##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139444_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4297674 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.608844225969676 27.0 18.0 33.0 18.0 33.0 2 30.04090584814018 31.0 27.0 33.0 27.0 34.0 3 31.88420038374246 33.0 31.0 33.0 29.0 34.0 4 31.744955061738047 33.0 31.0 33.0 29.0 34.0 5 32.45726990925789 33.0 33.0 33.0 32.0 34.0 6 35.82577342999958 38.0 36.0 38.0 31.0 38.0 7 36.8737121522014 38.0 37.0 38.0 35.0 38.0 8 36.403682317458234 38.0 37.0 38.0 34.0 38.0 9 37.05407785699892 38.0 38.0 38.0 36.0 38.0 10-11 37.204956448534716 38.0 38.0 38.0 36.0 38.0 12-13 37.21617426077455 38.0 38.0 38.0 36.0 38.0 14-15 37.20398662160043 38.0 38.0 38.0 36.0 38.0 16-17 37.24949600644442 38.0 38.0 38.0 36.0 38.0 18-19 37.28301018178671 38.0 38.0 38.0 36.0 38.0 20-21 37.31778534389117 38.0 38.0 38.0 36.5 38.0 22-23 37.33122913133832 38.0 38.0 38.0 37.0 38.0 24-25 37.34250153909245 38.0 38.0 38.0 37.0 38.0 26-27 37.317761239900456 38.0 38.0 38.0 37.0 38.0 28-29 37.29966293571893 38.0 38.0 38.0 37.0 38.0 30-31 37.30767399883799 38.0 38.0 38.0 37.0 38.0 32-33 37.2960091121045 38.0 38.0 38.0 37.0 38.0 34-35 37.27494596443508 38.0 38.0 38.0 37.0 38.0 36-37 37.25526384099997 38.0 38.0 38.0 36.5 38.0 38-39 37.24201518856634 38.0 38.0 38.0 36.5 38.0 40-41 37.23264254453515 38.0 38.0 38.0 36.5 38.0 42-43 37.19310087002258 38.0 38.0 38.0 36.0 38.0 44-45 37.14796154687228 38.0 38.0 38.0 36.0 38.0 46-47 37.11127515990722 38.0 38.0 38.0 36.0 38.0 48-49 37.05307110103348 38.0 38.0 38.0 36.0 38.0 50-51 36.98707937097883 38.0 38.0 38.0 36.0 38.0 52-53 36.959703360716944 38.0 38.0 38.0 36.0 38.0 54-55 36.92197683922157 38.0 38.0 38.0 36.0 38.0 56-57 36.848306557412926 38.0 38.0 38.0 35.0 38.0 58-59 36.81252591389522 38.0 38.0 38.0 35.0 38.0 60-61 36.83350326392181 38.0 38.0 38.0 35.0 38.0 62-63 36.837466042181134 38.0 38.0 38.0 35.0 38.0 64-65 36.83794870353037 38.0 38.0 38.0 35.0 38.0 66-67 36.82862558239487 38.0 38.0 38.0 35.0 38.0 68-69 36.80939195729071 38.0 38.0 38.0 35.0 38.0 70-71 36.79071621760802 38.0 38.0 38.0 35.0 38.0 72-73 36.781921731239635 38.0 38.0 38.0 35.0 38.0 74-75 36.75542558594533 38.0 38.0 38.0 35.0 38.0 76-77 36.72578359773464 38.0 38.0 38.0 34.0 38.0 78-79 36.726171673541195 38.0 38.0 38.0 34.0 38.0 80-81 36.71616877332678 38.0 38.0 38.0 34.0 38.0 82-83 36.6512999744844 38.0 38.0 38.0 34.0 38.0 84-85 36.62185387596094 38.0 38.0 38.0 34.0 38.0 86-87 36.61885724322355 38.0 38.0 38.0 34.0 38.0 88-89 36.59930068762844 38.0 38.0 38.0 34.0 38.0 90-91 36.55967047203116 38.0 38.0 38.0 34.0 38.0 92-93 36.540437819258784 38.0 38.0 38.0 34.0 38.0 94-95 36.51343749011461 38.0 37.5 38.0 34.0 38.0 96-97 36.47568951456856 38.0 37.0 38.0 34.0 38.0 98-99 36.46566261097911 38.0 37.0 38.0 34.0 38.0 100 34.824780600251664 38.0 34.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 3.0 20 22.0 21 93.0 22 297.0 23 860.0 24 2090.0 25 4181.0 26 7462.0 27 12828.0 28 20460.0 29 29585.0 30 40057.0 31 51782.0 32 69224.0 33 96876.0 34 150330.0 35 283450.0 36 864150.0 37 2663923.