##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139449_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5661958 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.74290978491893 30.0 18.0 33.0 18.0 34.0 2 30.825131341489993 32.0 30.0 33.0 27.0 34.0 3 32.14123753655537 33.0 31.0 33.0 29.0 34.0 4 32.48428511832832 33.0 33.0 33.0 31.0 34.0 5 32.93171832076465 33.0 33.0 34.0 32.0 34.0 6 36.249063663135615 38.0 36.0 38.0 33.0 38.0 7 37.083750356325496 38.0 38.0 38.0 36.0 38.0 8 36.62604473576102 38.0 37.0 38.0 34.0 38.0 9 37.177390047753796 38.0 38.0 38.0 36.0 38.0 10-11 37.32610803541813 38.0 38.0 38.0 36.5 38.0 12-13 37.40139020812235 38.0 38.0 38.0 37.0 38.0 14-15 37.389503595752565 38.0 38.0 38.0 36.5 38.0 16-17 37.46828729566698 38.0 38.0 38.0 37.0 38.0 18-19 37.494905207703766 38.0 38.0 38.0 37.0 38.0 20-21 37.527867619734735 38.0 38.0 38.0 37.0 38.0 22-23 37.53934172385341 38.0 38.0 38.0 37.5 38.0 24-25 37.55958392466718 38.0 38.0 38.0 38.0 38.0 26-27 37.53221669719086 38.0 38.0 38.0 37.5 38.0 28-29 37.513526265324366 38.0 38.0 38.0 37.0 38.0 30-31 37.512078864340765 38.0 38.0 38.0 37.5 38.0 32-33 37.430166041349004 38.0 38.0 38.0 37.0 38.0 34-35 37.466814400637574 38.0 38.0 38.0 37.0 38.0 36-37 37.45098811579854 38.0 38.0 38.0 37.0 38.0 38-39 37.43467649069468 38.0 38.0 38.0 37.0 38.0 40-41 37.43594853340721 38.0 38.0 38.0 37.0 38.0 42-43 37.40185748031606 38.0 38.0 38.0 37.0 38.0 44-45 37.360601985393686 38.0 38.0 38.0 37.0 38.0 46-47 37.33015942958608 38.0 38.0 38.0 37.0 38.0 48-49 37.21015812309089 38.0 38.0 38.0 37.0 38.0 50-51 37.19162737254292 38.0 38.0 38.0 37.0 38.0 52-53 37.192505653221296 38.0 38.0 38.0 37.0 38.0 54-55 37.16971669208845 38.0 38.0 38.0 37.0 38.0 56-57 37.11230168018997 38.0 38.0 38.0 36.0 38.0 58-59 37.090098359413346 38.0 38.0 38.0 36.0 38.0 60-61 37.10174508342898 38.0 38.0 38.0 36.0 38.0 62-63 37.10299267688745 38.0 38.0 38.0 36.0 38.0 64-65 37.107458934627324 38.0 38.0 38.0 36.0 38.0 66-67 37.046794445243705 38.0 38.0 38.0 36.0 38.0 68-69 37.061755226253624 38.0 38.0 38.0 36.0 38.0 70-71 37.078281775957635 38.0 38.0 38.0 36.0 38.0 72-73 37.090517941227105 38.0 38.0 38.0 36.0 38.0 74-75 37.07675370063343 38.0 38.0 38.0 36.0 38.0 76-77 37.042494176798 38.0 38.0 38.0 36.0 38.0 78-79 37.04207817073983 38.0 38.0 38.0 36.0 38.0 80-81 37.03957631913063 38.0 38.0 38.0 36.0 38.0 82-83 36.97607198825952 38.0 38.0 38.0 36.0 38.0 84-85 36.97457818510231 38.0 38.0 38.0 36.0 38.0 86-87 36.96865551732087 38.0 38.0 38.0 36.0 38.0 88-89 36.946349417091525 38.0 38.0 38.0 35.0 38.0 90-91 36.92068388182654 38.0 38.0 38.0 35.0 38.0 92-93 36.90782533474235 38.0 38.0 38.0 35.0 38.0 94-95 36.900156083391764 38.0 38.0 38.0 35.0 38.0 96-97 36.86932343296084 38.0 38.0 38.0 35.0 38.0 98-99 36.89595616979396 38.0 38.0 38.0 35.0 38.0 100 35.47837615778051 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 10.0 20 18.0 21 72.0 22 276.0 23 819.0 24 1910.0 25 3957.0 26 7325.0 27 12461.0 28 20380.0 29 30181.0 30 40578.0 31 51893.0 32 66377.0 33 89848.0 34 138351.0 35 268706.0 36 903934.0 37 4024860.