 38.0 56-57 37.18834145989989 38.0 38.0 38.0 37.0 38.0 58-59 37.174513745213105 38.0 38.0 38.0 37.0 38.0 60-61 37.18588743683456 38.0 38.0 38.0 37.0 38.0 62-63 37.19246301997956 38.0 38.0 38.0 37.0 38.0 64-65 37.20082669879062 38.0 38.0 38.0 37.0 38.0 66-67 37.13550556960078 38.0 38.0 38.0 36.5 38.0 68-69 37.15635887093541 38.0 38.0 38.0 36.0 38.0 70-71 37.174265208659136 38.0 38.0 38.0 36.0 38.0 72-73 37.19069473930791 38.0 38.0 38.0 36.0 38.0 74-75 37.180301021791166 38.0 38.0 38.0 36.0 38.0 76-77 37.150845462185025 38.0 38.0 38.0 36.0 38.0 78-79 37.14954125635525 38.0 38.0 38.0 36.0 38.0 80-81 37.148627165229605 38.0 38.0 38.0 36.0 38.0 82-83 37.093642751081866 38.0 38.0 38.0 36.0 38.0 84-85 37.09398178077283 38.0 38.0 38.0 36.0 38.0 86-87 37.0890461822479 38.0 38.0 38.0 36.0 38.0 88-89 37.072048447942294 38.0 38.0 38.0 36.0 38.0 90-91 37.050490147485675 38.0 38.0 38.0 36.0 38.0 92-93 37.03641128053685 38.0 38.0 38.0 36.0 38.0 94-95 37.029157195162696 38.0 38.0 38.0 36.0 38.0 96-97 37.003155942380644 38.0 38.0 38.0 36.0 38.0 98-99 37.02545170992974 38.0 38.0 38.0 36.0 38.0 100 35.67038943205037 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 7.0 20 7.0 21 61.0 22 205.0 23 606.0 24 1493.0 25 3060.0 26 5786.0 27 10190.0 28 16863.0 29 24873.0 30 33529.0 31 42743.0 32 54773.0 33 72638.0 34 110544.0 35 219144.0 36 814539.0 37 3648785.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.76496517878212 22.05114543011783 14.418976387818919 23.764913003281126 2 14.499240620817188 20.270502644979757 41.61854498046802 23.611711753735033 3 18.357925010306648 25.427098316508694 30.63941522284688 25.575561450337776 4 13.12496467283787 17.813941372919253 37.94969254004964 31.11140141419324 5 13.789411772611263 36.85214925513544 35.123677677146695 14.23476129510661 6 30.433870912276777 37.36890411289197 18.279232213786745 13.917992761044506 7 26.916649241893925 32.427311028833685 22.488767444700887 18.167272284571506 8 24.35750020850437 36.92582738684142 20.669561879946542 18.04711052470767 9 25.399290808455433 17.37473828254852 21.297150150419597 35.92882075857645 10-11 24.614484314344747 26.7508932090028 28.078028461735794 20.55659401491666 12-13 25.39925128156074 24.109498589482765 28.613934099970635 21.877316028985863 14-15 22.515695141709845 25.48428351376702 26.19927563012787 25.800745714395262 16-17 22.079002009152056 28.776063540273753 26.87700376651779 22.26793068405639 18-19 22.10482295310964 27.650139944970658 28.80924636836773 21.435790733551972 20-21 22.84910523742346 26.680706149558343 28.782102693043054 21.688085919975144 22-23 22.646933696211274 26.696926259782856 28.67876160984593 21.977378434159938 24-25 22.418894332627247 26.877807241587504 28.74778457264996 21.95551385313529 26-27 22.317693457995286 26.991775383122402 28.77903250022956 21.91149865865275 28-29 22.21696309646075 26.84820505224777 28.809200883915448 22.12563096737603 30-31 22.590084360830364 26.829287847309175 28.7413577906826 21.839270001177866 32-33 22.368670330178265 27.013322864268023 28.68911061811988 21.92889618743383 34-35 22.433775822475997 26.980548699268113 28.78454136609074 21.801134112165148 36-37 22.437118301998147 26.84759885633049 28.67747207369152 22.037810767979852 38-39 22.14376382547415 26.845847156713663 28.915901920918035 22.09448709689415 40-41 22.392514580018847 26.702901370368455 28.822083037367896 22.082501012244798 42-43 22.339718761774012 26.852522111578697 28.624668824414183 22.183090302233104 44-45 22.283772460664743 