##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139442_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5439231 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.690146640214397 28.0 18.0 33.0 18.0 33.0 2 30.236320906392834 31.0 28.0 33.0 27.0 34.0 3 32.00341757869816 33.0 31.0 33.0 29.0 34.0 4 31.937011868037963 33.0 31.0 33.0 29.0 34.0 5 32.521619140646905 33.0 33.0 33.0 32.0 34.0 6 35.897504077322694 38.0 36.0 38.0 31.0 38.0 7 36.94391560130467 38.0 37.0 38.0 35.0 38.0 8 36.46677811624474 38.0 37.0 38.0 34.0 38.0 9 37.102149917883615 38.0 38.0 38.0 36.0 38.0 10-11 37.26934616308813 38.0 38.0 38.0 36.0 38.0 12-13 37.268190117316216 38.0 38.0 38.0 36.0 38.0 14-15 37.26752954599648 38.0 38.0 38.0 36.5 38.0 16-17 37.31058011693197 38.0 38.0 38.0 36.5 38.0 18-19 37.33611120763211 38.0 38.0 38.0 37.0 38.0 20-21 37.36676926253968 38.0 38.0 38.0 37.0 38.0 22-23 37.38245433430666 38.0 38.0 38.0 37.0 38.0 24-25 37.39352790054477 38.0 38.0 38.0 37.0 38.0 26-27 37.366081490463756 38.0 38.0 38.0 37.0 38.0 28-29 37.339842636483084 38.0 38.0 38.0 37.0 38.0 30-31 37.34622416110379 38.0 38.0 38.0 37.0 38.0 32-33 37.33052610461597 38.0 38.0 38.0 37.0 38.0 34-35 37.29926413919424 38.0 38.0 38.0 37.0 38.0 36-37 37.27235625920106 38.0 38.0 38.0 37.0 38.0 38-39 37.24178058363462 38.0 38.0 38.0 37.0 38.0 40-41 37.262180093489064 38.0 38.0 38.0 37.0 38.0 42-43 37.22800404832443 38.0 38.0 38.0 37.0 38.0 44-45 37.18289754773623 38.0 38.0 38.0 36.0 38.0 46-47 37.148629355544045 38.0 38.0 38.0 36.0 38.0 48-49 37.088853912382206 38.0 38.0 38.0 36.0 38.0 50-51 37.0283028389076 38.0 38.0 38.0 36.0 38.0 52-53 37.00534109249807 38.0 38.0 38.0 36.0 38.0 54-55 36.97196399857661 38.0 38.0 38.0 36.0 38.0 56-57 36.90589204946519 38.0 38.0 38.0 36.0 38.0 58-59 36.87062260703368 38.0 38.0 38.0 35.5 38.0 60-61 36.88756811493584 38.0 38.0 38.0 35.5 38.0 62-63 36.89211029732883 38.0 38.0 38.0 35.0 38.0 64-65 36.89618377089744 38.0 38.0 38.0 35.0 38.0 66-67 36.887506155216876 38.0 38.0 38.0 35.0 38.0 68-69 36.87087407709605 38.0 38.0 38.0 35.0 38.0 70-71 36.860942643527366 38.0 38.0 38.0 35.0 38.0 72-73 36.854677073388494 38.0 38.0 38.0 35.0 38.0 74-75 36.83349003303728 38.0 38.0 38.0 35.0 38.0 76-77 36.8118743635343 38.0 38.0 38.0 35.0 38.0 78-79 36.8135183907621 38.0 38.0 38.0 35.0 38.0 80-81 36.807905165656635 38.0 38.0 38.0 35.0 38.0 82-83 36.75295105608433 38.0 38.0 38.0 35.0 38.0 84-85 36.73067007062308 38.0 38.0 38.0 35.0 38.0 86-87 36.7304503545719 38.0 38.0 38.0 35.0 38.0 88-89 36.71393398418481 38.0 38.0 38.0 34.0 38.0 90-91 36.67683760854683 38.0 38.0 38.0 34.0 38.0 92-93 36.66392256404275 38.0 38.0 38.0 34.0 38.0 94-95 36.63949311024605 38.0 38.0 38.0 34.0 38.0 96-97 36.607803476839386 38.0 38.0 38.0 34.0 38.0 98-99 36.59594780155304 38.0 38.0 38.0 34.0 38.0 100 35.0208923486941 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 5.0 20 37.0 21 104.0 22 398.0 23 1060.0 24 2626.0 25 5285.0 26 9289.0 27 16035.0 28 25598.0 29 37572.0 30 50595.0 31 64269.0 32 83673.0 33 114035.0 34 176380.0 35 328401.0 36 1008337.0 37 3515530.