##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139445_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7832614 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.6357254423619 28.0 18.0 33.0 18.0 33.0 2 30.021778680782685 31.0 27.0 33.0 27.0 34.0 3 31.876327238901343 33.0 31.0 33.0 29.0 34.0 4 31.7218167523639 33.0 31.0 33.0 29.0 34.0 5 32.44040010142208 33.0 33.0 33.0 32.0 34.0 6 35.83202108517029 38.0 36.0 38.0 31.0 38.0 7 36.888549595320285 38.0 37.0 38.0 35.0 38.0 8 36.41259201589661 38.0 37.0 38.0 34.0 38.0 9 37.07275476616108 38.0 38.0 38.0 36.0 38.0 10-11 37.22758838875502 38.0 38.0 38.0 36.0 38.0 12-13 37.233308382105896 38.0 38.0 38.0 36.0 38.0 14-15 37.218540068488 38.0 38.0 38.0 36.0 38.0 16-17 37.27225004321674 38.0 38.0 38.0 36.0 38.0 18-19 37.297731063984514 38.0 38.0 38.0 36.5 38.0 20-21 37.33332472265934 38.0 38.0 38.0 37.0 38.0 22-23 37.34748967127601 38.0 38.0 38.0 37.0 38.0 24-25 37.35693869509247 38.0 38.0 38.0 37.0 38.0 26-27 37.33539062443529 38.0 38.0 38.0 37.0 38.0 28-29 37.317258855140594 38.0 38.0 38.0 37.0 38.0 30-31 37.326699002954484 38.0 38.0 38.0 37.0 38.0 32-33 37.316361112555086 38.0 38.0 38.0 37.0 38.0 34-35 37.29310257844067 38.0 38.0 38.0 37.0 38.0 36-37 37.27761938150397 38.0 38.0 38.0 37.0 38.0 38-39 37.26014187971937 38.0 38.0 38.0 37.0 38.0 40-41 37.26387087436592 38.0 38.0 38.0 37.0 38.0 42-43 37.226571674534284 38.0 38.0 38.0 36.0 38.0 44-45 37.18402667749221 38.0 38.0 38.0 36.0 38.0 46-47 37.14823506006769 38.0 38.0 38.0 36.0 38.0 48-49 37.086646512789635 38.0 38.0 38.0 36.0 38.0 50-51 37.02143703935147 38.0 38.0 38.0 36.0 38.0 52-53 36.99207867877013 38.0 38.0 38.0 36.0 38.0 54-55 36.95317458149232 38.0 38.0 38.0 36.0 38.0 56-57 36.88152461218006 38.0 38.0 38.0 35.0 38.0 58-59 36.84214595563424 38.0 38.0 38.0 35.0 38.0 60-61 36.8615017235723 38.0 38.0 38.0 35.0 38.0 62-63 36.86330062312608 38.0 38.0 38.0 35.0 38.0 64-65 36.8617751174165 38.0 38.0 38.0 35.0 38.0 66-67 36.85034850383339 38.0 38.0 38.0 35.0 38.0 68-69 36.826431123072425 38.0 38.0 38.0 35.0 38.0 70-71 36.81227235130107 38.0 38.0 38.0 35.0 38.0 72-73 36.799577230942774 38.0 38.0 38.0 35.0 38.0 74-75 36.769543091715974 38.0 38.0 38.0 35.0 38.0 76-77 36.74215925751144 38.0 38.0 38.0 34.5 38.0 78-79 36.74141426350482 38.0 38.0 38.0 34.0 38.0 80-81 36.73308629385626 38.0 38.0 38.0 34.0 38.0 82-83 36.6685567555501 38.0 38.0 38.0 34.0 38.0 84-85 36.637507320310476 38.0 38.0 38.0 34.0 38.0 86-87 36.63562181571638 38.0 38.0 38.0 34.0 38.0 88-89 36.61391104865119 38.0 38.0 38.0 34.0 38.0 90-91 36.57432404505239 38.0 38.0 38.0 34.0 38.0 92-93 36.55681655964973 38.0 38.0 38.0 34.0 38.0 94-95 36.52889302601018 38.0 38.0 38.0 34.0 38.0 96-97 36.49488969393579 38.0 37.0 38.0 34.0 38.0 98-99 36.48855941515009 38.0 37.0 38.0 34.0 38.0 100 34.940060155963934 38.0 34.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 11.0 20 26.0 21 141.0 22 554.0 23 1590.0 24 3559.0 25 7185.0 26 12939.0 27 21709.0 28 34392.0 29 51198.0 30 69666.0 31 93397.0 32 123769.0 33 173049.0 34 270356.0 35 513876.0 36 1555559.0 37 4899636.