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.88548410139997 16.399778112532502 13.68007438442283 22.034663401644703 2 14.723408612046068 19.94852923211525 43.30939353148338 22.018668624355307 3 18.79428630464789 26.095703559471744 29.850819200652268 25.259190935228094 4 12.892159805513401 18.220553722781208 38.5295161987624 30.35777027294299 5 14.183462961592713 37.05678932371325 35.05882484339203 13.700922871302012 6 30.33165397452388 37.25237756627309 18.870006831605576 13.545961627597453 7 27.439028646658635 32.529759120863986 22.58198271902429 17.44922951345309 8 24.654150128650986 36.745295245753866 20.733052344128474 17.86750228146667 9 25.80293433145464 17.93102501492668 21.41079104650562 34.85524960711306 10-11 24.760486719095027 26.852199585170954 28.227676180184908 20.159637515549107 12-13 25.696237080802316 24.259238834774347 28.62823006119124 21.4162940232321 14-15 22.722454053052886 25.561896970314642 26.59587488487959 25.119774091752888 16-17 22.050357937805426 28.854701403596454 27.160610600059478 21.93433005853864 18-19 22.044622277073596 27.817081984347812 29.14690597751249 20.991389761066102 20-21 22.9115829432144 26.85633516775909 29.155118610971048 21.076963278055462 22-23 22.736161771293276 26.671274076918156 29.032141340453876 21.560422811334696 24-25 22.34149664185804 26.85628087915704 29.119426887034223 21.6827955919507 26-27 22.290665058857385 26.96911542210987 29.091572628559863 21.648646890472882 28-29 22.246103413071392 26.97301928590803 29.13657524088468 21.644302060135896 30-31 22.496576238190134 26.84591586429379 29.050533035005376 21.606974862510697 32-33 22.23960334470738 27.063061300805646 28.99885901613017 21.698476338356805 34-35 22.478266021625952 26.995309585269638 28.99883970811506 21.52758468498935 36-37 22.396931641293026 26.936427827441562 28.9516198510423 21.715020680223116 38-39 22.264305110551465 27.13269279492831 29.007789340049705 21.59521275447052 40-41 22.543605291393135 26.98410323865658 28.831204017638612 21.641087452311673 42-43 22.381973361853895 27.09416205441702 28.688885750735178 21.83497883299391 44-45 22.438954061413355 27.16976608895133 28.599881724283755 21.79139812535156 46-47 22.483935312819163 27.220743881946923 28.31750582115447 21.977814984079437 48-49 22.497571646228025 27.257561188640008 28.272904369861777 21.971962795270194 50-51 22.466139710468138 27.430378502141377 28.143863064262593 21.959618723127893 52-53 22.684127620308146 27.334532608796962 28.04987246047207 21.93146731042282 54-55 22.637422065269575 27.258018177937483 28.078660483422226 22.025899273370715 56-57 22.592688226758312 27.401014221361347 28.079269393115403 21.927028158764944 58-59 22.596537242842317 27.37088082929246 28.072578868816034 21.960003059049193 60-61 22.639083612016115 27.359608258962353 28.128749649241875 21.87255847977966 62-63 22.637472988761257 27.38160289084875 28.13932629576402 21.84159782462598 64-65 22.645048665378024 27.278698012620932 28.13345151838532 21.942801803615723 66-67 22.758130708568352 27.309055570512104 27.988101882555338 21.944711838364206 68-69 22.639533581928884 27.29524817710214 28.17825480094359 21.886963440025383 70-71 22.766498086356762 27.076474061523253 28.192048379125996 21.96497947299399 72-73 22.881323112874345 27.15963689636612 