##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139443_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4723522 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.84327542033254 28.0 18.0 33.0 18.0 33.0 2 30.38787857873849 32.0 29.0 33.0 27.0 34.0 3 32.10095115466806 33.0 31.0 33.0 29.0 34.0 4 32.05921619503413 33.0 33.0 33.0 30.0 34.0 5 32.570666549240165 33.0 33.0 33.0 32.0 34.0 6 35.963976879963724 38.0 36.0 38.0 33.0 38.0 7 37.00768579039115 38.0 38.0 38.0 35.0 38.0 8 36.55898056577274 38.0 37.0 38.0 34.0 38.0 9 37.15607612285917 38.0 38.0 38.0 36.0 38.0 10-11 37.33184803627462 38.0 38.0 38.0 36.5 38.0 12-13 37.3294549067412 38.0 38.0 38.0 36.0 38.0 14-15 37.3362246433911 38.0 38.0 38.0 36.5 38.0 16-17 37.37661463204786 38.0 38.0 38.0 37.0 38.0 18-19 37.39728024977972 38.0 38.0 38.0 37.0 38.0 20-21 37.42335005360077 38.0 38.0 38.0 37.0 38.0 22-23 37.43999226454981 38.0 38.0 38.0 37.0 38.0 24-25 37.45208708850632 38.0 38.0 38.0 37.0 38.0 26-27 37.42516153746001 38.0 38.0 38.0 37.0 38.0 28-29 37.401127747589854 38.0 38.0 38.0 37.0 38.0 30-31 37.41483850582862 38.0 38.0 38.0 37.0 38.0 32-33 37.40346692973613 38.0 38.0 38.0 37.0 38.0 34-35 37.379995626918756 38.0 38.0 38.0 37.0 38.0 36-37 37.362738368503315 38.0 38.0 38.0 37.0 38.0 38-39 37.354547293097184 38.0 38.0 38.0 37.0 38.0 40-41 37.34918465498063 38.0 38.0 38.0 37.0 38.0 42-43 37.315659430533614 38.0 38.0 38.0 37.0 38.0 44-45 37.27918988674056 38.0 38.0 38.0 37.0 38.0 46-47 37.251356245903196 38.0 38.0 38.0 37.0 38.0 48-49 37.19767402074207 38.0 38.0 38.0 37.0 38.0 50-51 37.14875187263499 38.0 38.0 38.0 36.0 38.0 52-53 37.129518809522395 38.0 38.0 38.0 36.0 38.0 54-55 37.10407790583986 38.0 38.0 38.0 36.0 38.0 56-57 37.04376913291658 38.0 38.0 38.0 36.0 38.0 58-59 37.01457291423493 38.0 38.0 38.0 36.0 38.0 60-61 37.037352241088456 38.0 38.0 38.0 36.0 38.0 62-63 37.04268440250383 38.0 38.0 38.0 36.0 38.0 64-65 37.047920689811235 38.0 38.0 38.0 36.0 38.0 66-67 37.04062618861485 38.0 38.0 38.0 36.0 38.0 68-69 37.02770992715791 38.0 38.0 38.0 36.0 38.0 70-71 37.01467702128218 38.0 38.0 38.0 36.0 38.0 72-73 37.007778564151366 38.0 38.0 38.0 36.0 38.0 74-75 36.98632369787144 38.0 38.0 38.0 36.0 38.0 76-77 36.963520428875654 38.0 38.0 38.0 36.0 38.0 78-79 36.96604785658624 38.0 38.0 38.0 36.0 38.0 80-81 36.960898426496215 38.0 38.0 38.0 35.5 38.0 82-83 36.908542651556225 38.0 38.0 38.0 35.0 38.0 84-85 36.885081487295494 38.0 38.0 38.0 35.0 38.0 86-87 36.883534569033635 38.0 38.0 38.0 35.0 38.0 88-89 36.86550864995897 38.0 38.0 38.0 35.0 38.0 90-91 36.835939124065206 38.0 38.0 38.0 35.0 38.0 92-93 36.8205881794299 38.0 38.0 38.0 35.0 38.0 94-95 36.79760865219347 38.0 38.0 38.0 35.0 38.0 96-97 36.76303707909432 38.0 38.0 38.0 35.0 38.0 98-99 36.74046713953332 38.0 38.0 38.0 34.5 38.0 100 35.29047847492018 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 4.0 20 11.0 21 66.0 22 244.0 23 784.0 24 1804.0 25 3736.0 26 6772.0 27 11188.0 28 17910.0 29 26893.0 30 36877.0 31 48171.0 32 63866.0 33 86784.0 34 134246.0 35 254815.0 36 821549.0 37 3207802.