##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139453_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5446553 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.56652455231777 18.0 18.0 32.0 18.0 33.0 2 29.820316813221133 32.0 27.0 33.0 25.0 33.0 3 31.07367246770572 33.0 31.0 33.0 28.0 33.0 4 32.15393662744125 33.0 32.0 33.0 31.0 33.0 5 32.55474701155024 33.0 33.0 33.0 32.0 34.0 6 37.03912547991363 38.0 37.0 38.0 36.0 38.0 7 37.02899081308857 38.0 38.0 38.0 35.0 38.0 8 37.35004304557396 38.0 38.0 38.0 37.0 38.0 9 37.46550065702105 38.0 38.0 38.0 37.0 38.0 10-11 37.43872124259141 38.0 38.0 38.0 37.0 38.0 12-13 37.53535961184991 38.0 38.0 38.0 37.5 38.0 14-15 37.5432376220336 38.0 38.0 38.0 37.5 38.0 16-17 37.57448986542498 38.0 38.0 38.0 38.0 38.0 18-19 37.574368504263155 38.0 38.0 38.0 38.0 38.0 20-21 37.5780777607272 38.0 38.0 38.0 38.0 38.0 22-23 37.584963516893716 38.0 38.0 38.0 38.0 38.0 24-25 37.59162458973496 38.0 38.0 38.0 38.0 38.0 26-27 37.56349169474794 38.0 38.0 38.0 38.0 38.0 28-29 37.54120663057035 38.0 38.0 38.0 38.0 38.0 30-31 37.53690045409529 38.0 38.0 38.0 38.0 38.0 32-33 37.44646019618058 38.0 38.0 38.0 37.0 38.0 34-35 37.49778710485933 38.0 38.0 38.0 37.5 38.0 36-37 37.48797284234011 38.0 38.0 38.0 37.5 38.0 38-39 37.4774427558642 38.0 38.0 38.0 38.0 38.0 40-41 37.46371837546039 38.0 38.0 38.0 38.0 38.0 42-43 37.4286435152555 38.0 38.0 38.0 37.0 38.0 44-45 37.39219743547136 38.0 38.0 38.0 37.0 38.0 46-47 37.363023961218765 38.0 38.0 38.0 37.0 38.0 48-49 37.24747999790926 38.0 38.0 38.0 37.0 38.0 50-51 37.23510120635311 38.0 38.0 38.0 37.0 38.0 52-53 37.240987657805704 38.0 38.0 38.0 37.0 38.0 54-55 37.22411600215358 38.0 38.0 38.0 37.0 38.0 56-57 37.168933198152075 38.0 38.0 38.0 36.5 38.0 58-59 37.15145613542353 38.0 38.0 38.0 36.0 38.0 60-61 37.16383032347548 38.0 38.0 38.0 36.0 38.0 62-63 37.166702059484024 38.0 38.0 38.0 36.0 38.0 64-65 37.1702149054649 38.0 38.0 38.0 36.0 38.0 66-67 37.10161689792918 38.0 38.0 38.0 36.0 38.0 68-69 37.12012339372323 38.0 38.0 38.0 36.0 38.0 70-71 37.13285915907577 38.0 38.0 38.0 36.0 38.0 72-73 37.14529545301963 38.0 38.0 38.0 36.0 38.0 74-75 37.12876414742471 38.0 38.0 38.0 36.0 38.0 76-77 37.09615635272705 38.0 38.0 38.0 36.0 38.0 78-79 37.095010883350554 38.0 38.0 38.0 36.0 38.0 80-81 37.09200988670078 38.0 38.0 38.0 36.0 38.0 82-83 37.03323059983495 38.0 38.0 38.0 36.0 38.0 84-85 37.028911397475795 38.0 38.0 38.0 36.0 38.0 86-87 37.01932174336408 38.0 38.0 38.0 36.0 38.0 88-89 36.99661435889293 38.0 38.0 38.0 36.0 38.0 90-91 36.96675602607755 38.0 38.0 38.0 35.5 38.0 92-93 36.950256383380434 38.0 38.0 38.0 35.0 38.0 94-95 36.942543113741934 38.0 38.0 38.0 35.0 38.0 96-97 36.91675133570868 38.0 38.0 38.0 35.0 38.0 98-99 36.93772797661196 38.0 38.0 38.0 35.0 38.0 100 35.52620677931675 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 18.0 21 52.0 22 223.0 23 712.0 24 1696.0 25 3475.0 26 6418.0 27 11009.0 28 18156.0 29 27238.0 30 36408.0 31 47161.0 32 59863.0 33 80754.0 34 124628.0 35 243567.0 36 894837.0 37 3890333.