##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139450_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4908326 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.464161508424663 18.0 18.0 32.0 18.0 33.0 2 29.684983026799767 32.0 27.0 33.0 25.0 33.0 3 31.0144888501701 33.0 30.0 33.0 28.0 33.0 4 32.13656244511876 33.0 32.0 33.0 31.0 33.0 5 32.55355532619471 33.0 33.0 33.0 32.0 34.0 6 37.03018442540288 38.0 37.0 38.0 35.0 38.0 7 37.023422853331255 38.0 38.0 38.0 35.0 38.0 8 37.33018894832984 38.0 38.0 38.0 37.0 38.0 9 37.44833370888568 38.0 38.0 38.0 37.0 38.0 10-11 37.41788809463756 38.0 38.0 38.0 37.0 38.0 12-13 37.52248404038363 38.0 38.0 38.0 37.5 38.0 14-15 37.53239627930174 38.0 38.0 38.0 37.5 38.0 16-17 37.56336294695992 38.0 38.0 38.0 38.0 38.0 18-19 37.56458097934001 38.0 38.0 38.0 38.0 38.0 20-21 37.56750254445298 38.0 38.0 38.0 38.0 38.0 22-23 37.57356944336372 38.0 38.0 38.0 38.0 38.0 24-25 37.58138442515702 38.0 38.0 38.0 38.0 38.0 26-27 37.55253219297467 38.0 38.0 38.0 38.0 38.0 28-29 37.53008468354706 38.0 38.0 38.0 38.0 38.0 30-31 37.52630261949792 38.0 38.0 38.0 38.0 38.0 32-33 37.43886381872172 38.0 38.0 38.0 37.0 38.0 34-35 37.48431309719925 38.0 38.0 38.0 37.0 38.0 36-37 37.47167638220432 38.0 38.0 38.0 37.0 38.0 38-39 37.45750932426364 38.0 38.0 38.0 37.0 38.0 40-41 37.44808737690634 38.0 38.0 38.0 37.0 38.0 42-43 37.410698860746436 38.0 38.0 38.0 37.0 38.0 44-45 37.37162302023158 38.0 38.0 38.0 37.0 38.0 46-47 37.339485636698264 38.0 38.0 38.0 37.0 38.0 48-49 37.22332728138899 38.0 38.0 38.0 37.0 38.0 50-51 37.20700679627885 38.0 38.0 38.0 37.0 38.0 52-53 37.21299102921308 38.0 38.0 38.0 37.0 38.0 54-55 37.193298232148095 38.0 38.0 38.0 37.0 38.0 56-57 37.13903359222941 38.0 38.0 38.0 36.0 38.0 58-59 37.12067408092986 38.0 38.0 38.0 36.0 38.0 60-61 37.13364212689251 38.0 38.0 38.0 36.0 38.0 62-63 37.13578550924849 38.0 38.0 38.0 36.0 38.0 64-65 37.13891941438506 38.0 38.0 38.0 36.0 38.0 66-67 37.07318617688934 38.0 38.0 38.0 36.0 38.0 68-69 37.08865557267375 38.0 38.0 38.0 36.0 38.0 70-71 37.10080194382755 38.0 38.0 38.0 36.0 38.0 72-73 37.11202905797583 38.0 38.0 38.0 36.0 38.0 74-75 37.09772873216088 38.0 38.0 38.0 36.0 38.0 76-77 37.063648893497785 38.0 38.0 38.0 36.0 38.0 78-79 37.06142390808011 38.0 38.0 38.0 36.0 38.0 80-81 37.05837847652151 38.0 38.0 38.0 36.0 38.0 82-83 36.9987380870041 38.0 38.0 38.0 36.0 38.0 84-85 36.99213549520259 38.0 38.0 38.0 36.0 38.0 86-87 36.985603899653526 38.0 38.0 38.0 36.0 38.0 88-89 36.9609568113988 38.0 38.0 38.0 36.0 38.0 90-91 36.93412987550716 38.0 38.0 38.0 35.0 38.0 92-93 36.917455590850025 38.0 38.0 38.0 35.0 38.0 94-95 36.91023129276805 38.0 38.0 38.0 35.0 38.0 96-97 36.88278291609484 38.0 38.0 38.0 35.0 38.0 98-99 36.9032824831951 38.0 38.0 38.0 35.0 38.0 100 35.40228702579952 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 3.0 20 16.0 21 69.0 22 240.0 23 618.0 24 1526.0 25 3238.0 26 5905.0 27 10355.0 28 17247.0 29 25904.0 30 34474.0 31 44202.0 32 56342.0 33 75984.0 34 116930.0 35 226512.0 36 827071.0 37 3461689.