27.99139967995734 21.967640310802203 74-75 22.562726570845825 27.231120502749068 28.12799803116809 22.078154895237017 76-77 22.55304138849822 27.31166720305222 28.02367953346407 22.111611874985492 78-79 22.588189263821672 27.233949395235392 27.948708385735543 22.229152955207393 80-81 22.528290219692913 27.363441421524904 27.947183188326736 22.16108517045545 82-83 22.567267813440875 27.312940819712683 27.994589693175975 22.125201673670468 84-85 22.6230644184772 27.325620820102536 27.93483103817136 22.116483723248905 86-87 22.4849395919145 27.345227744672094 27.996888262659915 22.17294440075349 88-89 22.560464251812828 27.361742248376235 27.950338492689447 22.127455007121487 90-91 22.592912095064325 27.41052235222132 27.907583215481047 22.088982337233308 92-93 22.579676894793227 27.398067363091506 27.902783588255986 22.11947215385928 94-95 22.455171323235305 27.466131506871555 27.887357902042126 22.191339267851014 96-97 22.65258744680094 27.532463050599098 27.902090672834966 21.912858829764996 98-99 23.62468068895689 29.499227441974725 28.113066877770304 18.76302499129809 100 22.621859378293273 30.27842568557826 22.09311526285606 25.006599673272405 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 578.0 1 565.5 2 786.5 3 1125.5 4 1461.5 5 2126.0 6 2725.5 7 3503.0 8 4653.5 9 5346.0 10 5372.0 11 5299.0 12 5673.5 13 6908.5 14 9565.5 15 12822.0 16 15777.5 17 18106.0 18 18682.0 19 17489.0 20 15549.5 21 13696.5 22 13106.5 23 14303.5 24 17336.5 25 22637.0 26 29540.0 27 37118.0 28 45316.5 29 55065.0 30 64747.0 31 74060.5 32 85087.5 33 96453.5 34 106961.0 35 117131.0 36 128510.0 37 138425.0 38 146162.5 39 152993.0 40 159709.0 41 165016.5 42 167420.5 43 171637.0 44 175785.0 45 178283.0 46 179471.0 47 178737.0 48 178180.0 49 176786.0 50 175287.5 51 171833.0 52 165812.0 53 157841.5 54 147570.0 55 137734.5 56 127049.5 57 114884.0 58 102809.5 59 89833.0 60 75873.0 61 61885.5 62 49005.5 63 37926.5 64 28558.0 65 21460.5 66 16150.0 67 12362.5 68 9329.5 69 6795.5 70 4962.0 71 3581.5 72 2500.5 73 1655.0 74 1065.0 75 680.5 76 417.0 77 241.5 78 156.5 79 111.0 80 70.5 81 42.5 82 26.5 83 17.0 84 14.0 85 12.0 86 9.0 87 8.0 88 5.0 89 2.0 90 2.0 91 2.0 92 1.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0020708876475972818 3 0.0016287880374360644 4 0.0 5 0.0 6 4.6536801069601836E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 2.5598632753753137E-4 26-27 0.002013212258205062 28-29 0.006914370296423943 30-31 0.0026795205988146037 32-33 0.005625238226504769 34-35 0.002713785786149235 36-37 0.0011854689674154488 38-39 1.1800777388011213E-5 40-41 5.9363640767339166E-5 42-43 0.002389400047931365 44-45 4.693458774643818E-4 46-47 2.0632665490361994E-4 48-49 0.0016523303549364715 50-51 5.305148436819507E-4 52-53 0.0 54-55 0.00489444644311439 56-57 0.04268901431520084 58-59 0.06420641682668464 60-61 0.030911021259885024 62-63 0.012922367584499361 64-65 0.0015107176299445073 66-67 0.0 68-69 0.0020270571052458646 70-71 0.0033025032841189034 72-73 0.011562730714930252 74-75 0.015093369982049914 76-77 0.0198443870460236 78-79 0.0053930179134150285 80-81 0.007392843671319771 82-83 0.030569663271341394 84-85 0.017456391137348825 86-87 0.01285343154200399 