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.025736304393206 17.44787046614793 13.225660852220017 22.300732377238848 2 14.839102234590035 20.059144187669318 42.92770080357846 22.17405277416219 3 18.943910417906935 26.011380679013023 29.838948021824752 25.205760881255284 4 13.125544879435303 18.032540125779025 38.204056210598786 30.637858784186882 5 14.244017173633223 37.21680018291444 34.875707099789985 13.663475543662354 6 30.664196470761585 37.0621266549127 18.637594230733402 13.63608264359231 7 27.626885192870915 32.63088432741501 22.27009845619434 17.472132023519737 8 24.939017961597298 36.61333640448801 20.53313184526292 17.914513788651774 9 26.04228370271166 17.90286993476478 21.208729418429723 34.846116944093836 10-11 24.93622343666442 26.859100052884266 27.989972313032517 20.21470419741879 12-13 25.82957166283972 24.32658300310658 28.361188960271594 21.482656373782106 14-15 22.92716113103739 25.610169699643613 26.333051904913322 25.129617264405667 16-17 22.231155057603203 28.852443155763858 26.974395377008936 21.942006409624003 18-19 22.209052905861345 27.89912908207054 28.84052408351226 21.051293928555854 20-21 23.177913084347605 26.89031064290145 28.7946894523683 21.137086820382645 22-23 22.954134667683775 26.687474606712357 28.68762408173955 21.670766643864315 24-25 22.62142148047071 26.890432200876784 28.7413831855172 21.746763133135307 26-27 22.453667232511336 27.016668699641517 28.77757433911376 21.752089728733388 28-29 22.438074884255187 27.03022139703892 28.800543948708324 21.73115976999757 30-31 22.69841929534321 26.924534319140932 28.68225346999723 21.694792915518622 32-33 22.453987286842228 27.152762409544035 28.58847741391112 21.80477288970261 34-35 22.64537573821443 27.101043564278598 28.62381671839765 21.629763979109327 36-37 22.594231400242222 26.987707469079368 28.58854074644163 21.82952038423678 38-39 22.428213357333053 27.199513377282603 28.682074951347413 21.69019831403693 40-41 22.70155013190111 27.038877708013302 28.52271512316963 21.736857036915954 42-43 22.591999560248805 27.122625689824243 28.368260215790013 21.917114534136942 44-45 22.641357375598606 27.227729086048246 28.2510470224454 21.879866515907747 46-47 22.708522145998657 27.256416541925926 27.970515428475423 22.064545883599994 48-49 22.6579247168808 27.34712638322864 27.920667040888596 22.074281859001957 50-51 22.6538747962013 27.49202654534544 27.831954641910773 22.022144016542487 52-53 22.86215718589962 27.41347879354899 27.689462086516137 22.034901934035254 54-55 22.807999956836664 27.330151414913644 27.730055123941337 22.131793504308355 56-57 22.760408769783737 27.515964999721433 27.702530759257893 22.02109547123694 58-59 22.792117663491158 27.440180887689152 27.719226680583503 22.048474768236186 60-61 22.827632858989357 27.469957979131504 27.736484686267605 21.965924475611533 62-63 22.828322504528316 27.51224630613554 27.720056646150347 21.939374543185792 64-65 22.89448382022903 27.447298256382712 27.65934005332515 21.998877870063108 66-67 23.05524895767812 27.48079624547559 27.477493336411207 21.98646146043508 68-69 22.831348131510794 27.527256360428304 27.667267517338296 21.97412799072261 70-71 22.943675926890425 27.287772071423177 27.706089058296808 22.062462943389594 72-73 23.080387937402314 27.374126859714476 27.496465300477198 22.049019902406013 74-75 