##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139454_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3798924 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.481868286914928 18.0 18.0 32.0 18.0 33.0 2 29.6881682813344 32.0 27.0 33.0 25.0 33.0 3 30.98735457724345 33.0 30.0 33.0 28.0 33.0 4 32.12844189565256 33.0 32.0 33.0 31.0 33.0 5 32.53364584287551 33.0 33.0 33.0 32.0 34.0 6 37.024307409150595 38.0 37.0 38.0 35.0 38.0 7 37.01543516006111 38.0 38.0 38.0 35.0 38.0 8 37.33821418907038 38.0 38.0 38.0 37.0 38.0 9 37.45893152903296 38.0 38.0 38.0 37.0 38.0 10-11 37.433163837970966 38.0 38.0 38.0 37.0 38.0 12-13 37.535174433602776 38.0 38.0 38.0 37.5 38.0 14-15 37.543989034789846 38.0 38.0 38.0 37.5 38.0 16-17 37.57282601599822 38.0 38.0 38.0 38.0 38.0 18-19 37.57697929729576 38.0 38.0 38.0 38.0 38.0 20-21 37.58023824570316 38.0 38.0 38.0 38.0 38.0 22-23 37.58736031919894 38.0 38.0 38.0 38.0 38.0 24-25 37.591918738426166 38.0 38.0 38.0 38.0 38.0 26-27 37.56276125633451 38.0 38.0 38.0 38.0 38.0 28-29 37.54317053976388 38.0 38.0 38.0 38.0 38.0 30-31 37.53701790868924 38.0 38.0 38.0 38.0 38.0 32-33 37.44779064920872 38.0 38.0 38.0 37.0 38.0 34-35 37.49587372797719 38.0 38.0 38.0 37.0 38.0 36-37 37.4826909944112 38.0 38.0 38.0 37.5 38.0 38-39 37.4577220088789 38.0 38.0 38.0 37.0 38.0 40-41 37.46171635846805 38.0 38.0 38.0 37.0 38.0 42-43 37.427984732417265 38.0 38.0 38.0 37.0 38.0 44-45 37.39124571425056 38.0 38.0 38.0 37.0 38.0 46-47 37.36015899835871 38.0 38.0 38.0 37.0 38.0 48-49 37.245947154891454 38.0 38.0 38.0 37.0 38.0 50-51 37.23129126917695 38.0 38.0 38.0 37.0 38.0 52-53 37.232537324938434 38.0 38.0 38.0 37.0 38.0 54-55 37.21156655326399 38.0 38.0 38.0 37.0 38.0 56-57 37.15722795893949 38.0 38.0 38.0 36.5 38.0 58-59 37.13745239655266 38.0 38.0 38.0 36.0 38.0 60-61 37.14486365962151 38.0 38.0 38.0 36.0 38.0 62-63 37.1432792278699 38.0 38.0 38.0 36.0 38.0 64-65 37.14613959390398 38.0 38.0 38.0 36.0 38.0 66-67 37.07789507881972 38.0 38.0 38.0 36.0 38.0 68-69 37.09364209940477 38.0 38.0 38.0 36.0 38.0 70-71 37.10681967575276 38.0 38.0 38.0 36.0 38.0 72-73 37.120725807764366 38.0 38.0 38.0 36.0 38.0 74-75 37.10882192404589 38.0 38.0 38.0 36.0 38.0 76-77 37.076180119063096 38.0 38.0 38.0 36.0 38.0 78-79 37.073920865563345 38.0 38.0 38.0 36.0 38.0 80-81 37.07224283446092 38.0 38.0 38.0 36.0 38.0 82-83 37.0167647062124 38.0 38.0 38.0 36.0 38.0 84-85 37.01289185158493 38.0 38.0 38.0 36.0 38.0 86-87 37.004075524224476 38.0 38.0 38.0 36.0 38.0 88-89 36.98288209955863 38.0 38.0 38.0 36.0 38.0 90-91 36.95551643651693 38.0 38.0 38.0 35.5 38.0 92-93 36.94051658230525 38.0 38.0 38.0 35.0 38.0 94-95 36.93223636590734 38.0 38.0 38.0 35.0 38.0 96-97 36.904955968430535 38.0 38.0 38.0 35.0 38.0 98-99 36.92528721358409 38.0 38.0 38.0 35.0 38.0 100 35.416106408764165 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 3.0 20 14.0 21 53.0 22 157.0 23 473.0 24 1177.0 25 2411.0 26 4400.0 27 7837.0 28 12846.0 29 19093.0 30 25686.0 31 32583.0 32 42153.0 33 57108.0 34 88815.0 35 175204.0 36 649517.0 37 2679394.