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.89464921927724 16.510260814588847 13.40113275082878 22.193957215305133 2 14.964615765477005 19.955089363561278 42.78689292727697 22.29340194368475 3 18.541314472650892 26.74905383999309 29.663506267324564 25.046125420031462 4 13.241288285111457 18.341871564205768 37.37080622126917 31.046033929413603 5 14.46838097793954 37.342783906924524 34.329969916800415 13.858865198335524 6 30.74690987225834 36.6747078398566 18.698593890538334 13.879788397346731 7 28.13991599739244 32.398481528644204 22.10482988182489 17.356772592138462 8 25.7078160624282 36.03914350943376 20.392898207418366 17.860142220719673 9 26.87017386532772 17.479975395187353 20.764064206406697 34.885786533078225 10-11 25.51933492445817 26.45322493869863 27.570450937579714 20.45698919926349 12-13 26.51766064304969 23.964119768955804 27.88972493729424 21.628494650700265 14-15 23.609538271642137 24.878469690961406 25.718872396877977 25.79311964051848 16-17 22.926656413810257 28.208009484445423 26.259190099244005 22.606144002500315 18-19 22.993428502923802 27.25526880298199 28.092907425286118 21.65839526880809 20-21 23.961785078089267 26.19589360670561 27.95049627882645 21.891825036378673 22-23 23.903555348465108 26.12461316570498 27.879513194451228 22.092318291378685 24-25 23.40937635283985 26.40113908436958 27.881334610247098 22.30814995254347 26-27 23.184881845281268 26.47687652086147 28.05076382745284 22.287477806404425 28-29 23.14948343388922 26.29313328941012 28.106140981252075 22.45124229544858 30-31 23.376408812441305 26.309818005930335 27.84649746068312 22.46727572094524 32-33 23.212917026037356 26.558388462445276 27.901972318518524 22.326722192998847 34-35 23.40544791106111 26.507321885224293 27.90255616566812 22.184674038046477 36-37 23.325692254588667 26.37373134528057 27.819433907477766 22.481142492652996 38-39 23.195631097738534 26.52968040366634 28.004530083356403 22.270158415238726 40-41 23.367748687409843 26.315364506454337 27.884368154941715 22.432518651194115 42-43 23.24950932190288 26.465540310941982 27.751577324406824 22.533373042748313 44-45 23.20785184899401 26.537471720266954 27.716696180581046 22.537980250157993 46-47 23.452166474597195 26.552378697646915 27.323312898415864 22.67214192934002 48-49 23.379815744105354 26.651797770347713 27.17038781429097 22.797998671255964 50-51 23.30107562461389 26.81219891706344 27.164506766651886 22.722218691670786 52-53 23.513293449782786 26.67397671286959 27.18858704331413 22.624142794033496 54-55 23.446871396996396 26.623753623846014 27.10243887638496 22.826936102772628 56-57 23.42434966310832 26.851757815310634 27.08699019128364 22.636902330297406 58-59 23.355760472079485 26.899763742367526 27.189730485048084 22.5547453005049 60-61 23.53296793312123 27.04809727653149 26.99562754574163 22.42330724460565 62-63 23.432588162203118 27.18883331378934 27.008265136071298 22.370313387936243 64-65 23.523491482016247 