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.846033933841014 17.245470913075764 13.47745664782393 22.43103850525929 2 14.507726581016167 19.833589534702647 43.75525939032715 21.903424493954034 3 18.75863418063671 26.126106747061762 30.05101175958396 25.06424731271757 4 12.724537714982137 18.386808723512573 38.29133199159955 30.597321569905745 5 13.874103801882143 37.14077386363908 35.280969152418166 13.704153182060614 6 29.98065532877484 37.424603215458674 18.671395037233253 13.92334641853323 7 26.98912769102838 32.600656232471096 22.362499404787183 18.047716671713335 8 24.307075761261103 37.04126557596101 20.66876733126429 17.98289133151359 9 25.297178957834298 18.006994003380257 21.434813119722254 35.26101391906319 10-11 24.65123286729319 26.973436134630063 28.075393378218354 20.299937619858397 12-13 25.597561493527305 24.21363424351714 28.564212477830047 21.624591785125507 14-15 22.56204047961927 25.63322830010345 26.450329099830473 25.354402120446807 16-17 21.891973332259653 29.067610844253533 27.06382575036802 21.976590073118793 18-19 21.844126495087266 27.794627586142234 29.192849136210615 21.16839678255989 20-21 22.659541032348578 26.832111280796795 29.15039073721469 21.357956949639938 22-23 22.395608485025882 26.909915916079346 29.07023393907391 21.624241659820857 24-25 22.23540836033437 27.048954549073613 29.198872235822087 21.516764854769928 26-27 22.15292704266783 27.134648974189098 29.24595783653508 21.466466146607992 28-29 21.90470303052381 27.076068919287007 29.387839470926657 21.631388579262527 30-31 22.251750064817216 27.22489695535862 29.078448349517995 21.444904630306173 32-33 22.34209503328602 27.039000631533156 29.119416222044325 21.499488113136497 34-35 22.271669879813988 27.05898813231558 29.152182227621033 21.517159760249395 36-37 22.06160266953811 27.22767939926854 29.133309660369694 21.577408270823653 38-39 21.941579347933423 27.05317639451273 29.34576799634565 21.659476261208194 40-41 22.216896013045925 26.914405845866835 29.221819233908885 21.64687890717836 42-43 22.25350631855438 26.97775049309562 29.04350937153508 21.725233816814917 44-45 22.104956675983843 27.247493479913253 28.874671232712267 21.772878611390635 46-47 22.412586414375475 27.091014250688033 28.42891770882026 22.06748162611623 48-49 22.341804891228346 27.11242152286328 28.38944908851214 22.156324497396234 50-51 22.076036044176206 27.336548008068274 28.534985868202245 22.05243007955327 52-53 22.303334419287975 27.327291590051367 28.52899710693409 21.84037688372657 54-55 22.33906820900193 27.244584839605412 28.292615726011476 22.123731225381178 56-57 22.483369902082632 27.538064880077822 28.010180595671745 21.9683846221678 58-59 22.219552697593894 27.736272278052304 28.375366568914956 21.66880845543885 60-61 22.458141603186267 27.937750198938048 27.996444554795985 21.607663643079704 62-63 22.181110946178162 28.221117433616854 27.953772177853892 21.643999442351095 64-65 22.15994714761482 28.17169908688547 27.96483458649494 21.70351917900477 66-67 