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.705907251632304 23.260612741923765 14.529245649557613 23.504234356886318 2 14.31738385652184 20.487921994398462 41.90787182326957 23.28682232581012 3 18.174488355123714 25.740420182135782 31.010701977717904 25.074389485022603 4 12.972015233787252 18.283598197805485 38.471998913376524 30.27238765503074 5 13.617803356950548 37.26399896391715 35.331951889535034 13.786245789597265 6 29.953323625321275 38.207160764469094 18.370306960602527 13.4692086496071 7 26.676158828131335 32.91008190740325 22.487788647522297 17.92597061694311 8 24.14791662060099 37.51272728804261 20.728185138739285 17.61117095261711 9 25.364471624070394 17.611407861805077 21.30503268820329 35.719087825921235 10-11 24.32782282562115 27.206809085941174 28.380812566926846 20.08455552151083 12-13 25.182999186085326 24.496120480430776 28.751904486638846 21.568975846845053 14-15 22.333889806692632 25.941832476775 26.32998185802085 25.39429585851152 16-17 21.837920421677296 29.37635762126328 26.987957642743048 21.79776431431637 18-19 21.893001807880335 28.138072780608404 28.934074490566275 21.034850920944983 20-21 22.659599671482123 27.196331550351683 28.864981257633833 21.279087520532368 22-23 22.404116538018272 27.30336433846505 28.735002208635212 21.557516914881464 24-25 22.25417988704801 27.451645786098883 28.853791621165385 21.44038270568772 26-27 22.170942254810168 27.582427680281917 28.7965284850221 21.450101579885814 28-29 22.014644735253103 27.402690974382843 28.89280549494298 21.689858795421074 30-31 22.207284670868894 27.42258908426497 28.894103409659415 21.476022835206717 32-33 21.819882369939066 27.44530614217828 29.020213490081847 21.71459799780081 34-35 21.965422063953298 27.395945167759916 28.912820444932784 21.725812323354006 36-37 21.96828867652808 27.478292575134546 29.01276760398875 21.54065114434863 38-39 21.881831144627746 27.464977971301963 29.013968724072637 21.639222159997658 40-41 22.147232137143032 27.331439026239746 28.932573997099116 21.58875483951811 42-43 22.201817558948626 27.44151951045405 28.72302196235103 21.633640968246297 44-45 22.087898052185185 27.62822367898221 28.63560270101132 21.648275567821287 46-47 22.341381684209917 27.462273312299857 28.223179805990977 21.97316519749925 48-49 22.23254023597823 27.620027102927757 28.176742260253278 21.970690400840738 50-51 22.057604218673738 27.710443084860444 28.26805205580395 21.963900640661873 52-53 22.25780269365181 27.697939587016197 28.360622542626395 21.6836351767056 54-55 22.257841986978573 27.735639780482384 28.098107414514338 21.908410818024706 56-57 22.385374388584722 27.948277021372174 27.843497717430647 21.82285087261246 58-59 22.125822275862188 28.118558947302198 28.15718722637701 21.598431550458606 60-61 22.352640448980495 28.394254013368393 27.76712337536124 21.485982162289872 62-63 22.111412822293417 28.682169064671708 27.755662339966985 21.45075577306789 64-65 22.13655881073561 28.5789992053053 27.7251424216254 