88-89 0.005646805145345562 90-91 1.4708551522438042E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 27.0 20-21 147.0 22-23 318.0 24-25 418.0 26-27 897.0 28-29 2347.0 30-31 7238.0 32-33 9042.0 34-35 12542.0 36-37 21110.0 38-39 25954.0 40-41 25628.0 42-43 29123.0 44-45 34266.0 46-47 35014.0 48-49 33210.0 50-51 30064.0 52-53 28538.0 54-55 30297.0 56-57 31776.0 58-59 31834.0 60-61 31215.0 62-63 29774.0 64-65 31308.0 66-67 33225.0 68-69 34186.0 70-71 34247.0 72-73 32147.0 74-75 32577.0 76-77 33930.0 78-79 35412.0 80-81 35193.0 82-83 33502.0 84-85 32940.0 86-87 33908.0 88-89 35580.0 90-91 36656.0 92-93 36050.0 94-95 42365.0 96-97 134163.0 98-99 303304.0 100-101 2856202.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.30196267288673 #Duplication Level Percentage of deduplicated Percentage of total 1 92.42060644848122 82.53341547267824 2 5.6255221652334315 10.047403408303456 3 1.15486385453099 3.0939482648877767 4 0.37705481153378395 1.3468693882088925 5 0.1761659000620226 0.7865980315787117 6 0.08393154814173408 0.4497151187538439 7 0.04721969705596418 0.29517681367417126 8 0.027987067410842704 0.19994400393973116 9 0.019517524646324377 0.15686579316898855 >10 0.06481085302998228 0.8876980105735096 >50 0.0016202958399167383 0.09271400437474271 >100 6.635331097408728E-4 0.08903419952980234 >500 3.630092402515166E-5 0.020617490328135087 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.6536801069601836E-5 0.0 0.0 0.0 3 0.0 4.6536801069601836E-5 0.0 0.0 0.0 4 0.0 6.980520160440275E-5 0.0 0.0 0.0 5 0.0 6.980520160440275E-5 0.0 0.0 0.0 6 6.980520160440275E-5 6.980520160440275E-5 0.0 0.0 0.0 7 6.980520160440275E-5 6.980520160440275E-5 0.0 2.3268400534800918E-5 0.0 8 6.980520160440275E-5 6.980520160440275E-5 0.0 2.3268400534800918E-5 2.3268400534800918E-5 9 6.980520160440275E-5 9.307360213920367E-5 0.0 4.6536801069601836E-5 4.6536801069601836E-5 10-11 6.980520160440275E-5 9.307360213920367E-5 0.0 8.143940187180321E-5 4.6536801069601836E-5 12-13 6.980520160440275E-5 9.307360213920367E-5 0.0 1.1634200267400459E-4 4.6536801069601836E-5 14-15 9.307360213920367E-5 1.2797620294140505E-4 0.0 1.1634200267400459E-4 4.6536801069601836E-5 16-17 1.396104032088055E-4 1.396104032088055E-4 0.0 1.1634200267400459E-4 5.8171001337002296E-5 18-19 1.396104032088055E-4 1.6287880374360643E-4 0.0 1.396104032088055E-4 6.980520160440275E-5 20-21 1.396104032088055E-4 1.977814045458078E-4 0.0 1.6287880374360643E-4 6.980520160440275E-5 22-23 1.396104032088055E-4 2.6758660615021053E-4 0.0 1.745130040110069E-4 8.143940187180321E-5 24-25 1.396104032088055E-4 3.0248920695241194E-4 0.0 2.0941560481320826E-4 9.307360213920367E-5 26-27 1.396104032088055E-4 3.2575760748721286E-4 0.0 2.559524058828101E-4 9.307360213920367E-5 28-29 1.396104032088055E-4 3.2575760748721286E-4 0.0 5.58441612835222E-4 9.307360213920367E-5 30-31 1.396104032088055E-4 4.1883120962641653E-4 0.0 0.0017102274393078676 1.0470780240660413E-4 32-33 1.5124460347620597E-4 4.1883120962641653E-4 0.0 0.004211580496798966 1.1634200267400459E-4 34-35 1.6287880374360643E-4 4.6536801069601836E-4 0.0 0.006631494152418262 1.1634200267400459E-4 36-37 1.6287880374360643E-4 5.119048117656202E-4 