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.30645676265337 22.872080745381528 14.549863005096986 23.271599486868116 2 14.571979534517506 20.557530892125815 41.432741687183075 23.437747886173607 3 18.436004156026137 25.49950436505758 30.601450569892975 25.46304090902331 4 13.170568614681615 17.968942925920302 38.45999478936494 30.40049367003314 5 13.896807760798435 37.162531972056456 35.01350303577327 13.927157231371842 6 30.47217203247632 37.874431773637376 18.277486696631794 13.3759094972545 7 27.16204175374774 32.83537312498382 22.42879120059972 17.573793920668724 8 24.505370644515896 37.297075783527674 20.48148618034195 17.716067391614477 9 25.603055730844808 17.776601090634756 21.314765503980222 35.30557767454021 10-11 24.572220264817034 27.184936968390833 28.116113071882342 20.12672969490979 12-13 25.332526829354272 24.580041725472974 28.58606167974497 21.501369765427786 14-15 22.461031775510126 26.011993273543837 26.33446328347489 25.192511667471152 16-17 21.959090455926898 29.21704792003309 27.017867998346844 21.80599362569317 18-19 21.939353201924224 28.226448911816338 28.8983968392486 20.935801047010834 20-21 22.784241068461387 27.272547840938177 28.872542773450625 21.07066831714981 22-23 22.572711940294536 27.123396505332042 28.71496328174052 21.588928272632906 24-25 22.247553267957386 27.291672347559942 28.79705627357456 21.663718110908114 26-27 22.164881289669623 27.44106125596476 28.76591410595205 21.628143348413566 28-29 22.1199755918575 27.481674373590632 28.790282230400116 21.608067804151755 30-31 22.382784010098238 27.365155499061935 28.68697200439444 21.565088486445394 32-33 22.14905276795452 27.568799179694736 28.59958817079425 21.6825598815565 34-35 22.318760602700163 27.48303914259956 28.656800932368125 21.54139932233215 36-37 22.30018517591712 27.38554404462017 28.634823452650387 21.679447326812323 38-39 22.13838094339097 27.604139245499308 28.70021872947926 21.55726108163046 40-41 22.37106307978606 27.46815541899284 28.529800827813794 21.6309806734073 42-43 22.258110828064652 27.575768380584986 28.384573169270777 21.781547622079586 44-45 22.309288185000735 27.65132357503267 28.280832307573174 21.75855593239342 46-47 22.403231006317057 27.67540285783678 28.01457037838625 21.906795757459918 48-49 22.348099313766788 27.81410626873261 27.93677107100504 21.901023346495563 50-51 22.348740237765043 27.916657824282982 27.86081938816416 21.873782549787812 52-53 22.518483542149557 27.857099367526516 27.7263083732022 21.89810871712173 54-55 22.484910330967462 27.79126784029223 27.772110744602735 21.95171108413757 56-57 22.463782112231396 27.946380302009043 27.729306944296482 21.860530641463072 58-59 22.463264983475074 27.936841418458226 27.73401524257884 21.865878355487855 60-61 22.51039576599974 27.969661349380186 27.765453834887627 21.754489049732445 62-63 22.477979736006525 28.050369012997876 27.742724841099943 21.728926409895653 64-65 22.462512418844298 28.009488382123028 27.707287519029393 21.820711680003285 66-67 22.596702825040772 28.26431108224386 27.3975101511024 21.74147594161297 68-69 22.46837273813882 27.90834740834292 27.744961035179973 21.87831881833829 70-71 22.54530394862119 27.658368209544953 27.752893588344605 22.043434253489245 72-73 22.574784443712954 27.90292886068391 27.65633731656345 21.865949379039687 74-75 22.368339925911638 