21.55929956233369 66-67 22.20843587231806 28.732588283079274 27.53153820423376 21.527437640368902 68-69 22.14943631077646 28.268412804169962 27.919793976700895 21.66235690835268 70-71 22.283763160710848 27.968356742449952 27.91086629073468 21.837013806104522 72-73 22.351402006041827 28.000723671840465 27.892620941956853 21.755253380160855 74-75 22.223494011225288 28.098743361573288 27.79877442510632 21.878988202095105 76-77 22.314575387808773 27.733727523716915 27.99341077753203 21.95828631094228 78-79 22.21925059714294 27.74584782530576 27.95333333121327 22.081568246338037 80-81 22.279145796206645 27.804834011372293 27.90409017645076 22.0119300159703 82-83 22.34672048082116 27.70516686981705 27.975990757834516 21.972121891527273 84-85 22.347615923572413 27.725421446026832 27.95770207866009 21.969260551740664 86-87 22.26121587379759 27.74705834849171 27.966225948490646 22.025499829220053 88-89 22.315054592142943 27.714402261590905 27.936248146408253 22.0342949998579 90-91 22.358644201295895 27.748017574980583 27.891771383273344 22.001566840450177 92-93 22.39637916389061 27.717365765518842 27.882075053369466 22.004180017221085 94-95 22.306937496749455 27.77555939179862 27.890773393859273 22.026729717592648 96-97 22.388326371163647 27.863398141389407 27.92068444496083 21.827591042486112 98-99 23.427471785454866 29.766584243039528 28.151832465691285 18.65411150581432 100 22.302208308817885 30.682893760712183 22.130413650200815 24.884484280269113 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 968.0 1 877.5 2 833.0 3 964.0 4 1224.0 5 1597.0 6 1942.5 7 2529.5 8 3328.0 9 3931.5 10 4173.0 11 4296.0 12 4775.0 13 5967.0 14 8559.0 15 11659.5 16 13967.0 17 15290.5 18 15151.5 19 13945.5 20 12624.0 21 11709.0 22 11938.5 23 13778.0 24 17137.5 25 22333.0 26 29207.0 27 36605.5 28 44346.0 29 53061.5 30 61697.0 31 70494.0 32 80331.5 33 90309.0 34 100049.5 35 109369.0 36 119264.0 37 127491.5 38 133635.0 39 139407.5 40 144623.0 41 149356.0 42 151879.0 43 154905.0 44 161821.0 45 170417.0 46 170544.5 47 165249.0 48 161405.0 49 156915.5 50 153353.5 51 148536.5 52 141892.0 53 133668.0 54 124587.5 55 115325.0 56 104849.0 57 93688.0 58 82425.0 59 71324.0 60 59806.5 61 48409.0 62 38431.0 63 29788.0 64 22442.5 65 16429.5 66 12010.0 67 9055.0 68 6880.0 69 5015.0 70 3596.5 71 2574.0 72 1790.0 73 1207.0 74 781.0 75 525.0 76 346.5 77 209.0 78 130.5 79 79.0 80 48.5 81 36.5 82 29.5 83 20.0 84 13.0 85 8.5 86 5.5 87 4.0 88 4.0 89 3.0 90 1.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.008555054010030209 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 2.237762826889432E-4 26-27 2.764608222761072E-4 28-29 0.002594322043072067 30-31 0.011915810580264386 32-33 0.007197171736006685 34-35 7.016147597505587E-4 36-37 7.972604006605569E-5 38-39 6.948435526335305E-4 40-41 0.0 42-43 0.001420624243940395 44-45 6.815594680401089E-4 46-47 0.0014298930976172893 48-49 0.0026761102391028237 50-51 0.0020406389044732203 52-53 0.0 54-55 0.0014894542384335367 56-57 0.045401863692880344 58-59 0.0633638808574457 