26.977819923369285 28.549997091871976 22.188410524093996 46-47 22.536618799585444 26.914554422378167 28.14011452450005 22.40871225353634 48-49 22.453936794952682 27.053600487125745 28.040526632959068 22.451936084962508 50-51 22.302898665008648 27.172434321753062 28.104002352571584 22.420664660666706 52-53 22.500113207084794 27.148721079585382 28.0756127433353 22.27555296999453 54-55 22.443537961977995 27.095356557525808 27.97612719505388 22.484978285442324 56-57 22.503039815297097 27.29470305142856 27.831816531221914 22.370440602052426 58-59 22.310595861201314 27.410634157295167 28.053676189963934 22.225093791539592 60-61 22.387862597432655 27.537915868139308 27.86133530801413 22.212886226413907 62-63 22.267427891440185 27.771540380147737 27.83726315362874 22.12376857478334 64-65 22.253806716382183 27.688392647822063 27.79891402686454 22.258886608931217 66-67 22.269576913490315 27.774544632824817 27.6581627699542 22.297715683730672 68-69 22.19820817879125 27.533849983574072 27.89104069875125 22.376901138883426 70-71 22.383639562287392 27.31226941037027 27.832889423060724 22.471201604281614 72-73 22.518045196183685 27.29571842777328 27.809993138690785 22.37624323735225 74-75 22.37484880758962 27.413859093367186 27.71581019584935 22.49548190319384 76-77 22.579462371284592 27.170949766548276 27.701473298955197 22.54811456321194 78-79 22.539968155823104 27.239514742222738 27.615666344680996 22.60485075727317 80-81 22.551575425608625 27.279570246100278 27.588490221420052 22.580364106871045 82-83 22.651967573631982 27.213514130688388 27.6488276964471 22.48569059923253 84-85 22.6623270201056 27.252975387728632 27.600242412295767 22.48445517987 86-87 22.58178843883979 27.290187161320123 27.634314112461517 22.49371028737857 88-89 22.632826829113604 27.26976522795893 27.56290515906547 22.534502783861992 90-91 22.699640297562823 27.279681933126408 27.528048518992044 22.492629250318725 92-93 22.772840200216187 27.29303764618881 27.502967946181244 22.43115420741376 94-95 22.632965291415 27.31473191916926 27.562182979460488 22.49011980995525 96-97 22.750078990987607 27.396341024127935 27.60027403329467 22.253305951589788 98-99 23.825384847768312 29.261908870604124 27.796211818087794 19.116494463539766 100 30.439328728969073 40.366074224511095 29.19459704651983 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1220.0 1 1141.0 2 1193.0 3 1390.0 4 1775.5 5 2487.5 6 3143.0 7 4140.5 8 5289.5 9 6037.0 10 6262.0 11 6257.5 12 6902.5 13 8631.0 14 12328.0 15 16735.5 16 19829.0 17 21372.0 18 21044.5 19 19207.0 20 17137.0 21 15585.0 22 15234.0 23 16983.0 24 20933.0 25 27063.5 26 35249.5 27 45044.0 28 55674.0 29 67590.5 30 78641.5 31 89158.5 32 101754.5 33 114571.5 34 125836.0 35 136128.0 36 148689.5 37 159857.5 38 169116.5 39 177518.0 40 184842.0 41 191976.5 42 196899.0 43 201686.0 44 210613.0 45 220230.0 46 220557.5 47 218411.5 48 217513.5 49 214511.5 50 211120.0 51 206816.0 52 200555.5 53 192052.0 54 181569.0 55 169333.0 56 155905.0 57 141338.0 58 126143.5 59 109151.0 60 91368.5 61 74184.0 62 58841.5 63 45552.5 64 34286.0 65 25605.5 66 19025.5 67 14412.5 68 10968.5 69 8114.0 70 5903.5 71 4249.0 72 2923.5 73 1901.5 74 1237.0 75 801.0 76 497.5 77 316.0 78 216.0 79 152.5 80 107.0 81 73.0 82 48.0 83 29.0 84 15.5 85 7.0 86 5.5 87 4.5 88 3.5 89 3.5 90 3.