22.31890647936417 28.103551774007187 27.772964509830622 21.80457723679802 68-69 22.243916949529694 27.943460892277848 28.07602192756708 21.736600230625378 70-71 22.363756937228825 27.51972645133181 28.179859103641157 21.93665750779821 72-73 22.567635629743155 27.395651536368614 28.16552425548588 21.87118857840235 74-75 22.270735452919364 27.50822320889339 28.207956615743583 22.01308472244366 76-77 22.27636135979355 27.513709300531247 28.13210546371017 22.077823875965034 78-79 22.35916976044251 27.44885795718109 28.03056486793876 22.16140741443764 80-81 22.342265879223984 27.524725464407624 28.05754596081984 22.075462695548545 82-83 22.399787312062045 27.49884225035906 28.12032384551406 21.98104659206483 84-85 22.455243312255917 27.4718184216118 28.042158798660623 22.03077946747166 86-87 22.236598224362105 27.549514757915265 28.10863772983174 22.105249287890885 88-89 22.362522952145593 27.53179911198779 28.00606562399015 22.099612311876463 90-91 22.39007878733602 27.560346535430348 27.978725425195922 22.070849252037704 92-93 22.405281004487147 27.591146977852414 27.976268922003232 22.027303095657203 94-95 22.28036206483809 27.66667651565356 27.975158845063575 22.077802574444775 96-97 22.390878613705308 27.781768742951325 28.011099511177544 21.816253132165823 98-99 23.456223352197693 29.722987988717662 28.1459717268961 18.67481693218854 100 22.44054362992891 30.549359312518813 22.117102546436318 24.89299451111596 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 755.0 1 740.5 2 1029.5 3 1444.5 4 1926.5 5 2938.0 6 3815.0 7 4799.0 8 6181.5 9 7043.5 10 7112.5 11 7011.0 12 7608.5 13 9410.5 14 13186.0 15 17851.5 16 22032.5 17 25393.0 18 26320.0 19 24502.0 20 21727.0 21 19322.0 22 18446.0 23 20129.5 24 24360.5 25 31329.0 26 40921.5 27 51577.5 28 62497.0 29 74506.5 30 86085.5 31 97627.0 32 110635.5 33 123751.0 34 137425.5 35 150354.0 36 163635.5 37 175695.5 38 183339.0 39 189565.5 40 197150.0 41 203406.0 42 208623.5 43 219248.5 44 230723.5 45 236626.0 46 235857.0 47 232612.5 48 230436.5 49 226635.5 50 220954.5 51 214428.5 52 206417.5 53 196231.0 54 184861.5 55 171746.5 56 158058.5 57 143702.5 58 128045.0 59 111684.5 60 94336.0 61 76844.5 62 60513.0 63 46596.5 64 34932.0 65 25518.5 66 18513.5 67 13895.0 68 10464.0 69 7550.0 70 5486.0 71 3862.5 72 2587.0 73 1713.0 74 1084.0 75 699.5 76 452.0 77 272.0 78 180.0 79 118.0 80 69.0 81 38.5 82 22.5 83 16.5 84 12.0 85 7.5 86 5.5 87 3.0 88 2.0 89 2.5 90 3.0 91 2.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0027577427765064586 3 0.0017098005214340043 4 0.0 5 7.353980737350556E-5 6 1.2869466290363473E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 2.4823548243049017E-4 26-27 0.0019309874288120797 28-29 0.007055211676586889 30-31 0.002531858373919023 32-33 0.0052671112625136554 34-35 0.002811116634708709 36-37 0.001122999124153493 38-39 3.733496312892379E-5 40-41 4.696831282775075E-5 42-43 0.002231301855904228 44-45 4.3825918877080875E-4 46-47 2.9798386042512875E-4 48-49 0.0016970886783141258 50-51 4.49821660379757E-4 52-53 0.0 54-55 