0.0 0.010668561645206222 1.1634200267400459E-4 38-39 1.6287880374360643E-4 5.351732123004211E-4 0.0 0.017532739802972493 1.1634200267400459E-4 40-41 1.6287880374360643E-4 6.282468144396247E-4 0.0 0.02515314097811979 1.1634200267400459E-4 42-43 1.6287880374360643E-4 6.282468144396247E-4 0.0 0.03241288194497768 1.1634200267400459E-4 44-45 1.6287880374360643E-4 6.515152149744257E-4 0.0 0.0406498957342972 1.1634200267400459E-4 46-47 1.6287880374360643E-4 6.747836155092266E-4 0.0 0.04917776453030174 1.1634200267400459E-4 48-49 1.6287880374360643E-4 6.747836155092266E-4 0.0 0.05772890172684108 1.1634200267400459E-4 50-51 1.8614720427840735E-4 7.911256181832312E-4 0.0 0.06695482253888965 1.1634200267400459E-4 52-53 1.8614720427840735E-4 7.911256181832312E-4 0.0 0.07555249653649858 1.1634200267400459E-4 54-55 1.8614720427840735E-4 7.911256181832312E-4 0.0 0.0837080709239463 1.1634200267400459E-4 56-57 1.8614720427840735E-4 7.911256181832312E-4 0.0 0.08953680525791394 1.1634200267400459E-4 58-59 1.8614720427840735E-4 8.027598184506316E-4 0.0 0.09503978198439435 1.1634200267400459E-4 60-61 1.977814045458078E-4 8.376624192528331E-4 0.0 0.10058929551194437 1.396104032088055E-4 62-63 2.559524058828101E-4 8.376624192528331E-4 0.0 0.10562690422772877 1.6287880374360643E-4 64-65 2.559524058828101E-4 8.841992203224349E-4 0.0 0.11108334415313958 1.6287880374360643E-4 66-67 2.559524058828101E-4 8.841992203224349E-4 0.0 0.11642344207587639 1.6287880374360643E-4 68-69 2.559524058828101E-4 9.191018211246362E-4 0.0 0.1216471979959392 1.6287880374360643E-4 70-71 2.559524058828101E-4 9.307360213920367E-4 0.0 0.12582387589193594 1.6287880374360643E-4 72-73 3.0248920695241194E-4 9.307360213920367E-4 0.0 0.1294304779748301 1.6287880374360643E-4 74-75 3.0248920695241194E-4 0.00101217542326384 0.0 0.13278112765184144 1.6287880374360643E-4 76-77 3.0248920695241194E-4 0.0010587122243334419 0.0 0.13542209111254133 1.6287880374360643E-4 78-79 3.0248920695241194E-4 0.0010703464246008421 0.0 0.1372951973555928 1.6287880374360643E-4 80-81 3.0248920695241194E-4 0.0010703464246008421 0.0 0.13779546796709102 1.6287880374360643E-4 82-83 3.0248920695241194E-4 0.0010819806248682426 0.0 0.13831900697912405 1.8614720427840735E-4 84-85 3.0248920695241194E-4 0.001116883225670444 0.0 0.13859822778554165 1.8614720427840735E-4 86-87 3.0248920695241194E-4 0.001116883225670444 0.0 0.13869130138768088 1.8614720427840735E-4 88 3.0248920695241194E-4 0.001140151626205245 0.0 0.13870293558794827 2.0941560481320826E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6180 0.0 50.716198 1 GTATCAA 11700 0.0 40.201157 1 TCAACGC 13540 0.0 34.039036 4 ATCAACG 13585 0.0 33.959423 3 TATCAAC 13830 0.0 33.575626 2 CAACGCA 13870 0.0 33.22917 5 AACGCAG 14250 0.0 32.343056 6 ACGCAGA 16290 0.0 28.319048 7 CGCAGAG 16885 0.0 27.371914 8 TGGTATC 2630 0.0 25.595387 2 GTGGTAT 2885 0.0 25.265093 1 GCAGAGT 19290 0.0 24.003744 9 GTACATG 14850 0.0 21.279373 1 GAGTACT 11100 0.0 21.146994 12-13 TACATGG 14885 0.0 20.538015 2 ACATGGG 14785 0.0 20.212458 3 CAGAGTA 19050 0.0 20.153852 10-11 GTACTTT 12015 0.0 19.48325 14-15 AGAGTAC 17650 0.0 18.849703 10-11 GTCAACG 565 0.0 18.212961 1 >>END_MODULE