27.08036314799282 26.92334844437689 22.472796925614034 66-67 23.661971548530946 27.094917229804622 26.781611722771327 22.461499498893108 68-69 23.385767612648568 27.08731490546627 27.03554016016339 22.491377321721775 70-71 23.62553335027204 26.768883009015482 27.10501414966225 22.50056949105023 72-73 23.81075093457303 26.81633455022415 26.823363300541843 22.549551214660983 74-75 23.356738996156576 26.85502947705843 27.083292722613585 22.704938804171416 76-77 23.44208898891491 26.73861914798416 27.095989577183715 22.72330228591721 78-79 23.307068863502202 26.62346412997394 27.047371567090977 23.02209543943288 80-81 23.35112934397341 26.829199450301232 27.00727174428696 22.8123994614384 82-83 23.39412004903114 26.699603910901782 27.080904858649156 22.825371181417925 84-85 23.30340547497722 26.748923762917087 27.02351092106243 22.924159841043263 86-87 23.22041664065906 26.805758882774665 27.155403425384645 22.818421051181627 88-89 23.345495777687695 26.729321811474932 27.0189364911556 22.906245919681776 90-91 23.356687987082804 26.74818231501272 27.037458933159076 22.8576707647454 92-93 23.419605347739417 26.738072125654995 26.99653916329565 22.845783363309938 94-95 23.28457702835809 26.710359349735747 27.079429269901222 22.925634352004938 96-97 23.44535263089167 26.76904985975282 27.007767754205624 22.777829755149888 98-99 24.44904447093674 28.808614211914307 27.163948195513164 19.578393121635777 100 31.737466665319157 39.69796077657011 28.56457255811073 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 919.0 1 888.5 2 1289.0 3 1897.5 4 2440.0 5 3607.5 6 4668.5 7 5774.0 8 7361.0 9 8414.5 10 8680.0 11 8675.0 12 9434.5 13 11482.0 14 15673.5 15 21018.0 16 25537.5 17 28787.5 18 29082.5 19 26416.5 20 22833.0 21 19600.5 22 18169.5 23 19757.5 24 24225.5 25 31381.0 26 40467.0 27 50847.0 28 63190.5 29 79290.0 30 95495.0 31 111280.0 32 131629.0 33 153805.0 34 170586.5 35 187299.0 36 208132.5 37 225533.5 38 241726.5 39 253545.0 40 262277.0 41 272006.5 42 279529.0 43 288838.5 44 303839.5 45 319758.0 46 325139.0 47 326209.0 48 329875.5 49 332832.0 50 334894.5 51 335901.0 52 332775.5 53 322897.0 54 308256.5 55 293507.5 56 272330.0 57 247045.5 58 222841.0 59 192402.5 60 161967.5 61 134263.5 62 108545.0 63 85047.5 64 63931.5 65 47519.5 66 35338.5 67 26737.5 68 20083.5 69 14579.0 70 10267.0 71 6785.5 72 4248.5 73 2601.0 74 1600.0 75 969.0 76 616.5 77 402.0 78 264.5 79 160.0 80 108.0 81 78.0 82 53.5 83 37.0 84 24.5 85 15.5 86 8.5 87 5.0 88 2.5 89 1.5 90 1.5 91 2.0 92 1.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.002183179204286079 3 0.002106576425188322 4 0.0 5 3.830138954887857E-5 6 1.1490416864663573E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 2.2344451336466325E-4 26-27 0.0017302532611922004 28-29 0.0064501139882025505 30-31 0.002281632582889251 32-33 0.0051210301054477715 34-35 0.0024564961270420265 36-37 0.0010292064342384045 38-39 3.2318945068264726E-5 40-41 3.900663873487949E-5 42-43 0.0019291916052829507 44-45 4.542776162934238E-4 