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.8401055675601 23.275939699196833 14.541434289409464 23.3425204438336 2 14.433988502199007 20.566699165324444 41.68080205464869 23.318510277827865 3 18.365107926860574 25.70950898921913 30.61350473196146 25.311878351958832 4 13.066654496869198 17.981344352432988 38.63478098235529 30.31722016834253 5 13.775124146195669 37.09191280285784 35.13715266671366 13.995810384232833 6 30.101077230811484 37.86191055769319 18.531756040654187 13.505256170841138 7 26.8481759361542 32.725943631290995 22.712631557072616 17.71324887548219 8 24.256681402172553 37.329223853509326 20.702577620149924 17.7115171241682 9 25.49806186467647 17.70312322368156 21.517865765232383 35.28094914640959 10-11 24.522556162732467 27.167765547765164 28.14071436982792 20.168963919674447 12-13 25.269867975354533 24.501540851198556 28.74959813182743 21.478993041619486 14-15 22.449211808669595 25.844473248109434 26.475044648623587 25.231270294597387 16-17 21.829917165241266 29.053418619708633 27.17739204771647 21.93927216733363 18-19 21.82144177057514 28.02352573973285 29.128281210335256 21.026751279356752 20-21 22.708915938948703 27.07307427918536 29.062361330865116 21.155648451000822 22-23 22.436927397590175 26.949481609282987 28.995559154161082 21.618031838965752 24-25 22.12136845970244 27.14532436958078 29.048257394504954 21.685049776211823 26-27 22.043420559938255 27.27018001472315 29.022336905438138 21.664062519900455 28-29 22.00862151117489 27.22221514436368 29.087239929042486 21.68192341541894 30-31 22.236521308716327 27.202922196000994 28.936226516300806 21.624329978981873 32-33 22.036030153038986 27.37219627374005 28.88400747438918 21.707766098831783 34-35 22.18142414765555 27.31969759740183 28.934160401605723 21.56471785333689 36-37 22.151388829079785 27.24021125934748 28.897986039304502 21.710413872268237 38-39 22.01812129650162 27.35940474952969 28.983596678292738 21.638877275675952 40-41 22.248325942977274 27.25820978188193 28.84217085194783 21.651293423192968 42-43 22.15737439510204 27.347192342648093 28.632844325123695 21.86258893712617 44-45 22.176327226741734 27.462882985632657 28.561125708797675 21.79966407882793 46-47 22.314593507872086 27.454716056358073 28.253750452029635 21.97693998374021 48-49 22.217619019268632 27.591909032619235 28.182202887104147 22.00826906100799 50-51 22.204904745423917 27.703185642308053 28.107419581922148 21.984490030345874 52-53 22.417700698030956 27.641008427330256 27.972360078577395 21.96893079606139 54-55 22.329100099416387 27.59485145510186 28.022086837657888 22.053961607823865 56-57 22.30030843779227 27.732029740528613 28.004310579837888 21.96335124184123 58-59 22.262069364592822 27.77191019425714 27.99885603450146 21.967164406648575 60-61 22.342488818661092 27.760721814927926 28.055167104319235 21.84162226209175 62-63 22.297950488503638 27.865456661901238 28.026716543575432 21.8098763060197 64-65 22.268057721296174 27.779410150198004 