22.69921198553314 27.41988511195656 27.690049992586324 22.19085290992398 76-77 22.721276342300627 27.382262856207195 27.689225528829205 22.20723527266297 78-79 22.723811302380703 27.32003127227209 27.622568798549054 22.33358862679816 80-81 22.72598604490271 27.431702191534075 27.526011287486014 22.3163004760772 82-83 22.717615417976354 27.321361771209613 27.71433744752654 22.24668536328749 84-85 22.7760367680735 27.287052082754425 27.6782918247646 22.258619324407476 86-87 22.619780536696354 27.362034043855672 27.723276613228958 22.29490880621901 88-89 22.694931120295976 27.359134942987467 27.660311770578904 22.285622166137657 90-91 22.709885432952724 27.411149219434055 27.642804583778098 22.236160763835127 92-93 22.773909631054625 27.384496556649395 27.605371130692347 22.236222681603632 94-95 22.610692006251014 27.43361242953687 27.642966143050934 22.31272942116118 96-97 22.784555616333968 27.4977170069719 27.648328951773948 22.069398424920188 98-99 23.853742924484273 29.455436188409706 27.78161165857695 18.909209228529072 100 30.46834721850844 40.43325416424178 29.098398617249778 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 575.0 1 562.5 2 709.0 3 990.5 4 1367.0 5 2043.0 6 2618.0 7 3186.0 8 3951.0 9 4516.0 10 4813.5 11 5068.5 12 5637.0 13 7032.0 14 9846.5 15 13112.5 16 16003.5 17 18506.0 18 19223.5 19 17847.5 20 15891.5 21 14272.5 22 13922.0 23 15556.0 24 19225.5 25 24939.0 26 32757.0 27 41695.0 28 50801.5 29 61340.5 30 71728.5 31 81822.0 32 93555.5 33 106453.5 34 118626.5 35 129752.0 36 142618.0 37 153287.0 38 161283.5 39 169357.0 40 177498.5 41 183531.5 42 187188.0 43 191967.0 44 196654.0 45 199680.5 46 200528.0 47 200923.0 48 201329.0 49 200443.5 50 197870.5 51 193399.5 52 186627.5 53 177758.5 54 167075.5 55 155951.5 56 143353.5 57 129232.0 58 115264.0 59 99798.5 60 84013.0 61 68619.0 62 54011.0 63 41527.5 64 31553.5 65 23873.0 66 17748.0 67 13439.5 68 10283.5 69 7662.5 70 5564.0 71 3889.0 72 2670.0 73 1759.5 74 1134.5 75 735.5 76 478.0 77 296.5 78 201.5 79 140.5 80 86.5 81 57.0 82 43.5 83 29.0 84 21.5 85 17.5 86 10.5 87 5.5 88 4.5 89 3.0 90 2.0 91 1.5 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.00317559651463463 3 0.001651310187610008 4 0.0 5 4.2341286861795074E-5 6 2.1170643430897538E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 2.646719296150527E-4 26-27 0.0020858733959554176 28-29 0.008473323224658727 30-31 0.002968530607034824 32-33 0.005864227204808666 34-35 0.003174385056102995 36-37 0.0012513121398132765 38-39 6.456161373044752E-5 40-41 6.499455183169271E-5 42-43 0.0026720278815748517 44-45 7.366374785976578E-4 46-47 2.774269251930503E-4 48-49 0.0022511048052799945 50-51 6.100367309893914E-4 52-53 0.0 54-55 0.005085208814974161 56-57 0.04771035450147947 58-59 0.07044230902203509 60-61 0.03524860163458761 62-63 0.01510795411793975 64-65 0.0016064422650644125 66-67 0.0 68-69 0.002223513434663646 70-71 0.004924183008310516 72-73 0.014708868487882198 74-75 0.01716556286056806 76-77 0.0226617416673297 78-79 0.006331630514297926 80-81 0.008166814920108685 82-83 0.033589059968350946 84-85 0.01973251043813997 86-87 0.014873112253675802 88-89 0.0068678555507105795 90-91 6.851271904372687E-5 92-93 0.0 94-95 0.0 