##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139452_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3944402 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.45244881226609 18.0 18.0 32.0 18.0 33.0 2 29.676753282246587 32.0 27.0 33.0 25.0 33.0 3 31.014428803149375 33.0 30.0 33.0 28.0 33.0 4 32.14808100188571 33.0 32.0 33.0 31.0 33.0 5 32.560688793890684 33.0 33.0 33.0 32.0 34.0 6 37.03592331613258 38.0 37.0 38.0 35.0 38.0 7 37.04087058063554 38.0 38.0 38.0 35.0 38.0 8 37.34625426110219 38.0 38.0 38.0 37.0 38.0 9 37.46495058059498 38.0 38.0 38.0 37.0 38.0 10-11 37.443425517987265 38.0 38.0 38.0 37.0 38.0 12-13 37.54059931011089 38.0 38.0 38.0 37.5 38.0 14-15 37.553254587133864 38.0 38.0 38.0 37.5 38.0 16-17 37.58319372619728 38.0 38.0 38.0 38.0 38.0 18-19 37.584605727306695 38.0 38.0 38.0 38.0 38.0 20-21 37.587437137643036 38.0 38.0 38.0 38.0 38.0 22-23 37.59559344932526 38.0 38.0 38.0 38.0 38.0 24-25 37.60172946047837 38.0 38.0 38.0 38.0 38.0 26-27 37.57530086452985 38.0 38.0 38.0 38.0 38.0 28-29 37.55416016283179 38.0 38.0 38.0 38.0 38.0 30-31 37.547913224129886 38.0 38.0 38.0 38.0 38.0 32-33 37.46188712351207 38.0 38.0 38.0 38.0 38.0 34-35 37.506289963420876 38.0 38.0 38.0 38.0 38.0 36-37 37.49323221288503 38.0 38.0 38.0 38.0 38.0 38-39 37.48131456005291 38.0 38.0 38.0 38.0 38.0 40-41 37.46539908490761 38.0 38.0 38.0 38.0 38.0 42-43 37.42775657222018 38.0 38.0 38.0 37.0 38.0 44-45 37.38817913206696 38.0 38.0 38.0 37.0 38.0 46-47 37.35533741317305 38.0 38.0 38.0 37.0 38.0 48-49 37.24365659544218 38.0 38.0 38.0 37.0 38.0 50-51 37.22786321119197 38.0 38.0 38.0 37.0 38.0 52-53 37.231078009335626 38.0 38.0 38.0 37.0 38.0 54-55 37.21346293532044 38.0 38.0 38.0 37.0 38.0 56-57 37.16221089652038 38.0 38.0 38.0 36.5 38.0 58-59 37.14414990898044 38.0 38.0 38.0 36.0 38.0 60-61 37.15665322639387 38.0 38.0 38.0 36.0 38.0 62-63 37.1575427584245 38.0 38.0 38.0 36.0 38.0 64-65 37.16085747384055 38.0 38.0 38.0 36.0 38.0 66-67 37.098700722388706 38.0 38.0 38.0 36.0 38.0 68-69 37.1144324722196 38.0 38.0 38.0 36.0 38.0 70-71 37.12727000431908 38.0 38.0 38.0 36.0 38.0 72-73 37.14217390267679 38.0 38.0 38.0 36.0 38.0 74-75 37.12745677608825 38.0 38.0 38.0 36.0 38.0 76-77 37.095984559707084 38.0 38.0 38.0 36.0 38.0 78-79 37.09317843527346 38.0 38.0 38.0 36.0 38.0 80-81 37.09132547033212 38.0 38.0 38.0 36.0 38.0 82-83 37.03230713429767 38.0 38.0 38.0 36.0 38.0 84-85 37.02790402736576 38.0 38.0 38.0 36.0 38.0 86-87 37.01994034162323 38.0 38.0 38.0 36.0 38.0 88-89 36.99687050121867 38.0 38.0 38.0 36.0 38.0 90-91 36.9709325232201 38.0 38.0 38.0 35.5 38.0 92-93 36.95578983258521 38.0 38.0 38.0 35.0 38.0 94-95 36.94788652306461 38.0 38.0 38.0 35.0 38.0 96-97 36.92202646254581 38.0 38.0 38.0 35.0 38.0 98-99 36.94053863276263 38.0 38.0 38.0 35.0 38.0 100 35.530327941812914 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 2.0 20 11.0 21 38.0 22 167.0 23 429.0 24 1105.0 25 2368.0 26 4528.0 27 7921.0 28 13445.0 29 20190.0 30 26449.0 31 33255.0 32 42503.0 33 57552.0 34 89400.0 35 176167.0 36 663932.0 37 2804939.