46-47 2.9858706609742257E-4 48-49 0.0015983730034130948 50-51 4.6499729492877995E-4 52-53 0.0 54-55 0.004626117776311967 56-57 0.04380629263456894 58-59 0.06489453320768657 60-61 0.03177659918391598 62-63 0.013077731329283747 64-65 0.0013564954577643066 66-67 0.0 68-69 0.002175908857611705 70-71 0.0034825355224098967 72-73 0.012263775748859113 74-75 0.015101186878898597 76-77 0.020045055220337258 78-79 0.005923339115027382 80-81 0.007778584020830391 82-83 0.03135124563851574 84-85 0.018018192214737556 86-87 0.013497207534007453 88-89 0.0057692321446039755 90-91 5.620916554683288E-5 92-93 0.0 94-95 0.0 96-97 8.33861515114699E-6 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 41.0 20-21 156.0 22-23 396.0 24-25 565.0 26-27 1364.0 28-29 3917.0 30-31 11874.0 32-33 14403.0 34-35 19294.0 36-37 34136.0 38-39 44593.0 40-41 44498.0 42-43 48908.0 44-45 57774.0 46-47 59662.0 48-49 58013.0 50-51 53578.0 52-53 49620.0 54-55 51502.0 56-57 54227.0 58-59 56391.0 60-61 57906.0 62-63 55475.0 64-65 58036.0 66-67 63183.0 68-69 65617.0 70-71 72108.0 72-73 59690.0 74-75 58281.0 76-77 60445.0 78-79 63535.0 80-81 64279.0 82-83 61333.0 84-85 59610.0 86-87 60433.0 88-89 64321.0 90-91 66619.0 92-93 66497.0 94-95 78683.0 96-97 252923.0 98-99 1919759.0 100-101 3858969.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.52429823285141 #Duplication Level Percentage of deduplicated Percentage of total 1 88.38716516180331 72.94088777768951 2 7.915216988795228 13.06395454722139 3 1.977152287949948 4.89489315187638 4 0.7777010782346858 2.5671694286499727 5 0.3540713521912341 1.4609744931969184 6 0.18046966294977512 0.8935879372349649 7 0.11356856748761257 0.6560516433257816 8 0.0677018573493371 0.4469638613451727 9 0.05270653252305553 0.39146126478769055 >10 0.1675871163696479 2.174240391667661 >50 0.004812947867763764 0.26345096955787684 >100 0.0018464464784489869 0.24636453344670686 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 2.553425969925238E-5 0.0 0.0 0.0 4 0.0 7.660277909775714E-5 0.0 0.0 0.0 5 0.0 7.660277909775714E-5 0.0 0.0 0.0 6 8.936990894738333E-5 7.660277909775714E-5 0.0 0.0 0.0 7 8.936990894738333E-5 7.660277909775714E-5 0.0 0.0 0.0 8 8.936990894738333E-5 1.276712984962619E-4 0.0 0.0 0.0 9 8.936990894738333E-5 3.064111163910286E-4 0.0 0.0 0.0 10-11 1.0213703879700952E-4 3.064111163910286E-4 0.0 1.276712984962619E-5 0.0 12-13 1.0213703879700952E-4 3.064111163910286E-4 0.0 1.276712984962619E-5 0.0 14-15 1.0213703879700952E-4 3.8301389548878574E-4 0.0 1.276712984962619E-5 0.0 16-17 1.468219932707012E-4 3.957810253384119E-4 0.0 1.276712984962619E-5 0.0 18-19 1.532055581955143E-4 4.149317201128512E-4 0.0 1.276712984962619E-5 0.0 20-21 1.532055581955143E-4 4.340824148872905E-4 0.0 1.276712984962619E-5 0.0 22-23 1.532055581955143E-4 4.723838044361691E-4 0.0 1.276712984962619E-5 0.0 24-25 1.9789051266920596E-4 5.106851939850476E-4 0.0 2.553425969925238E-5 0.0 26-27 2.0427407759401905E-4 5.234523238346738E-4 0.0 7.660277909775714E-5 0.0 28-29 2.0427407759401905E-4 