28.0274882046123 27.638570941907858 21.965600927568207 76-77 22.48239660242147 27.63551116120646 27.796317097231604 22.085775139140466 78-79 22.421069542416475 27.676692860051833 27.70737091272831 22.194866684803376 80-81 22.463112606859827 27.712498060502615 27.679635503515577 22.14475382912198 82-83 22.499547496192008 27.616633204590197 27.800920601593372 22.082898697624426 84-85 22.50792784004732 27.59618987068721 27.77981922804853 22.11606306121694 86-87 22.412293678229247 27.6480021490953 27.775389137811647 22.164315034863808 88-89 22.475271434554646 27.627842536340204 27.739640030170087 22.157245998935064 90-91 22.516356899786103 27.719461197551254 27.73863038904893 22.025551513613713 92-93 22.58671043706732 27.637707219203644 27.64916993012776 22.12641241360128 94-95 22.398940220089948 27.718718522266727 27.69710676774221 22.185234489901116 96-97 22.550920492520092 27.809818090772893 27.751953485547293 21.887307931159725 98-99 23.60891628049016 29.705963639358846 27.956235027053296 18.728885053097706 100 30.00314137002318 40.8080346271434 29.188824002833417 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1425.0 1 1290.5 2 1162.0 3 1261.5 4 1562.5 5 2055.5 6 2545.5 7 3349.0 8 4403.0 9 5185.5 10 5560.0 11 5896.0 12 6682.0 13 8370.0 14 11969.0 15 16110.0 16 19091.5 17 20812.0 18 20802.5 19 19441.0 20 17846.0 21 16605.0 22 16851.5 23 19560.0 24 24472.5 25 31756.5 26 41664.5 27 52875.5 28 63710.0 29 75784.5 30 87833.5 31 99594.0 32 113516.5 33 128008.5 34 141316.5 35 153920.0 36 167974.5 37 179798.0 38 189028.0 39 197200.0 40 205944.0 41 213644.5 42 217735.0 43 221796.0 44 225639.5 45 228446.0 46 229587.5 47 229644.5 48 228834.0 49 227164.0 50 223288.0 51 216264.0 52 206679.5 53 195096.0 54 182122.5 55 168867.5 56 153618.0 57 137638.0 58 122226.0 59 104838.5 60 87826.5 61 71113.0 62 55628.5 63 42547.5 64 31623.5 65 23626.0 66 17443.0 67 13075.0 68 9984.5 69 7376.5 70 5355.5 71 3827.5 72 2634.5 73 1700.5 74 1078.5 75 713.0 76 473.5 77 303.5 78 212.0 79 141.0 80 97.5 81 62.0 82 34.5 83 20.5 84 14.0 85 10.5 86 7.0 87 3.0 88 1.0 89 1.0 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.00927191932218414 3 7.344094512621102E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.8362449598518813E-4 26-27 3.397470849240996E-4 28-29 0.002663771178014225 30-31 0.012641424209513356 32-33 0.007903224008778657 34-35 5.909912798313237E-4 36-37 5.560835259699348E-5 38-39 7.268255178002831E-4 40-41 1.875002578128545E-5 42-43 0.001650710272332294 44-45 7.126032918471532E-4 46-47 0.001599956772425406 48-49 0.0032551140062629554 50-51 0.0020442524188373384 52-53 0.0 54-55 0.0017774308934868613 56-57 0.04943756805377788 58-59 0.06881273456891981 60-61 0.047506125590300013 62-63 0.013899434331745463 64-65 0.0 66-67 0.0 68-69 2.2973871606968017E-4 70-71 0.0018651817150651465 72-73 0.006113114736146804 74-75 0.009628179644677284 76-77 0.020065609675972314 78-79 0.014217566994278577 80-81 0.006197185397181692 82-83 0.03900314073820709 84-85 0.026768366982399292 86-87 0.008416883951588626 88-89 0.0027493248116483393 90-91 0.004155467257985413 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 40.0 20-21 160.0 22-23 369.0 24-25 538.0 26-27 