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.09134472562318 18.764409767787043 13.500947905300603 22.643297601289163 2 14.688518602123303 20.111001247359823 43.26453954900754 21.935940601509337 3 18.730555530534758 26.049403059754784 29.934049304860494 25.285992104849964 4 12.759543606646323 18.08427402675894 38.59126118561812 30.56492118097662 5 13.881205053092941 37.26306341375192 35.21582109934408 13.639910433811059 6 30.242612184689467 37.34494321575681 18.729651473924743 13.682793125628978 7 27.193596278884442 32.52111725307747 22.532046334501246 17.753240133536842 8 24.46904410099828 36.86539179555906 20.83987553422332 17.82568856921934 9 25.64780593568515 17.723709713141638 21.40854806764727 35.219936283525946 10-11 24.636971874393982 26.960240609343977 28.24084000623106 20.16194751003098 12-13 25.47232777071112 24.281061427866472 28.683778650424465 21.56283215099794 14-15 22.563660839589414 25.62173721528842 26.554833151358594 25.25976879376357 16-17 21.93823232175159 28.886738474570105 27.241856968914284 21.93317223476402 18-19 21.929878321245052 27.812163212796705 29.199766229279696 21.05819223667855 20-21 22.762637134973108 26.86305793935228 29.18386239800124 21.19044252767338 22-23 22.519515560519963 26.82520564727227 29.05054298792787 21.604735804279894 24-25 22.23666267456608 27.008256229266692 29.125747635651933 21.629333460515298 26-27 22.157028494505408 27.127769047789403 29.096477118450192 21.618725339255004 28-29 22.059473508510038 27.091369472018727 29.148140876298235 21.701016143173 30-31 22.41989240196824 26.98847411638903 29.051353573897927 21.540279907744807 32-33 22.163055881693484 27.207442014853566 28.99155808364536 21.63794401980759 34-35 22.286475571042747 27.201838973520744 29.059812873383677 21.45187258205283 36-37 22.251916491898918 27.076845866677623 28.9891272655995 21.68211037582396 38-39 22.054289206874238 27.134581505716543 29.17594556698066 21.63518372042856 40-41 22.31308758103286 27.028718458653778 29.017739777963985 21.640454182349377 42-43 22.25778851697488 27.051778506248453 28.901636213710752 21.788796763065918 44-45 22.212976050975588 27.219133982631604 28.77891953890423 21.78897042748857 46-47 22.377630041386702 27.194060940115865 28.43245790512802 21.995851113369405 48-49 22.311863729653766 27.32189119322831 28.32998303044626 22.036262046671666 50-51 22.23757510002137 27.464551729933877 28.31879110851332 21.979082061531432 52-53 22.410181757398437 27.413371236905533 28.263129483327216 21.913317522368814 54-55 22.397253167245832 27.329787732240735 28.23877312598872 22.034185974524714 56-57 22.367742944911377 27.49757717842239 28.123616232046118 22.011063644620112 58-59 22.268161925708842 27.519461565793453 28.29171842224526 21.920658086252445 60-61 22.386329056463786 27.6320664176866 28.192039465971234 21.78956505987838 62-63 22.272229690906087 27.72947903414292 28.17118695016292 21.82710432478808 64-65 22.263496454456106 27.635991429855594 28.199476514685966 21.901035601002334 66-67 22.348945921377954 27.692291761376964 27.98927008083276 21.969492236412325 68-69 22.244809140992373 27.690955960159386 28.19687375795601 21.86736114089224 70-71 22.423455873299147 27.41937240646952 28.22216549155698 21.93500622867435 72-73 