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.16829471235437 23.035304210879115 14.519767508484177 23.27663356828234 2 14.445851604225535 20.419688573989347 41.55718076171714 23.577279060067973 3 18.28389615657641 25.589924956900923 30.71186999290133 25.414308893621335 4 13.040785396620326 17.871504983518413 38.810547200817766 30.277162419043496 5 13.77927503332571 36.91079154710904 35.27404154039066 14.035891879174587 6 30.135214412729738 37.81926892847129 18.52610357666384 13.519413082135138 7 26.873072267988913 32.61962142803903 22.88012225934375 17.62718404462831 8 24.353957836954756 37.00137562043626 20.79047723837479 17.854189304234204 9 25.419493246378032 17.501689736492377 21.618181919591358 35.46063509753824 10-11 24.498593196129605 26.959574607253522 28.363095343730176 20.1787368528867 12-13 25.323534467328635 24.308792562218557 28.875188178081242 21.49248479237157 14-15 22.434947046472445 25.692525761826506 26.65979532512153 25.212731866579524 16-17 21.81472628804062 28.874072673120033 27.337109655658832 21.974091383180514 18-19 21.798754285186956 27.856871586618198 29.315064742386802 21.02930938580804 20-21 22.653733251545592 26.91753395008793 29.282634569162298 21.14609822920418 22-23 22.421138500992917 26.79424290615724 29.154494187951734 21.63012440489811 24-25 22.11502292747807 26.949716755093405 29.228480759339515 21.70677955808901 26-27 22.042090803124395 27.089378576189745 29.167266304039796 21.701264316646064 28-29 21.984817062729505 27.141485441757517 29.207569905566444 21.666127589946534 30-31 22.274765137654285 26.968977474291794 29.12163577703599 21.63462161101793 32-33 22.01877414668463 27.165979078491908 29.052972912460675 21.762273862362786 34-35 22.20263853144509 27.163845862793355 29.06487090130929 21.568644704452264 36-37 22.188774823845435 27.029852677706867 29.03144011359088 21.74993238485682 38-39 22.010562625084226 27.207256243300844 29.094761608421265 21.68741952319367 40-41 22.301945371826932 27.06956593057828 28.927712624542316 21.700776073052474 42-43 22.17574765968779 27.16317983556064 28.786655284289473 21.874417220462092 44-45 22.217443144193545 27.28878961022304 28.630208039705856 21.863559205877557 46-47 22.29166056282441 27.320877473779554 28.361025222777535 22.0264367406185 48-49 22.313461990367372 27.381992571501407 28.273808289847064 22.030737148284157 50-51 22.278426148028004 27.512983700232184 28.171045677568372 22.037544474171437 52-53 22.400992251567516 27.44853401570558 28.070647920272023 22.079825812454885 54-55 22.38861387155256 27.426259407961407 28.077283355051474 22.107843365434558 56-57 22.34699927947026 27.522744740533344 28.115255484269724 22.01500049572667 58-59 22.352322110529176 27.486368853727395 28.144432836093223 22.01687619965021 60-61 22.43171809631767 27.45549509707754 28.195255216398586 21.917531590206206 62-63 22.402541426422715 27.515501732983765 28.155727622456116 21.9262292181374 64-65 22.33515526521474 27.424677094789978 28.17369987742952 22.066467762565757 66-67 22.419575392217112 27.529889086731508 28.029903554242875 22.02063196680851 68-69 22.3224270828021 27.25029774501287 28.37136202233847 22.05591314984656 70-71 