60-61 0.04327780511725144 62-63 0.011804696069402813 64-65 0.0 66-67 0.0 68-69 1.509104806574264E-4 70-71 0.0013128289800585858 72-73 0.005546195171071541 74-75 0.008404536703422612 76-77 0.017708980530982923 78-79 0.012877739063301877 80-81 0.005702205757750061 82-83 0.0347580397439199 84-85 0.023070322373346306 86-87 0.0077440723097787776 88-89 0.002189990539575219 90-91 0.003718361183013512 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 26.0 20-21 106.0 22-23 296.0 24-25 345.0 26-27 927.0 28-29 2361.0 30-31 6725.0 32-33 8494.0 34-35 12213.0 36-37 19842.0 38-39 23217.0 40-41 22730.0 42-43 26112.0 44-45 30840.0 46-47 31156.0 48-49 29336.0 50-51 27225.0 52-53 25485.0 54-55 27599.0 56-57 29306.0 58-59 28919.0 60-61 28898.0 62-63 28728.0 64-65 31514.0 66-67 34118.0 68-69 36338.0 70-71 41694.0 72-73 30484.0 74-75 29851.0 76-77 31095.0 78-79 32097.0 80-81 31933.0 82-83 30012.0 84-85 29739.0 86-87 30411.0 88-89 32167.0 90-91 32682.0 92-93 31672.0 94-95 36936.0 96-97 113619.0 98-99 249852.0 100-101 2501824.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 90.13288351910691 #Duplication Level Percentage of deduplicated Percentage of total 1 92.80688991296937 83.64952598296247 2 5.396897175091684 9.728758088942719 3 1.0873037144470463 2.9400545713244375 4 0.35369764786946273 1.275191555856015 5 0.1470461309165655 0.6626845894919071 6 0.07537226452252486 0.40761117232680283 7 0.04440233684906808 0.2801477458635241 8 0.02240739190178036 0.16157142754001189 9 0.01589852780809155 0.12896821395467983 >10 0.04883296756858854 0.6638898019457183 >50 0.0010168304523325003 0.0672704176666211 >100 2.3509960346993148E-4 0.03432643212512298 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.6323243107785258E-5 0.0 2.6323243107785258E-5 2.6323243107785258E-5 3 0.0 2.6323243107785258E-5 0.0 2.6323243107785258E-5 2.6323243107785258E-5 4 0.0 2.6323243107785258E-5 0.0 5.2646486215570515E-5 2.6323243107785258E-5 5 0.0 5.2646486215570515E-5 0.0 5.2646486215570515E-5 2.6323243107785258E-5 6 0.0 5.2646486215570515E-5 0.0 5.2646486215570515E-5 2.6323243107785258E-5 7 0.0 7.896972932335577E-5 0.0 5.2646486215570515E-5 2.6323243107785258E-5 8 0.0 7.896972932335577E-5 0.0 5.2646486215570515E-5 2.6323243107785258E-5 9 0.0 1.316162155389263E-4 0.0 5.2646486215570515E-5 2.6323243107785258E-5 10-11 0.0 1.316162155389263E-4 0.0 5.2646486215570515E-5 2.6323243107785258E-5 12-13 0.0 1.316162155389263E-4 0.0 5.2646486215570515E-5 2.6323243107785258E-5 14-15 0.0 1.5793945864671155E-4 0.0 5.2646486215570515E-5 2.6323243107785258E-5 16-17 0.0 1.5793945864671155E-4 0.0 5.2646486215570515E-5 2.6323243107785258E-5 18-19 0.0 1.711010802006042E-4 0.0 5.2646486215570515E-5 6.580810776946314E-5 20-21 0.0 2.1058594486228206E-4 0.0 5.2646486215570515E-5 7.896972932335577E-5 22-23 0.0 2.1058594486228206E-4 0.0 7.896972932335577E-5 9.21313508772484E-5 24-25 0.0 2.3690918797006732E-4 0.0 1.0529297243114103E-4 1.0529297243114103E-4 26-27 0.0 2.3690918797006732E-4 0.0 1.316162155389263E-4 1.0529297243114103E-4 