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.008893551305711676 3 7.905378938410378E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 2.767269018772856E-4 26-27 3.261804271975171E-4 28-29 0.002274105443545975 30-31 0.011064762709334819 32-33 0.006288185352693804 34-35 5.172027605896271E-4 36-37 6.991372646154644E-5 38-39 5.025135728916037E-4 40-41 0.0 42-43 0.0012535011407879488 44-45 5.651806970034428E-4 46-47 0.001224268953213732 48-49 0.0026186617779393666 50-51 0.001712392478664858 52-53 0.0 54-55 0.001256402417318251 56-57 0.04613926130620346 58-59 0.06566040547540046 60-61 0.043614736421425764 62-63 0.012100967264712723 64-65 0.0 66-67 0.0 68-69 1.2630896274620489E-4 70-71 0.0012548542817893804 72-73 0.005198938804843952 74-75 0.00851916479391582 76-77 0.01789782323576799 78-79 0.01280254041234131 80-81 0.0056322508327203095 82-83 0.036895452381170965 84-85 0.024997376779793797 86-87 0.0076528747251015175 88-89 0.002370278501317747 90-91 0.003590931924616357 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 42.0 20-21 162.0 22-23 422.0 24-25 480.0 26-27 1172.0 28-29 3171.0 30-31 10165.0 32-33 13172.0 34-35 18226.0 36-37 29459.0 38-39 34304.0 40-41 33854.0 42-43 38379.0 44-45 45781.0 46-47 46333.0 48-49 44240.0 50-51 39002.0 52-53 35951.0 54-55 38495.0 56-57 39890.0 58-59 42165.0 60-61 43075.0 62-63 42380.0 64-65 44586.0 66-67 47897.0 68-69 49799.0 70-71 55262.0 72-73 43360.0 74-75 42376.0 76-77 44353.0 78-79 45783.0 80-81 45101.0 82-83 42194.0 84-85 41863.0 86-87 43303.0 88-89 45159.0 90-91 45493.0 92-93 44267.0 94-95 50573.0 96-97 153791.0 98-99 1153764.0 100-101 2420602.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.57557236374714 #Duplication Level Percentage of deduplicated Percentage of total 1 91.89446837028557 81.39605132960301 2 5.963669303896258 10.564708439614412 3 1.2685875117440324 3.370975948386884 4 0.41692716347179626 1.477182485540317 5 0.17936032820367812 0.7943471864995163 6 0.09585055807330871 0.5094010825636741 7 0.051597011081436814 0.31991643521578095 8 0.033874068770440566 0.24003320237045642 9 0.02147055748453623 0.17115902263453783 >10 0.0720864779300832 0.9838162531977769 >50 0.0015190903755463083 0.08883631937180067 >100 5.89558683331993E-4 0.08357229500178914 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 1.9763447346025945E-5 0.0 0.0 1.9763447346025945E-5 5 0.0 9.881723673012973E-5 0.0 0.0 1.9763447346025945E-5 6 5.9290342038077836E-5 9.881723673012973E-5 0.0 0.0 3.952689469205189E-5 7 7.905378938410378E-5 9.881723673012973E-5 0.0 0.0 3.952689469205189E-5 8 7.905378938410378E-5 9.881723673012973E-5 0.0 0.0 3.952689469205189E-5 9 7.905378938410378E-5 2.3716136815231135E-4 0.0 0.0 3.952689469205189E-5 10-11 7.905378938410378E-5 2.3716136815231135E-4 0.0 1.9763447346025945E-5 3.952689469205189E-5 12-13 7.905378938410378E-5 2.3716136815231135E-4 0.0 1.9763447346025945E-5 3.952689469205189E-5 14-15 9.881723673012973E-5 3.2609688120942813E-4 0.0 1.9763447346025945E-5 4.940861836506487E-5 16-17 1.383441314221816E-4 3.5574205222846703E-4 0.0 2.9645171019038918E-5 5.9290342038077836E-5 18-19 1.383441314221816E-4 3.75505499574493E-4 0.0 3.952689469205189E-5 5.9290342038077836E-5 20-21 1.383441314221816E-4 4.3479584161257084E-4 0.0 3.952689469205189E-5 5.9290342038077836E-5 22-23 1.482258550951946E-4 4.446775652855838E-4 0.0 3.952689469205189E-5 6.91720657110908E-5 24-25 1.5810757876820756E-4 4.6444101263160974E-4 0.0 3.952689469205189E-5 7.905378938410378E-5 26-27 1.5810757876820756E-4 4.743227363046227E-4 0.0 1.4822585509519461E-4 9.881723673012973E-5 28-29 1.7787102611423352E-4 4.743227363046227E-4 0.0 5.731399730347525E-4 9.881723673012973E-5 