0.004714244342360929 56-57 0.04636130301873711 58-59 0.07008979523651675 60-61 0.03311145437612883 62-63 0.01407260170095906 64-65 0.0016032543373718793 66-67 0.0 68-69 0.002206135145727893 70-71 0.0038549056236879572 72-73 0.013105763402614887 74-75 0.016050156739811913 76-77 0.021733357997485093 78-79 0.006300881423301327 80-81 0.008239739139288525 82-83 0.03343680715568082 84-85 0.0189550892583249 86-87 0.013729418584547794 88-89 0.00644393079778665 90-91 4.7197099926997885E-5 92-93 0.0 94-95 0.0 96-97 3.675171217039074E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 47.0 20-21 219.0 22-23 492.0 24-25 611.0 26-27 1499.0 28-29 3285.0 30-31 9777.0 32-33 12490.0 34-35 17016.0 36-37 28221.0 38-39 34511.0 40-41 33650.0 42-43 38353.0 44-45 45779.0 46-47 46111.0 48-49 44091.0 50-51 38664.0 52-53 36581.0 54-55 39788.0 56-57 41243.0 58-59 41214.0 60-61 40930.0 62-63 40274.0 64-65 44645.0 66-67 50015.0 68-69 51738.0 70-71 59046.0 72-73 43140.0 74-75 41301.0 76-77 43926.0 78-79 45105.0 80-81 45011.0 82-83 41846.0 84-85 41631.0 86-87 42830.0 88-89 45019.0 90-91 45694.0 92-93 45356.0 94-95 52617.0 96-97 165602.0 98-99 372289.0 100-101 3567574.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.76920372061812 #Duplication Level Percentage of deduplicated Percentage of total 1 90.79177170028143 78.7792973481757 2 6.646998695498402 11.535095678807673 3 1.483417249902053 3.8614480067829096 4 0.49768994654820536 1.7273664144697911 5 0.22436239099390462 0.9733873005697542 6 0.11858260305664982 0.6173590825406184 7 0.06741296038114841 0.40945582249052775 8 0.04202530517374627 0.291720181283355 9 0.029222414965270505 0.22820451095969962 >10 0.09539077032700337 1.2755986908859476 >50 0.002333414067802349 0.13637229407768625 >100 7.277397645410883E-4 0.11636129861270189 >500 3.240451995863272E-5 0.01917589216543937 >1k 3.240451986411197E-5 0.02915747817823592 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.8384951843376388E-5 0.0 0.0 0.0 3 0.0 1.8384951843376388E-5 0.0 0.0 0.0 4 0.0 3.6769903686752775E-5 0.0 0.0 0.0 5 0.0 5.515485553012917E-5 0.0 1.8384951843376388E-5 0.0 6 0.0 5.515485553012917E-5 0.0 1.8384951843376388E-5 3.6769903686752775E-5 7 1.8384951843376388E-5 5.515485553012917E-5 0.0 3.6769903686752775E-5 5.515485553012917E-5 8 1.8384951843376388E-5 1.1030971106025834E-4 0.0 3.6769903686752775E-5 5.515485553012917E-5 9 1.8384951843376388E-5 2.0223447027714028E-4 0.0 3.6769903686752775E-5 5.515485553012917E-5 10-11 1.8384951843376388E-5 2.0223447027714028E-4 0.0 4.596237960844097E-5 5.515485553012917E-5 12-13 1.8384951843376388E-5 2.0223447027714028E-4 0.0 6.434733145181735E-5 6.434733145181735E-5 14-15 1.8384951843376388E-5 3.76891512789216E-4 0.0 7.353980737350555E-5 7.353980737350555E-5 16-17 1.8384951843376388E-5 3.860839887109042E-4 0.0 8.273228329519375E-5 7.353980737350555E-5 18-19 2.757742776506458E-5 3.9527646463259234E-4 0.0 9.192475921688194E-5 7.353980737350555E-5 20-21 5.515485553012916E-5 4.0446894055428057E-4 0.0 9.192475921688194E-5 9.192475921688194E-5 22-23 