22.532269811510165 27.29627804775862 28.159365889851244 22.01208625087997 74-75 22.353357300710357 27.36130534846517 28.169807079493403 22.115530271331075 76-77 22.362282945321283 27.43232156979482 27.99029364422662 22.215101840657276 78-79 22.40285491566924 27.414647132600617 27.9534742949567 22.229023656773446 80-81 22.375442121672453 27.45610428786287 27.96048672653917 22.207966863925506 82-83 22.433558385030963 27.41038150164804 28.008158722796427 22.14790139052457 84-85 22.472251898589573 27.487384891708338 27.91823102719762 22.122132182504465 86-87 22.336638197719967 27.484894613385013 28.017323888929933 22.16114329996509 88-89 22.414010130244698 27.52747598559181 27.90954930170999 22.148964582453498 90-91 22.466175988766405 27.54744968160447 27.886148211542828 22.1002261180863 92-93 22.564431892284738 27.527096216503754 27.857523654871603 22.050948236339902 94-95 22.379961395402525 27.627320932052935 27.888965397259813 22.103752275284723 96-97 22.534768924549407 27.684379788029883 27.95877153878673 21.82207974863398 98-99 23.529890152850047 29.569985289984206 28.196159831111743 18.703964726054004 100 29.979671453852884 40.526320021461565 29.49400852468555 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 849.0 1 823.5 2 1127.0 3 1527.0 4 1961.0 5 2854.5 6 3677.5 7 4676.5 8 6167.0 9 7119.0 10 7151.0 11 6987.0 12 7508.0 13 9361.5 14 13082.5 15 17411.0 16 21005.0 17 23644.5 18 24070.0 19 22344.0 20 19990.0 21 18088.0 22 17682.5 23 19686.0 24 24237.5 25 31171.0 26 40703.5 27 51599.5 28 63043.0 29 76099.0 30 88715.5 31 100940.5 32 115643.0 33 131599.0 34 146077.0 35 160466.5 36 175959.5 37 188941.5 38 199680.5 39 208467.5 40 217020.0 41 224840.0 42 230498.5 43 236523.5 44 244247.0 45 252094.0 46 252307.0 47 249106.5 48 247583.5 49 243730.5 50 238459.0 51 231445.5 52 220418.0 53 206905.5 54 192265.5 55 176972.0 56 160823.5 57 144427.5 58 128177.5 59 110261.5 60 92225.5 61 74957.5 62 58973.5 63 45415.5 64 34273.5 65 25592.5 66 18916.0 67 14277.5 68 10890.5 69 7947.5 70 5733.0 71 4025.0 72 2662.0 73 1743.5 74 1140.5 75 764.5 76 529.0 77 339.0 78 202.5 79 130.0 80 85.5 81 49.5 82 36.0 83 31.5 84 25.0 85 15.5 86 8.5 87 5.5 88 3.5 89 1.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.007064693874451205 3 1.7661734686128014E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 4.3277009336087396E-4 26-27 4.0631821287823806E-4 28-29 0.0030218826717825433 30-31 0.013771627846213816 32-33 0.008519298116215638 34-35 6.490494492993244E-4 36-37 1.0716001231268541E-4 38-39 8.269148561725419E-4 40-41 9.05293859744814E-6 42-43 0.0018147600545230522 44-45 6.713852480290244E-4 46-47 0.0014673944943358573 48-49 0.003497884576936018 50-51 0.0023186514117700613 52-53 0.0 54-55 0.0017404920572981523 56-57 0.05114141828580558 58-59 0.07048469525493041 60-61 0.048056984447918734 62-63 0.01409623976080026 64-65 0.0 66-67 0.0 68-69 2.4622804287076453E-4 70-71 0.001804929261814014 72-73 0.006094259417413974 74-75 0.010443764669993983 76-77 0.019021317890619293 78-79 0.013330764485286532 80-81 0.006842395262439196 82-83 0.039546554935954804 84-85 0.028266913343490224 86-87 0.008617209673065998 88-89 0.002838960156163331 