1364.0 28-29 3279.0 30-31 9865.0 32-33 12409.0 34-35 17368.0 36-37 27279.0 38-39 32658.0 40-41 32020.0 42-43 36332.0 44-45 42875.0 46-47 43039.0 48-49 40969.0 50-51 37592.0 52-53 35529.0 54-55 38509.0 56-57 39615.0 58-59 40182.0 60-61 38532.0 62-63 37327.0 64-65 38895.0 66-67 41154.0 68-69 42876.0 70-71 42853.0 72-73 39523.0 74-75 40479.0 76-77 42854.0 78-79 44617.0 80-81 44310.0 82-83 41612.0 84-85 41290.0 86-87 42469.0 88-89 44805.0 90-91 45131.0 92-93 44741.0 94-95 51774.0 96-97 165548.0 98-99 1276563.0 100-101 2747209.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.73447725970833 #Duplication Level Percentage of deduplicated Percentage of total 1 91.89644226826577 81.54382766701528 2 6.024018448985899 10.690762561472052 3 1.2191347211975967 3.24537846583887 4 0.4074237823705259 1.4461014540728714 5 0.19126962669177108 0.8486105170076931 6 0.08500871162272974 0.452592215301853 7 0.056520110414997826 0.351069771663508 8 0.031861627658462226 0.2261779899933688 9 0.021236796106752272 0.16959924010833044 >10 0.06541090287194885 0.8881997031580522 >50 0.001344410555354236 0.08095001848311742 >100 2.994405786049799E-4 0.04281315479138154 >500 2.9152679621256948E-5 0.01391724109358649 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.672047256310551E-5 2 0.0 5.5080708844658265E-5 0.0 0.0 3.672047256310551E-5 3 0.0 5.5080708844658265E-5 0.0 1.8360236281552755E-5 3.672047256310551E-5 4 0.0 1.2852165397086928E-4 0.0 1.8360236281552755E-5 3.672047256310551E-5 5 0.0 1.2852165397086928E-4 0.0 1.8360236281552755E-5 3.672047256310551E-5 6 1.8360236281552755E-5 1.2852165397086928E-4 0.0 3.672047256310551E-5 5.5080708844658265E-5 7 1.8360236281552755E-5 1.2852165397086928E-4 0.0 3.672047256310551E-5 5.5080708844658265E-5 8 1.8360236281552755E-5 1.2852165397086928E-4 0.0 3.672047256310551E-5 5.5080708844658265E-5 9 1.8360236281552755E-5 2.3868307166018582E-4 0.0 9.180118140776377E-5 5.5080708844658265E-5 10-11 1.8360236281552755E-5 2.3868307166018582E-4 0.0 9.180118140776377E-5 5.5080708844658265E-5 12-13 1.8360236281552755E-5 2.3868307166018582E-4 0.0 9.180118140776377E-5 5.5080708844658265E-5 14-15 1.8360236281552755E-5 3.304842530679496E-4 0.0 1.0098129954854015E-4 9.180118140776378E-5 16-17 3.672047256310551E-5 3.304842530679496E-4 0.0 1.1016141768931653E-4 1.1016141768931653E-4 18-19 3.672047256310551E-5 3.4884448934950234E-4 0.0 1.1016141768931653E-4 1.1016141768931653E-4 20-21 3.672047256310551E-5 3.8556496191260786E-4 0.0 1.1016141768931653E-4 1.1934153583009291E-4 22-23 3.672047256310551E-5 4.3146555261648975E-4 0.0 1.1934153583009291E-4 1.560620083931984E-4 24-25 3.672047256310551E-5 4.6818602517959527E-4 0.0 1.4688189025242204E-4 1.8360236281552753E-4 26-27 3.672047256310551E-5 4.957263796019244E-4 0.0 1.7442224467475117E-4 1.8360236281552753E-4 28-29 3.672047256310551E-5 4.957263796019244E-4 0.0 4.039251981941606E-4 1.8360236281552753E-4 30-31 3.672047256310551E-5 5.875275610096882E-4 0.0 0.0010740738224708363 1.8360236281552753E-4 32-33 3.672047256310551E-5 5.875275610096882E-4 0.0 0.0025153523705727272 2.019625990970803E-4 34-35 3.672047256310551E-5 7.252293331213338E-4 0.0 0.0046635000155144 2.2032283537863306E-4 36-37 