22.46337993832874 27.152340806033 28.201899305868274 22.182379949769988 72-73 22.465453601062404 27.41691533124669 28.12108781752578 21.996543250165132 74-75 22.305894832776794 27.531222219732115 28.037306798741994 22.125576148749094 76-77 22.432074896002494 27.298544374255584 28.074281843689043 22.19509888605288 78-79 22.32731621526985 27.400608956575102 27.976149226193204 22.295925601961844 80-81 22.36759566683022 27.473011544379876 27.99717141075427 22.16222137803563 82-83 22.485608740893284 27.359817468447435 28.00873977391572 22.145834016743564 84-85 22.500749919828035 27.374577380345993 27.916780011430486 22.20789268839548 86-87 22.351798447251184 27.40473767629043 27.994201558137117 22.24926231832127 88-89 22.42779883813431 27.424570544029592 27.93333304516426 22.21429757267184 90-91 22.478118333669396 27.47244300150792 27.874571113514087 22.174867551308594 92-93 22.550432017349404 27.44137164485939 27.865601655365758 22.142594682425447 94-95 22.35044889813506 27.5336872111674 27.875307029384828 22.24055686131271 96-97 22.52794631350614 27.621660766282623 27.866771736628365 21.983621183582873 98-99 23.61159736246377 29.521298172233344 28.08762651685467 18.77947794844822 100 30.04146720019153 40.596419681215146 29.36211311859333 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 928.0 1 909.5 2 965.5 3 1146.5 4 1487.0 5 2017.5 6 2479.5 7 3095.5 8 3933.0 9 4444.5 10 4544.0 11 4733.5 12 5399.5 13 6834.0 14 9741.0 15 13232.0 16 15856.0 17 17282.0 18 17090.5 19 15674.0 20 14185.0 21 13124.5 22 13143.5 23 14819.0 24 18063.5 25 23154.5 26 30219.5 27 38346.0 28 46466.0 29 55397.0 30 64370.0 31 73008.0 32 82183.0 33 92261.5 34 102484.0 35 111616.5 36 121298.5 37 129938.5 38 136962.5 39 142633.5 40 147962.0 41 152815.0 42 155376.5 43 158460.5 44 162359.5 45 164747.5 46 165067.5 47 165808.0 48 166921.0 49 165379.5 50 161736.0 51 157575.0 52 151180.5 53 142717.5 54 133663.5 55 123567.5 56 112481.5 57 101082.0 58 89428.5 59 76729.0 60 64077.0 61 51887.0 62 40900.0 63 31465.0 64 23270.0 65 17194.0 66 12933.0 67 9911.0 68 7516.5 69 5575.0 70 4034.5 71 2882.0 72 2046.0 73 1347.5 74 892.0 75 601.5 76 362.5 77 214.5 78 138.0 79 98.0 80 73.0 81 45.0 82 27.0 83 20.5 84 17.0 85 14.0 86 9.5 87 5.5 88 2.5 89 1.0 90 1.0 91 1.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.007276134633336054 3 5.070477096401432E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.9016921510318834E-4 26-27 1.394749301420793E-4 28-29 0.0023845648638426147 30-31 0.010753183710462848 32-33 0.006054988967453925 34-35 4.84595166010189E-4 36-37 3.8399498656145546E-5 38-39 6.050609096794683E-4 40-41 0.0 42-43 0.0011997778845985816 44-45 6.17640550020737E-4 46-47 0.001458272268182103 48-49 0.0028754479011637675 50-51 0.00173962576199654 52-53 0.0 54-55 0.001492272697091232 56-57 0.04273297823737507 58-59 0.059785701320380094 60-61 0.0404416832611859 62-63 0.011365088683782613 64-65 0.0 66-67 0.0 68-69 1.5982383345310435E-4 70-71 0.0011441117263237812 72-73 0.0044417839803507315 74-75 0.0077685335548361364 76-77 0.015969801241572875 78-79 0.011726316305656029 80-81 0.005477168285534014 82-83 