96-97 2.8519579975033957E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 43.0 20-21 208.0 22-23 358.0 24-25 482.0 26-27 1152.0 28-29 3024.0 30-31 9033.0 32-33 11857.0 34-35 16170.0 36-37 26603.0 38-39 31278.0 40-41 30556.0 42-43 35071.0 44-45 41253.0 46-47 41933.0 48-49 39385.0 50-51 35836.0 52-53 34329.0 54-55 36795.0 56-57 37833.0 58-59 38124.0 60-61 36995.0 62-63 35349.0 64-65 37329.0 66-67 39726.0 68-69 40971.0 70-71 40958.0 72-73 38276.0 74-75 38589.0 76-77 40376.0 78-79 41967.0 80-81 42463.0 82-83 39149.0 84-85 38572.0 86-87 40097.0 88-89 41785.0 90-91 42209.0 92-93 41631.0 94-95 48266.0 96-97 145024.0 98-99 1093695.0 100-101 2288772.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.75060241393798 #Duplication Level Percentage of deduplicated Percentage of total 1 92.30319268940356 81.91963955914362 2 5.587928009558815 9.918639541881245 3 1.2140044674895187 3.232308834687203 4 0.41054687358973413 1.45745129400991 5 0.19026488375717887 0.8443061525833755 6 0.09405800850582019 0.5008622950048107 7 0.05841430621880201 0.3629013406557646 8 0.036352215180210895 0.2581024797059855 9 0.022707867372299607 0.18138032179446573 >10 0.08011718904704658 1.0896445160304984 >50 0.0016811135559042355 0.10454974690234259 >100 6.9794876223209E-4 0.10772568351661777 >500 3.4427558849397796E-5 0.022488234084186622 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 2.1170643430897537E-5 0.0 3 0.0 0.0 0.0 4.2341286861795074E-5 0.0 4 0.0 2.1170643430897537E-5 0.0 6.351193029269261E-5 0.0 5 0.0 2.1170643430897537E-5 0.0 6.351193029269261E-5 0.0 6 4.2341286861795074E-5 2.1170643430897537E-5 0.0 6.351193029269261E-5 2.1170643430897537E-5 7 4.2341286861795074E-5 4.2341286861795074E-5 0.0 6.351193029269261E-5 4.2341286861795074E-5 8 4.2341286861795074E-5 4.2341286861795074E-5 0.0 6.351193029269261E-5 6.351193029269261E-5 9 4.2341286861795074E-5 1.2702386058538521E-4 0.0 6.351193029269261E-5 8.468257372359015E-5 10-11 8.468257372359015E-5 1.2702386058538521E-4 0.0 6.351193029269261E-5 8.468257372359015E-5 12-13 8.468257372359015E-5 1.2702386058538521E-4 0.0 6.351193029269261E-5 8.468257372359015E-5 14-15 8.468257372359015E-5 1.5877982573173153E-4 0.0 6.351193029269261E-5 1.0585321715448769E-4 16-17 1.2702386058538521E-4 1.693651474471803E-4 0.0 8.468257372359015E-5 1.0585321715448769E-4 18-19 1.2702386058538521E-4 1.693651474471803E-4 0.0 9.526789543903892E-5 1.693651474471803E-4 20-21 1.2702386058538521E-4 1.693651474471803E-4 0.0 1.0585321715448769E-4 2.2229175602442417E-4 22-23 1.2702386058538521E-4 2.011211125935266E-4 0.0 1.1643853886993645E-4 2.3287707773987293E-4 24-25 1.2702386058538521E-4 2.328770777398729E-4 0.0 1.2702386058538521E-4 2.3287707773987293E-4 26-27 1.2702386058538521E-4 2.5404772117077043E-4 0.0 1.9053579087807785E-4 2.3287707773987293E-4 28-29 1.2702386058538521E-4 2.5404772117077043E-4 0.0 4.4458351204884833E-4 2.3287707773987293E-4 30-31 1.2702386058538521E-4 2.9638900803256554E-4 0.0 0.001429018431585584 2.434623994553217E-4 32-33 1.2702386058538521E-4 3.387302948943606E-4 0.0 0.0034402295575208497 2.5404772117077043E-4 34-35 1.4819450401628277E-4 4.763394771951946E-4 0.0 0.005874853552074066 2.9638900803256554E-4 36-37 