27.998527676001256 21.95400445250457 66-67 22.367663489373236 27.903652337268493 27.827486860795048 21.901197312563227 68-69 22.252818099227955 27.644411728519923 28.103940716520455 21.99882945573167 70-71 22.379571731345465 27.429645545567492 28.094119710589784 22.09666301249726 72-73 22.365810295454853 27.66478492767785 27.982196353474254 21.987208423393042 74-75 22.220501548487327 27.776260781026107 27.927002909856352 22.07623476063021 76-77 22.336246437385476 27.528695177831374 28.006764989282885 22.128293395500265 78-79 22.269769800709867 27.557684368281045 27.896957835786797 22.275587995222292 80-81 22.285999015196886 27.634290193302185 27.90255908053709 22.177151710963834 82-83 22.401087108217233 27.526382560383123 27.959759788937045 22.112770542462602 84-85 22.411276923767755 27.518959521421767 27.952184585909084 22.117578968901398 86-87 22.28015836569064 27.5925875352524 27.969875834281094 22.15737826477587 88-89 22.35368525797708 27.59117378827754 27.895503572854285 22.15963738089109 90-91 22.39567021107272 27.622787741249798 27.91435407435551 22.06718797332197 92-93 22.455191015013195 27.5487906800839 27.874485557211642 22.121532747691266 94-95 22.2980842372479 27.633654368342548 27.90297719302592 22.16528420138363 96-97 22.48574951345157 27.74423826329156 27.844901161409 21.925111061847872 98-99 23.506636381821682 29.651839643497762 28.09623503965372 18.74528893502683 100 22.451056823431134 30.576588023758976 22.043464765883876 24.928890386926017 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1205.0 1 1123.5 2 1162.0 3 1364.5 4 1649.0 5 2189.0 6 2792.0 7 3745.0 8 4919.0 9 5723.5 10 5891.0 11 5940.5 12 6649.5 13 8301.5 14 11670.0 15 15709.0 16 18570.5 17 19756.0 18 19341.0 19 17833.5 20 15896.5 21 14468.5 22 14628.0 23 16905.0 24 21234.5 25 27824.5 26 36215.5 27 45658.5 28 55297.0 29 66423.5 30 77344.5 31 87624.0 32 100341.0 33 113135.0 34 125524.0 35 137716.5 36 150116.0 37 160998.5 38 168790.0 39 176247.0 40 184198.5 41 190208.0 42 193111.0 43 197675.0 44 202411.5 45 205576.0 46 206842.5 47 206168.5 48 205985.5 49 204247.5 50 200543.5 51 194684.5 52 187063.5 53 176960.5 54 165145.5 55 153705.0 56 140882.0 57 126422.5 58 112110.0 59 96934.5 60 80529.5 61 64950.0 62 51293.0 63 39964.5 64 30302.5 65 22237.5 66 16179.5 67 12012.5 68 9039.5 69 6591.0 70 4649.5 71 3167.5 72 2059.0 73 1320.5 74 853.0 75 543.0 76 355.0 77 214.5 78 137.5 79 90.0 80 54.5 81 36.5 82 28.5 83 18.0 84 10.5 85 8.5 86 7.5 87 6.0 88 4.5 89 2.5 90 1.0 91 0.5 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.008780997839181832 3 4.074708974098298E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 2.6488560303958265E-4 26-27 3.566148488309656E-4 28-29 0.0025683473408483312 30-31 0.01207710373915904 32-33 0.007255169947246739 34-35 5.53060014488124E-4 36-37 1.2332936247044335E-4 38-39 6.199798423887244E-4 40-41 1.039528594572933E-5 42-43 0.0016315114300971606 44-45 7.373105691152821E-4 46-47 0.0013912495289930028 48-49 0.0026554862131010553 50-51 0.0017914310242398961 