30-31 1.9763447346025947E-4 5.336130783427005E-4 0.0 0.001531667169317011 9.881723673012973E-5 32-33 1.9763447346025947E-4 5.336130783427005E-4 0.0 0.004239259455722565 9.881723673012973E-5 34-35 1.9763447346025947E-4 5.731399730347525E-4 0.0 0.007836206872699288 9.881723673012973E-5 36-37 2.3716136815231135E-4 6.126668677268044E-4 0.0 0.013666423839776943 9.881723673012973E-5 38-39 2.3716136815231135E-4 6.324303150728303E-4 0.0 0.02928942896681045 9.881723673012973E-5 40-41 2.668065391713503E-4 6.521937624188563E-4 0.0 0.04528793959341845 9.881723673012973E-5 42-43 2.766882628443632E-4 6.521937624188563E-4 0.0 0.05570327634477413 9.881723673012973E-5 44-45 3.063334338634021E-4 7.213658281299471E-4 0.0 0.06691903271364386 1.0869896040314271E-4 46-47 3.359786048824411E-4 8.004196175140509E-4 0.0 0.07839171389801192 1.1858068407615567E-4 48-49 3.359786048824411E-4 8.103013411870638E-4 0.0 0.09077351366029718 1.1858068407615567E-4 50-51 3.359786048824411E-4 9.091185779171935E-4 0.0 0.10326401238298558 1.1858068407615567E-4 52-53 3.359786048824411E-4 9.190003015902065E-4 0.0 0.14002402444659384 1.1858068407615567E-4 54-55 3.4586032855545403E-4 9.684089199552713E-4 0.0 0.18661635156485 1.1858068407615567E-4 56-57 3.5574205222846703E-4 0.0010079358146473233 0.0 0.2478533931665114 1.1858068407615567E-4 58-59 3.5574205222846703E-4 0.0010178175383203363 0.0 0.2861944810178017 1.1858068407615567E-4 60-61 3.5574205222846703E-4 0.0010276992619933493 0.0 0.3013728085795496 1.1858068407615567E-4 62-63 3.5574205222846703E-4 0.001047462709339375 0.0 0.31415975901242843 1.1858068407615567E-4 64-65 3.5574205222846703E-4 0.0011858068407615567 0.0 0.32176868624064847 1.1858068407615567E-4 66-67 3.5574205222846703E-4 0.0012055702881075827 0.0 0.3282016883517799 1.1858068407615567E-4 68-69 3.5574205222846703E-4 0.0012450971827996347 0.0 0.3346742173576034 1.1858068407615567E-4 70-71 3.5574205222846703E-4 0.0012450971827996347 0.0 0.3403166815748938 1.1858068407615567E-4 72-73 3.5574205222846703E-4 0.0012450971827996347 0.0 0.3440618548469657 1.383441314221816E-4 74-75 3.5574205222846703E-4 0.0012450971827996347 0.0 0.347332705382733 1.383441314221816E-4 76-77 3.5574205222846703E-4 0.0012945058011646993 0.0 0.350396039721367 1.383441314221816E-4 78-79 3.5574205222846703E-4 0.0013241509721837383 0.0 0.3521154596404713 1.383441314221816E-4 80-81 3.5574205222846703E-4 0.0013340326958567513 0.0 0.3527676534028901 1.383441314221816E-4 82-83 3.6562377590148003E-4 0.0013439144195297643 0.0 0.35332102992857883 1.383441314221816E-4 84-85 3.75505499574493E-4 0.0013537961432027773 0.0 0.35357795474407716 1.383441314221816E-4 86-87 3.75505499574493E-4 0.0013834413142218163 0.0 0.3536866537044803 1.482258550951946E-4 88 3.75505499574493E-4 0.0014032047615678421 0.0 0.3536866537044803 1.5810757876820756E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7460 0.0 49.62377 1 GTATCAA 13780 0.0 36.636246 1 TCAACGC 16780 0.0 30.234509 4 ATCAACG 16985 0.0 30.068392 3 TATCAAC 17240 0.0 29.699734 2 CAACGCA 17105 0.0 29.635368 5 AACGCAG 17675 0.0 28.727417 6 GTGGTAT 3680 0.0 27.070307 1 TGGTATC 3520 0.0 26.981672 2 ACGCAGA 20330 0.0 24.954994 7 CTTATAC 5185 0.0 24.748781 1 CGCAGAG 21005 0.0 24.173155 8 GCAGAGT 23590 0.0 21.50636 9 TATACAC 6880 0.0 20.919743 3 GAGTACT 13145 0.0 19.81139 12-13 TTATACA 7235 0.0 18.78652 2 CAGAGTA 23500 0.0 18.661135 10-11 GTACTTT 14360 0.0 17.973755 14-15 AGAGTAC 21705 0.0 17.831993 10-11 TATGCCG 3970 0.0 17.71346 42-43 >>END_MODULE