1.4819450401628277E-4 5.927780160651311E-4 0.0 0.009876105160513703 2.9638900803256554E-4 38-39 1.4819450401628277E-4 6.139486594960285E-4 0.0 0.017063538605303415 3.2814497317891185E-4 40-41 1.4819450401628277E-4 6.562899463578237E-4 0.0 0.023838144503190627 3.387302948943606E-4 42-43 1.4819450401628277E-4 7.092165549350676E-4 0.0 0.03087738344396406 3.387302948943606E-4 44-45 1.4819450401628277E-4 8.891670240976966E-4 0.0 0.03798013431503018 3.5990093832525817E-4 46-47 1.4819450401628277E-4 0.0010161908846830817 0.0 0.04617317332278753 3.704862600407069E-4 48-49 1.4819450401628277E-4 0.0010161908846830817 0.0 0.05464143069514654 4.022422251870532E-4 50-51 1.4819450401628277E-4 0.001227897318992057 0.0 0.06258042198173312 4.022422251870532E-4 52-53 1.4819450401628277E-4 0.0012702386058538523 0.0 0.06993722057397 4.2341286861795075E-4 54-55 1.4819450401628277E-4 0.0013231652144310962 0.0 0.07750572560051588 4.445835120488483E-4 56-57 1.4819450401628277E-4 0.001333750536146545 0.0 0.08495779208819182 4.445835120488483E-4 58-59 1.4819450401628277E-4 0.001333750536146545 0.0 0.09169005669921723 4.5516883376429707E-4 60-61 1.5877982573173153E-4 0.0013866771447237887 0.0 0.09877163692685247 4.6575415547974586E-4 62-63 1.693651474471803E-4 0.0013972624664392375 0.0 0.10529219510356891 4.6575415547974586E-4 64-65 1.693651474471803E-4 0.0015666276138864177 0.0 0.11136816976823649 4.6575415547974586E-4 66-67 1.693651474471803E-4 0.0015666276138864177 0.0 0.1174441444329041 4.6575415547974586E-4 68-69 1.693651474471803E-4 0.0015877982573173153 0.0 0.12400704389648232 4.6575415547974586E-4 70-71 1.693651474471803E-4 0.001608968900748213 0.0 0.12927853411077583 4.6575415547974586E-4 72-73 1.693651474471803E-4 0.001608968900748213 0.0 0.13401017291758144 4.869247989106434E-4 74-75 1.693651474471803E-4 0.001608968900748213 0.0 0.1374821584402486 4.975101206260921E-4 76-77 1.693651474471803E-4 0.0016618955093254568 0.0 0.14079536413718408 5.080954423415409E-4 78-79 1.693651474471803E-4 0.001693651474471803 0.0 0.14338876795746902 5.080954423415409E-4 80-81 1.693651474471803E-4 0.001693651474471803 0.0 0.14417208176441224 5.292660857724384E-4 82-83 1.693651474471803E-4 0.001693651474471803 0.0 0.14474368913704647 5.50436729203336E-4 84-85 1.693651474471803E-4 0.001693651474471803 0.0 0.14491305428449364 5.50436729203336E-4 86-87 1.693651474471803E-4 0.0017571634047644957 0.0 0.14509300475365627 5.50436729203336E-4 88 1.693651474471803E-4 0.0018418459784880859 0.0 0.1451035900753717 5.50436729203336E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7690 0.0 47.42117 1 GTATCAA 13580 0.0 36.0129 1 TCAACGC 15760 0.0 30.302837 4 ATCAACG 15840 0.0 30.203712 3 TATCAAC 16090 0.0 29.99921 2 CAACGCA 16045 0.0 29.817497 5 AACGCAG 16225 0.0 29.460537 6 ACGCAGA 18565 0.0 25.79296 7 CGCAGAG 19080 0.0 25.096764 8 GTGGTAT 4265 0.0 22.794067 1 TGGTATC 3990 0.0 22.343533 2 GCAGAGT 21855 0.0 21.929571 9 GTACATG 18230 0.0 21.564018 1 TACATGG 18205 0.0 21.103928 2 ACATGGG 18235 0.0 20.463255 3 GAGTACT 11240 0.0 20.337915 12-13 CAGAGTA 21480 0.0 19.357853 10-11 GTACTTT 12045 0.0 18.785133 14-15 CATGGGG 12995 0.0 18.554918 4 AGAGTAC 19880 0.0 17.926329 10-11 >>END_MODULE