52-53 0.0 54-55 0.0013793956604869378 56-57 0.046565150006304665 58-59 0.06536803214087646 60-61 0.04402626777320923 62-63 0.012045856519158788 64-65 0.0 66-67 0.0 68-69 2.6645334952133976E-4 70-71 0.0014850323935845665 72-73 0.005640768263196831 74-75 0.008462459233501151 76-77 0.017735614699354314 78-79 0.012301543680115264 80-81 0.005715594933461663 82-83 0.03599570572342842 84-85 0.024678706067632127 86-87 0.007386899893034669 88-89 0.002147147717537509 90-91 0.0032987046359122143 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 36.0 20-21 146.0 22-23 289.0 24-25 427.0 26-27 1060.0 28-29 2582.0 30-31 8350.0 32-33 10386.0 34-35 14466.0 36-37 24303.0 38-39 29482.0 40-41 28314.0 42-43 32154.0 44-45 38329.0 46-47 38993.0 48-49 37024.0 50-51 34331.0 52-53 32158.0 54-55 34236.0 56-57 36052.0 58-59 36268.0 60-61 35596.0 62-63 34310.0 64-65 35392.0 66-67 37804.0 68-69 39660.0 70-71 40031.0 72-73 36234.0 74-75 36675.0 76-77 37739.0 78-79 40015.0 80-81 39761.0 82-83 37166.0 84-85 36244.0 86-87 37068.0 88-89 39584.0 90-91 40514.0 92-93 40174.0 94-95 46056.0 96-97 149436.0 98-99 330349.0 100-101 3299132.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.23816739231899 #Duplication Level Percentage of deduplicated Percentage of total 1 91.69553606446182 80.91046060384403 2 6.102250952415193 10.769028820182996 3 1.298203890300304 3.436533965450338 4 0.41742763256662935 1.4733219726637463 5 0.19509062259974513 0.8607219506814021 6 0.09640571836148915 0.5103998348614703 7 0.057010074180713646 0.3521325128024434 8 0.036130296162511226 0.25504568965773805 9 0.023454266117938088 0.1862605313800755 >10 0.07644088953270542 1.060983014895155 >50 0.0015419268511159155 0.0937959935186058 >100 4.742569946455089E-4 0.07303757762512132 >500 3.3409455226046764E-5 0.018277532436877027 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.074708974098298E-5 0.0 2.037354487049149E-5 0.0 3 0.0 4.074708974098298E-5 0.0 2.037354487049149E-5 0.0 4 0.0 1.0186772435245744E-4 0.0 4.074708974098298E-5 0.0 5 0.0 1.2224126922294893E-4 0.0 4.074708974098298E-5 0.0 6 0.0 1.2224126922294893E-4 0.0 6.112063461147447E-5 0.0 7 0.0 1.2224126922294893E-4 0.0 6.112063461147447E-5 0.0 8 0.0 1.2224126922294893E-4 0.0 6.112063461147447E-5 0.0 9 0.0 1.629883589639319E-4 0.0 6.112063461147447E-5 0.0 10-11 0.0 1.629883589639319E-4 0.0 8.149417948196595E-5 0.0 12-13 0.0 1.629883589639319E-4 0.0 1.1205449678770319E-4 0.0 14-15 0.0 2.546693108811436E-4 0.0 1.2224126922294893E-4 0.0 16-17 0.0 2.648560833163893E-4 0.0 1.2224126922294893E-4 0.0 18-19 0.0 3.259767179278638E-4 0.0 1.2224126922294893E-4 0.0 20-21 0.0 3.8709735253933825E-4 0.0 1.2224126922294893E-4 0.0 22-23 0.0 4.176576698450755E-4 0.0 1.2224126922294893E-4 0.0 24-25 0.0 4.685915320213042E-4 0.0 1.629883589639319E-4 0.0 26-27 0.0 5.093386217622872E-4 0.0 2.342957660106521E-4 0.0 28-29 0.0 5.093386217622872E-4 0.0 4.7877830445654994E-4 0.0 30-31 0.0 5.704592563737617E-4 0.0 0.0014159613684991584 0.0 32-33 0.0 5.704592563737617E-4 0.0 