5.234523238346738E-4 0.0 2.3619190221808455E-4 0.0 30-31 2.1704120744364525E-4 6.383564924813096E-4 0.0 8.553976999249547E-4 0.0 32-33 2.2342477236845834E-4 6.63890752180562E-4 0.0 0.002183179204286079 0.0 34-35 2.3619190221808455E-4 7.787949208271977E-4 0.0 0.0036641662668427167 0.0 36-37 2.489590320677107E-4 8.936990894738334E-4 0.0 0.005898413990527301 0.0 38-39 2.553425969925238E-4 9.32000479022712E-4 0.0 0.009990279107332495 0.0 40-41 2.553425969925238E-4 0.0010341375178197214 0.0 0.01478433636586713 0.0 42-43 2.553425969925238E-4 0.0010724389073686002 0.0 0.019284749637860362 0.0 44-45 2.617261619173369E-4 0.0011937266409400489 0.0 0.024117108285943878 0.0 46-47 2.6810972684215E-4 0.0012767129849626192 0.0 0.029032453278049958 0.0 48-49 2.6810972684215E-4 0.0012830965498874323 0.0 0.03386481192613347 0.0 50-51 2.6810972684215E-4 0.0015575898416543953 0.0 0.03938021202117199 0.0 52-53 2.6810972684215E-4 0.0015703569715040215 0.0 0.04480624220726312 0.0 54-55 2.6810972684215E-4 0.0015767405364288346 0.0 0.0499641626665121 0.0 56-57 2.808768566917762E-4 0.0015831241013536477 0.0 0.05509654886606183 0.0 58-59 2.808768566917762E-4 0.0015831241013536477 0.0 0.06057364757155147 0.0 60-61 2.936439865414024E-4 0.001602274796128087 0.0 0.06626778748448475 0.0 62-63 2.936439865414024E-4 0.0016916447050754704 0.0 0.07168743410565107 0.0 64-65 2.936439865414024E-4 0.0018256995684965453 0.0 0.07753477957677986 0.0 66-67 2.936439865414024E-4 0.0018320831334213584 0.0 0.08283952202929953 0.0 68-69 2.936439865414024E-4 0.0018895352177446764 0.0 0.08795914109899965 0.0 70-71 2.936439865414024E-4 0.001927836607293555 0.0 0.09212122542997778 0.0 72-73 3.064111163910286E-4 0.0019597544319176203 0.0 0.09556196692445204 0.0 74-75 3.064111163910286E-4 0.001991672256541686 0.0 0.09832605053689611 0.0 76-77 3.064111163910286E-4 0.002068275035639443 0.0 0.10090501076652061 0.0 78-79 3.191782462406548E-4 0.0021065764251883214 0.0 0.10278177885441565 0.0 80-81 3.191782462406548E-4 0.0021065764251883214 0.0 0.10364994368419023 0.0 82-83 3.255618111654679E-4 0.0021065764251883214 0.0 0.10432660156622042 0.0 84-85 3.31945376090281E-4 0.0021193435550379476 0.0 0.10463939624753626 0.0 86-87 3.31945376090281E-4 0.0021704120744364527 0.0 0.10473514972140846 0.0 88 3.31945376090281E-4 0.002272549113233462 0.0 0.10474153328633327 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11350 0.0 54.78347 1 GTATCAA 22095 0.0 41.299213 1 TCAACGC 27400 0.0 32.58077 4 TATCAAC 27685 0.0 32.479473 2 ATCAACG 27850 0.0 32.070156 3 CAACGCA 28430 0.0 31.385288 5 AACGCAG 29005 0.0 30.792707 6 ACGCAGA 33125 0.0 27.00168 7 CGCAGAG 34705 0.0 25.78476 8 GTGGTAT 5260 0.0 24.246416 1 GTACATG 35855 0.0 23.210306 1 CTTATAC 5040 0.0 22.919155 1 GCAGAGT 39400 0.0 22.832067 9 TGGTATC 5250 0.0 22.329561 2 TACATGG 36830 0.0 22.05953 2 ACATGGG 36815 0.0 21.414644 3 TATACAC 6820 0.0 20.65154 3 GAGTACT 17660 0.0 20.521503 12-13 CAGAGTA 38485 0.0 19.642736 10-11 CATGGGG 27525 0.0 19.640648 4 >>END_MODULE