3.672047256310551E-5 8.445708689514267E-4 0.0 0.007940802191771566 2.3868307166018582E-4 38-39 3.672047256310551E-5 8.904714596553086E-4 0.0 0.012411519726329662 2.3868307166018582E-4 40-41 3.672047256310551E-5 9.914527592038487E-4 0.0 0.017524845530742107 2.3868307166018582E-4 42-43 3.672047256310551E-5 0.0010373533499077306 0.0 0.022546370153746782 2.3868307166018582E-4 44-45 3.672047256310551E-5 0.0012393159490048109 0.0 0.027714776667003883 2.66223426082515E-4 46-47 3.672047256310551E-5 0.0013770177211164566 0.0 0.03317694696076583 3.121240167863968E-4 48-49 3.672047256310551E-5 0.0013770177211164566 0.0 0.039235824933678234 3.121240167863968E-4 50-51 3.672047256310551E-5 0.0015514399657912078 0.0 0.0446520946367363 3.121240167863968E-4 52-53 3.672047256310551E-5 0.001578980320213537 0.0 0.05027032693889144 3.121240167863968E-4 54-55 3.672047256310551E-5 0.001578980320213537 0.0 0.05527349132561457 3.121240167863968E-4 56-57 3.672047256310551E-5 0.0015973405564950896 0.0 0.06110286634500756 3.121240167863968E-4 58-59 3.672047256310551E-5 0.0016157007927766424 0.0 0.06717092443606076 3.121240167863968E-4 60-61 4.590059070388189E-5 0.0016707815016213006 0.0 0.07330324335409938 3.121240167863968E-4 62-63 7.344094512621102E-5 0.0017442224467475117 0.0 0.0789673762469584 3.121240167863968E-4 64-65 7.344094512621102E-5 0.0019829055184076975 0.0 0.08487019221147761 3.121240167863968E-4 66-67 7.344094512621102E-5 0.0019829055184076975 0.0 0.09082808888484148 3.121240167863968E-4 68-69 7.344094512621102E-5 0.0020104458728300266 0.0 0.09620763811533643 3.121240167863968E-4 70-71 7.344094512621102E-5 0.002019625990970803 0.0 0.10094457907597704 3.121240167863968E-4 72-73 9.180118140776377E-5 0.002019625990970803 0.0 0.1045431853871614 3.4884448934950234E-4 74-75 9.180118140776377E-5 0.002074706699815461 0.0 0.10749000331035061 3.4884448934950234E-4 76-77 1.0098129954854015E-4 0.002175687999364001 0.0 0.11051026217866602 3.4884448934950234E-4 78-79 1.1016141768931653E-4 0.00223076870820866 0.0 0.11237382616124364 3.4884448934950234E-4 80-81 1.1016141768931653E-4 0.002239948826349436 0.0 0.1131633163213504 3.947450800533842E-4 82-83 1.1016141768931653E-4 0.002239948826349436 0.0 0.11356724151954456 4.406456707572661E-4 84-85 1.1016141768931653E-4 0.002239948826349436 0.0 0.11377838423678242 4.406456707572661E-4 86-87 1.1016141768931653E-4 0.002239948826349436 0.0 0.11384264506376784 4.406456707572661E-4 88 1.1016141768931653E-4 0.0022766692989125417 0.0 0.11385182518190863 4.406456707572661E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7300 0.0 48.47717 1 GTATCAA 13300 0.0 37.28313 1 TCAACGC 15930 0.0 31.36639 4 ATCAACG 16110 0.0 31.04255 3 CAACGCA 16510 0.0 30.186546 5 TATCAAC 16680 0.0 30.036755 2 AACGCAG 17035 0.0 29.231052 6 GTGGTAT 3705 0.0 26.281118 1 TGGTATC 3510 0.0 26.030273 2 ACGCAGA 19830 0.0 25.11099 7 CGCAGAG 20280 0.0 24.553795 8 GCAGAGT 23385 0.0 21.256924 9 GAGTACT 12390 0.0 19.83525 12-13 CAGAGTA 22940 0.0 18.631088 10-11 GTACTTT 13585 0.0 18.059124 14-15 AGAGTAC 21445 0.0 17.899931 10-11 GTACATG 17925 0.0 16.91868 1 TACATGG 17900 0.0 16.918344 2 AGTACTT 13685 0.0 16.547922 12-13 ACATGGG 18010 0.0 16.479603 3 >>END_MODULE