0.0034023819933720785 2.037354487049149E-5 34-35 0.0 6.010195736794988E-4 0.0 0.005949075102183514 2.037354487049149E-5 36-37 0.0 6.315798909852361E-4 0.0 0.009809861855141652 2.037354487049149E-5 38-39 0.0 7.232608429024478E-4 0.0 0.015962672406030082 2.037354487049149E-5 40-41 0.0 7.94568249949168E-4 0.0 0.021616331107591466 2.037354487049149E-5 42-43 0.0 8.149417948196595E-4 0.0 0.027830262293091372 2.037354487049149E-5 44-45 0.0 8.862492018663797E-4 0.0 0.035103617811856835 2.037354487049149E-5 46-47 0.0 9.473698364778542E-4 0.0 0.04216305110948213 2.037354487049149E-5 48-49 0.0 9.575566089130999E-4 0.0 0.04880482673726236 2.037354487049149E-5 50-51 0.0 0.001151105285182769 0.0 0.055507722999654056 2.037354487049149E-5 52-53 0.0 0.0011612920576180147 0.0 0.06196613672359986 2.037354487049149E-5 54-55 0.0 0.0011816656024885063 0.0 0.0683430562680637 2.037354487049149E-5 56-57 0.0 0.0012020391473589978 0.0 0.07387447370040212 2.037354487049149E-5 58-59 0.0 0.0012020391473589978 0.0 0.07925308954621188 2.037354487049149E-5 60-61 0.0 0.0012224126922294894 0.0 0.08436684930870525 2.037354487049149E-5 62-63 0.0 0.0012427862370999808 0.0 0.08914444558083551 2.037354487049149E-5 64-65 0.0 0.001426148140934404 0.0 0.09408503021192968 2.037354487049149E-5 66-67 0.0 0.0014465216858048956 0.0 0.09972850214105583 2.037354487049149E-5 68-69 0.0 0.0014465216858048956 0.0 0.10450609841318609 2.037354487049149E-5 70-71 0.0 0.0014770820031106328 0.0 0.10899846505712946 2.037354487049149E-5 72-73 4.074708974098298E-5 0.00150764232041637 0.0 0.11253327509215973 2.037354487049149E-5 74-75 4.074708974098298E-5 0.001548389410157353 0.0 0.11547725232594575 2.037354487049149E-5 76-77 4.074708974098298E-5 0.0016095100447688275 0.0 0.11867589887061292 2.037354487049149E-5 78-79 4.074708974098298E-5 0.001629883589639319 0.0 0.12043821050191042 2.037354487049149E-5 80-81 4.074708974098298E-5 0.001629883589639319 0.0 0.12111053748263664 2.037354487049149E-5 82-83 4.074708974098298E-5 0.0016400703620745648 0.0 0.12144670097299975 2.037354487049149E-5 84-85 4.074708974098298E-5 0.0016502571345098104 0.0 0.12175230414605713 2.037354487049149E-5 86-87 4.074708974098298E-5 0.0016502571345098104 0.0 0.12179305123579812 2.037354487049149E-5 88 4.074708974098298E-5 0.001711377769121285 0.0 0.12179305123579812 2.037354487049149E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6870 0.0 49.037052 1 GTATCAA 12775 0.0 38.094616 1 TCAACGC 15235 0.0 31.714237 4 ATCAACG 15520 0.0 31.353043 3 TATCAAC 15700 0.0 31.243382 2 CAACGCA 15660 0.0 30.88094 5 AACGCAG 16275 0.0 29.687643 6 ACGCAGA 18885 0.0 25.584667 7 CGCAGAG 19320 0.0 24.964193 8 GTGGTAT 3305 0.0 23.243046 1 TGGTATC 3240 0.0 22.914614 2 GCAGAGT 21905 0.0 21.979002 9 GAGTACT 12005 0.0 20.12355 12-13 CAGAGTA 21490 0.0 19.208656 10-11 GTACTTT 13150 0.0 18.27364 14-15 AGAGTAC 20065 0.0 18.081432 10-11 GTACATG 16230 0.0 17.610317 1 TACATGG 16420 0.0 17.589495 2 ACATGGG 16420 0.0 17.012424 3 AGTACTT 13075 0.0 16.606081 12-13 >>END_MODULE