0.033352247445701186 84-85 0.02255137145922282 86-87 0.006354617445690998 88-89 0.0020011340827073517 90-91 0.003026104928812904 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 28.0 20-21 122.0 22-23 324.0 24-25 405.0 26-27 1014.0 28-29 2422.0 30-31 7313.0 32-33 9248.0 34-35 12509.0 36-37 20756.0 38-39 25265.0 40-41 24459.0 42-43 27720.0 44-45 32649.0 46-47 33571.0 48-49 31535.0 50-51 28680.0 52-53 27209.0 54-55 29025.0 56-57 30454.0 58-59 30275.0 60-61 29502.0 62-63 28920.0 64-65 30009.0 66-67 31667.0 68-69 32383.0 70-71 32366.0 72-73 30180.0 74-75 30832.0 76-77 31975.0 78-79 33475.0 80-81 33000.0 82-83 31425.0 84-85 30699.0 86-87 31671.0 88-89 32876.0 90-91 33946.0 92-93 33234.0 94-95 38402.0 96-97 120137.0 98-99 917922.0 100-101 1954798.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.55312143567811 #Duplication Level Percentage of deduplicated Percentage of total 1 92.01502167308374 81.48217388123136 2 5.8512096137035075 10.362857509357877 3 1.2269965872444881 3.2596313337427123 4 0.4191073379254907 1.4845305195959901 5 0.19801172880804202 0.8767278333413552 6 0.0932898061114814 0.49566621175805264 7 0.0521911597290397 0.32351830737481674 8 0.036965913444343135 0.2618757617774147 9 0.023539381900759347 0.18760371695808709 >10 0.08200035368894909 1.1122987301053502 >50 0.0011315494215502436 0.06591530532387281 >100 4.940315982475358E-4 0.0681671778664322 >500 4.0863340386012025E-5 0.019033711566652057 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 2.535238548200716E-5 0.0 5 0.0 0.0 0.0 2.535238548200716E-5 0.0 6 2.535238548200716E-5 0.0 0.0 2.535238548200716E-5 0.0 7 2.535238548200716E-5 0.0 0.0 2.535238548200716E-5 0.0 8 2.535238548200716E-5 0.0 0.0 2.535238548200716E-5 0.0 9 2.535238548200716E-5 7.605715644602148E-5 0.0 2.535238548200716E-5 0.0 10-11 2.535238548200716E-5 7.605715644602148E-5 0.0 2.535238548200716E-5 0.0 12-13 2.535238548200716E-5 7.605715644602148E-5 0.0 2.535238548200716E-5 0.0 14-15 2.535238548200716E-5 7.605715644602148E-5 0.0 3.802857822301074E-5 2.535238548200716E-5 16-17 7.605715644602148E-5 7.605715644602148E-5 0.0 5.070477096401432E-5 2.535238548200716E-5 18-19 7.605715644602148E-5 7.605715644602148E-5 0.0 5.070477096401432E-5 2.535238548200716E-5 20-21 7.605715644602148E-5 7.605715644602148E-5 0.0 5.070477096401432E-5 2.535238548200716E-5 22-23 7.605715644602148E-5 7.605715644602148E-5 0.0 7.605715644602148E-5 2.535238548200716E-5 24-25 7.605715644602148E-5 1.1408573466903221E-4 0.0 1.0140954192802863E-4 2.535238548200716E-5 26-27 7.605715644602148E-5 1.2676192741003579E-4 0.0 1.5211431289204296E-4 2.535238548200716E-5 28-29 7.605715644602148E-5 1.2676192741003579E-4 0.0 4.0563816771211454E-4 2.535238548200716E-5 30-31 7.605715644602148E-5 1.5211431289204296E-4 0.0 0.0013183240450643722 2.535238548200716E-5 32-33 7.605715644602148E-5 1.5211431289204296E-4 0.0 0.003574686352963009 2.535238548200716E-5 34-35 7.605715644602148E-5 1.9014289111505368E-4 0.0 0.006452182105170822 2.535238548200716E-5 36-37 1.0140954192802863E-4 2.0281908385605727E-4 0.0 0.010990259106450103 2.535238548200716E-5 38-39 1.0140954192802863E-4 