28-29 0.0 2.3690918797006732E-4 0.0 3.9484864661677884E-4 1.0529297243114103E-4 30-31 0.0 2.895556741856378E-4 0.0 0.0011450610751886586 1.0529297243114103E-4 32-33 0.0 2.895556741856378E-4 0.0 0.0027112940401018814 1.0529297243114103E-4 34-35 0.0 3.6852540350899355E-4 0.0 0.004843476731832487 1.0529297243114103E-4 36-37 0.0 4.738183759401346E-4 0.0 0.008186528606521215 1.0529297243114103E-4 38-39 0.0 5.001416190479199E-4 0.0 0.013135298310784842 1.316162155389263E-4 40-41 0.0 5.527881052634904E-4 0.0 0.01871582584963532 1.316162155389263E-4 42-43 0.0 5.922729699251683E-4 0.0 0.02387518149876123 1.316162155389263E-4 44-45 0.0 6.975659423563093E-4 0.0 0.02954784038848895 1.316162155389263E-4 46-47 0.0 7.370508070179872E-4 0.0 0.03544424684463285 1.447778370928189E-4 48-49 0.0 7.370508070179872E-4 0.0 0.04109058249125279 1.842627017544968E-4 50-51 0.0 7.896972932335577E-4 0.0 0.046671110030103255 1.842627017544968E-4 52-53 0.0 7.896972932335577E-4 0.0 0.05189627378699863 2.237475664161747E-4 54-55 0.0 7.896972932335577E-4 0.0 0.057713710513819176 2.632324310778526E-4 56-57 0.0 8.16020536341343E-4 0.0 0.06375489480705589 2.763940526317452E-4 58-59 0.0 8.291821578952357E-4 0.0 0.06995401855893932 2.895556741856378E-4 60-61 0.0 8.423437794491282E-4 0.0 0.07592939474440658 2.895556741856378E-4 62-63 0.0 8.555054010030208E-4 0.0 0.08161521525568818 3.158789172934231E-4 64-65 0.0 9.739599949880546E-4 0.0 0.08682721739102967 3.290405388473157E-4 66-67 0.0 9.739599949880546E-4 0.0 0.09207870439103283 3.5536378195510096E-4 68-69 0.0 9.739599949880546E-4 0.0 0.09739599949880545 3.685254035089936E-4 70-71 0.0 9.871216165419471E-4 0.0 0.10173933461159002 3.9484864661677884E-4 72-73 0.0 0.0010002832380958397 0.0 0.1054903967544494 5.001416190479199E-4 74-75 0.0 0.0010134448596497325 0.0 0.1085570545765064 5.264648621557052E-4 76-77 0.0 0.0010397681027575177 0.0 0.1115710659123478 5.264648621557052E-4 78-79 0.0 0.0010529297243114103 0.0 0.1135453091454317 5.264648621557052E-4 80-81 0.0 0.0010529297243114103 0.0 0.11422971346623412 5.264648621557052E-4 82-83 0.0 0.0010529297243114103 0.0 0.11476933994994372 5.527881052634904E-4 84-85 0.0 0.0010529297243114103 0.0 0.11488779454392875 5.527881052634904E-4 86-87 0.0 0.0010529297243114103 0.0 0.11508521886723715 5.527881052634904E-4 88 0.0 0.001131899453634766 0.0 0.11508521886723715 5.527881052634904E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5175 0.0 52.591904 1 GTATCAA 9740 0.0 37.096508 1 CTTATAC 3365 0.0 35.369404 1 TCAACGC 11835 0.0 30.419249 4 ATCAACG 11920 0.0 30.34547 3 CAACGCA 12070 0.0 29.791653 5 TATCAAC 12370 0.0 29.243862 2 AACGCAG 12400 0.0 29.03321 6 TATACAC 4785 0.0 28.526094 3 TTATACA 5135 0.0 25.42082 2 ACGCAGA 14375 0.0 25.07397 7 CGCAGAG 14795 0.0 24.391005 8 GTGGTAT 2515 0.0 22.728743 1 TGGTATC 2490 0.0 21.929018 2 ACACATC 5760 0.0 21.772041 6 TACACAT 6380 0.0 21.662003 5 GCAGAGT 16920 0.0 21.327715 9 ACATCTC 5945 0.0 21.309776 8 GAGTACT 9260 0.0 19.899723 12-13 CACATCT 6400 0.0 19.594835 7 >>END_MODULE