90-91 0.0033212549592506234 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 31.0 20-21 184.0 22-23 458.0 24-25 504.0 26-27 1338.0 28-29 3669.0 30-31 12197.0 32-33 15281.0 34-35 21366.0 36-37 34334.0 38-39 39720.0 40-41 39471.0 42-43 44212.0 44-45 52090.0 46-47 52593.0 48-49 49764.0 50-51 44183.0 52-53 40226.0 54-55 42757.0 56-57 44135.0 58-59 46641.0 60-61 46611.0 62-63 44900.0 64-65 47580.0 66-67 51066.0 68-69 52454.0 70-71 55456.0 72-73 46856.0 74-75 46287.0 76-77 48376.0 78-79 50049.0 80-81 50218.0 82-83 46802.0 84-85 45479.0 86-87 47122.0 88-89 49317.0 90-91 50046.0 92-93 48882.0 94-95 56490.0 96-97 171424.0 98-99 1285335.0 100-101 2736054.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.36873041761329 #Duplication Level Percentage of deduplicated Percentage of total 1 91.81643796753345 81.13702054658476 2 6.033299655777288 10.663100616201245 3 1.2560578426967 3.329887106705808 4 0.4084857480973079 1.4438946781219237 5 0.1841526175206458 0.8136666506689899 6 0.10234202336890541 0.5426300804087929 7 0.054544844901515926 0.3374041086340813 8 0.03682066666205252 0.2603036452844576 9 0.02181675023667508 0.1735126668227827 >10 0.08452526576209811 1.130803618476587 >50 0.0010755464674267708 0.06677976966865731 >100 3.8377514321855685E-4 0.06368102695029743 >500 5.729583276386071E-5 0.037315485471605285 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.532346937225603E-5 0.0 0.0 0.0 3 0.0 3.532346937225603E-5 0.0 0.0 0.0 4 0.0 7.064693874451206E-5 0.0 0.0 0.0 5 0.0 8.830867343064008E-5 0.0 0.0 0.0 6 3.532346937225603E-5 8.830867343064008E-5 0.0 0.0 3.532346937225603E-5 7 3.532346937225603E-5 1.0597040811676809E-4 0.0 0.0 3.532346937225603E-5 8 5.298520405838404E-5 1.0597040811676809E-4 0.0 1.7661734686128014E-5 3.532346937225603E-5 9 5.298520405838404E-5 1.7661734686128016E-4 0.0 1.7661734686128014E-5 5.298520405838404E-5 10-11 5.298520405838404E-5 1.8544821420434415E-4 0.0 4.415433671532004E-5 5.298520405838404E-5 12-13 5.298520405838404E-5 1.9427908154740815E-4 0.0 5.298520405838404E-5 5.298520405838404E-5 14-15 5.298520405838404E-5 3.002494896641762E-4 0.0 7.947780608757607E-5 5.298520405838404E-5 16-17 8.830867343064008E-5 3.002494896641762E-4 0.0 8.830867343064008E-5 5.298520405838404E-5 18-19 8.830867343064008E-5 3.4440382637949626E-4 0.0 8.830867343064008E-5 5.298520405838404E-5 20-21 8.830867343064008E-5 4.0621989778094435E-4 0.0 8.830867343064008E-5 7.064693874451206E-5 22-23 8.830867343064008E-5 4.3271249981013634E-4 0.0 8.830867343064008E-5 1.0597040811676809E-4 24-25 8.830867343064008E-5 5.210211732407764E-4 0.0 1.148012754598321E-4 1.5895561217515214E-4 26-27 8.830867343064008E-5 6.004989793283524E-4 0.0 2.2077168357660017E-4 1.5895561217515214E-4 28-29 8.830867343064008E-5 6.004989793283524E-4 0.0 4.4154336715320034E-4 1.7661734686128016E-4 30-31 8.830867343064008E-5 6.004989793283524E-4 0.0 0.0015718943870653933 2.1194081623353617E-4 32-33 8.830867343064008E-5 6.004989793283524E-4 0.0 0.004397771936845875 2.296025509196642E-4 34-35 8.830867343064008E-5 6.888076527589925E-4 0.0 0.008080243618903566 2.296025509196642E-4 36-37 8.830867343064008E-5 7.682854588465687E-4 