2.2817146933806442E-4 0.0 0.018469212823642216 2.535238548200716E-5 40-41 1.0140954192802863E-4 2.5352385482007157E-4 0.0 0.02625239516661841 2.535238548200716E-5 42-43 1.5211431289204296E-4 2.6620004756107516E-4 0.0 0.0336426155346235 2.535238548200716E-5 44-45 1.5211431289204296E-4 3.2958101126609305E-4 0.0 0.042161017056577904 3.802857822301074E-5 46-47 1.5211431289204296E-4 3.8028578223010736E-4 0.0 0.050552656651122276 5.070477096401432E-5 48-49 1.5211431289204296E-4 3.8028578223010736E-4 0.0 0.05936261060611976 5.070477096401432E-5 50-51 2.0281908385605727E-4 4.81695324158136E-4 0.0 0.06856552653608836 5.070477096401432E-5 52-53 2.0281908385605727E-4 4.943715168991396E-4 0.0 0.07803464251361802 5.070477096401432E-5 54-55 2.1549527659706086E-4 5.197239023811467E-4 0.0 0.0864262821081624 5.070477096401432E-5 56-57 2.2817146933806442E-4 5.324000951221503E-4 0.0 0.09219394980531903 6.338096370501789E-5 58-59 2.2817146933806442E-4 5.450762878631539E-4 0.0 0.09816443658633171 1.0140954192802863E-4 60-61 2.2817146933806442E-4 5.577524806041575E-4 0.0 0.10433774245120046 1.0140954192802863E-4 62-63 2.5352385482007157E-4 5.577524806041575E-4 0.0 0.11020681969028512 1.0140954192802863E-4 64-65 2.9155243304308234E-4 6.591620225321861E-4 0.0 0.11602519215840576 1.0140954192802863E-4 66-67 3.0422862578408593E-4 7.098667934962005E-4 0.0 0.12161539315718833 1.0140954192802863E-4 68-69 3.0422862578408593E-4 7.352191789782076E-4 0.0 0.12666051786810778 1.0140954192802863E-4 70-71 3.0422862578408593E-4 7.478953717192111E-4 0.0 0.1320986045539983 1.0140954192802863E-4 72-73 3.2958101126609305E-4 7.732477572012183E-4 0.0 0.13626907196578847 1.2676192741003579E-4 74-75 3.2958101126609305E-4 8.112763354242291E-4 0.0 0.13962826304215442 1.2676192741003579E-4 76-77 3.2958101126609305E-4 8.619811063882434E-4 0.0 0.14218885397583714 1.2676192741003579E-4 78-79 3.2958101126609305E-4 8.873334918702505E-4 0.0 0.14406493050150568 1.2676192741003579E-4 80-81 3.2958101126609305E-4 8.873334918702505E-4 0.0 0.1448128258732249 1.2676192741003579E-4 82-83 3.2958101126609305E-4 9.000096846112541E-4 0.0 0.14538325454657003 1.2676192741003579E-4 84-85 3.2958101126609305E-4 9.126858773522577E-4 0.0 0.14573818794331816 1.2676192741003579E-4 86-87 3.4225720400709664E-4 9.126858773522577E-4 0.0 0.14586494987072818 1.2676192741003579E-4 88 3.8028578223010736E-4 9.380382628342649E-4 0.0 0.14587762606346918 1.2676192741003579E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5530 0.0 49.135036 1 GTATCAA 10120 0.0 37.218353 1 TCAACGC 12185 0.0 31.433643 4 ATCAACG 12255 0.0 31.428118 3 CAACGCA 12475 0.0 30.70292 5 TATCAAC 12715 0.0 30.59535 2 AACGCAG 12865 0.0 29.871632 6 ACGCAGA 14790 0.0 25.983673 7 CGCAGAG 15105 0.0 25.41357 8 GCAGAGT 17495 0.0 21.893051 9 TGGTATC 2705 0.0 21.13073 2 GAGTACT 10170 0.0 20.403553 12-13 GTGGTAT 3040 0.0 19.924696 1 CAGAGTA 17325 0.0 19.215141 10-11 GTACTTT 11075 0.0 18.582333 14-15 AGAGTAC 16145 0.0 17.911648 10-11 GTACATG 12545 0.0 17.341093 1 TACATGG 12845 0.0 16.902878 2 ACATGGG 12930 0.0 16.328661 3 AGTACTT 11065 0.0 16.305452 12-13 >>END_MODULE