0.0 0.014358990299822075 2.296025509196642E-4 38-39 8.830867343064008E-5 7.771163261896326E-4 0.0 0.03165865942488447 2.296025509196642E-4 40-41 8.830867343064008E-5 8.389323975910806E-4 0.0 0.050088679569859046 2.472642856057922E-4 42-43 8.830867343064008E-5 8.919176016494647E-4 0.0 0.060570919106076024 2.560951529488562E-4 44-45 8.830867343064008E-5 9.802262750801048E-4 0.0 0.07318139767197143 2.6492602029192023E-4 46-47 8.830867343064008E-5 0.0010420423464815528 0.0 0.08584486144192521 2.7375688763498423E-4 48-49 8.830867343064008E-5 0.0010420423464815528 0.0 0.09854364868125126 3.002494896641762E-4 50-51 1.0597040811676809E-4 0.0011480127545983208 0.0 0.11143671500212471 3.002494896641762E-4 52-53 1.0597040811676809E-4 0.001165674489284449 0.0 0.1543017450853574 3.090803570072403E-4 54-55 1.0597040811676809E-4 0.001165674489284449 0.0 0.20605062771571248 3.1791122435030427E-4 56-57 1.0597040811676809E-4 0.001183336223970577 0.0 0.2768830146744289 3.1791122435030427E-4 58-59 1.0597040811676809E-4 0.001209828825999769 0.0 0.3210020279203767 3.1791122435030427E-4 60-61 1.236321428028961E-4 0.001253983162715089 0.0 0.3359615171995271 3.1791122435030427E-4 62-63 1.236321428028961E-4 0.001253983162715089 0.0 0.34841304015324737 3.708964284086883E-4 64-65 1.236321428028961E-4 0.0013952770402041131 0.0 0.3554159179562971 3.708964284086883E-4 66-67 1.236321428028961E-4 0.0013952770402041131 0.0 0.3619772523921937 3.797272957517523E-4 68-69 1.236321428028961E-4 0.0014129387748902413 0.0 0.36889182152181277 3.885581630948163E-4 70-71 1.501247448320881E-4 0.0014394313769194333 0.0 0.3745965618254321 4.0621989778094435E-4 72-73 1.7661734686128016E-4 0.0014482622442624972 0.0 0.3790384880989933 4.945285712115844E-4 74-75 1.8544821420434415E-4 0.0014659239789486251 0.0 0.38249135723013133 5.121903058977124E-4 76-77 1.9427908154740815E-4 0.0014659239789486251 0.0 0.38611201284078756 5.298520405838405E-4 78-79 1.9427908154740815E-4 0.0014659239789486251 0.0 0.3885051778907579 5.475137752699685E-4 80-81 1.9427908154740815E-4 0.0014659239789486251 0.0 0.38937060289037817 5.475137752699685E-4 82-83 1.9427908154740815E-4 0.0014659239789486251 0.0 0.3900859031451664 5.828372446422245E-4 84-85 1.9427908154740815E-4 0.0014659239789486251 0.0 0.3903331674307722 5.828372446422245E-4 86-87 1.9427908154740815E-4 0.0015012474483208813 0.0 0.390447968706232 6.004989793283524E-4 88 1.9427908154740815E-4 0.0015542326523792652 0.0 0.390447968706232 6.181607140144805E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8500 0.0 49.96424 1 GTATCAA 15490 0.0 37.357616 1 TCAACGC 18250 0.0 30.824692 4 ATCAACG 18505 0.0 30.628496 3 TATCAAC 18695 0.0 30.613771 2 CAACGCA 18685 0.0 30.061798 5 AACGCAG 19255 0.0 29.259754 6 TGGTATC 3980 0.0 26.676888 2 ACGCAGA 21850 0.0 25.746025 7 CGCAGAG 22290 0.0 25.237803 8 GTGGTAT 4425 0.0 25.045662 1 GCAGAGT 25735 0.0 21.727875 9 GAGTACT 14150 0.0 20.999062 12-13 GTACATG 19755 0.0 20.920017 1 TACATGG 19860 0.0 20.021338 2 ACATGGG 19650 0.0 19.674044 3 CAGAGTA 25265 0.0 19.428345 10-11 GTACTTT 15565 0.0 18.981861 14-15 AGAGTAC 23520 0.0 18.082344 10-11 CATGGGG 14060 0.0 17.53853 4 >>END_MODULE