7.353980737350555E-5 4.0446894055428057E-4 0.0 1.0111723513857014E-4 1.1030971106025834E-4 24-25 9.192475921688194E-5 4.3204636831934513E-4 0.0 1.3788713882532293E-4 1.1030971106025834E-4 26-27 1.1030971106025834E-4 4.5962379608440975E-4 0.0 2.0223447027714028E-4 1.1030971106025834E-4 28-29 1.1030971106025834E-4 4.5962379608440975E-4 0.0 5.423560793796035E-4 1.1030971106025834E-4 30-31 1.1030971106025834E-4 5.147786516145389E-4 0.0 0.0013145240568014117 1.1030971106025834E-4 32-33 1.286946629036347E-4 5.147786516145389E-4 0.0 0.0031989816207474916 1.2869466290363473E-4 34-35 1.470796147470111E-4 5.883184589880444E-4 0.0 0.00565337269183824 1.470796147470111E-4 36-37 1.470796147470111E-4 6.6185826636155E-4 0.0 0.009486635151182216 1.470796147470111E-4 38-39 1.470796147470111E-4 6.6185826636155E-4 0.0 0.015553669259496425 1.470796147470111E-4 40-41 1.470796147470111E-4 7.905529292651847E-4 0.0 0.02177697545847933 1.470796147470111E-4 42-43 1.470796147470111E-4 7.905529292651847E-4 0.0 0.028138168796287562 1.470796147470111E-4 44-45 1.470796147470111E-4 8.181303570302494E-4 0.0 0.035216375255987475 1.654645665903875E-4 46-47 1.470796147470111E-4 8.457077847953139E-4 0.0 0.04236812152306089 1.838495184337639E-4 48-49 1.470796147470111E-4 8.457077847953139E-4 0.0 0.04963936997711625 2.2061942212051668E-4 50-51 1.470796147470111E-4 9.192475921688195E-4 0.0 0.05713123785329213 2.2061942212051668E-4 52-53 1.470796147470111E-4 9.192475921688195E-4 0.0 0.0638601302279679 2.2061942212051668E-4 54-55 1.470796147470111E-4 9.284400680905076E-4 0.0 0.07041436556013157 2.2061942212051668E-4 56-57 1.470796147470111E-4 9.744024476989486E-4 0.0 0.07518526056348775 2.5738932580726947E-4 58-59 1.470796147470111E-4 9.92787399542325E-4 0.0 0.08043416431477171 2.7577427765064586E-4 60-61 1.470796147470111E-4 0.001047942255072454 0.0 0.08602318967515812 2.941592294940222E-4 62-63 1.470796147470111E-4 0.0010663272069158305 0.0 0.09166736989107468 2.941592294940222E-4 64-65 1.470796147470111E-4 0.0012134068216628417 0.0 0.09638311003890071 2.941592294940222E-4 66-67 1.470796147470111E-4 0.0012134068216628417 0.0 0.1015492815068895 2.941592294940222E-4 68-69 1.562720906686993E-4 0.00122259929758453 0.0 0.10637533136577579 2.941592294940222E-4 70-71 1.654645665903875E-4 0.0012317917735062182 0.0 0.11105430160991508 2.941592294940222E-4 72-73 1.746570425120757E-4 0.0012317917735062182 0.0 0.11468532959898192 2.941592294940222E-4 74-75 1.838495184337639E-4 0.0012777541531146588 0.0 0.11756257456247032 2.941592294940222E-4 76-77 1.838495184337639E-4 0.0013421014845664764 0.0 0.12065124647215755 2.941592294940222E-4 78-79 1.838495184337639E-4 0.0013421014845664764 0.0 0.12234266204174818 2.941592294940222E-4 80-81 2.0223447027714028E-4 0.0013512939604881646 0.0 0.12283905574151935 3.033517054157104E-4 82-83 2.0223447027714028E-4 0.0013604864364098529 0.0 0.12324352468207361 3.125441813373986E-4 84-85 2.0223447027714028E-4 0.0013604864364098529 0.0 0.12353768391156765 3.125441813373986E-4 86-87 2.0223447027714028E-4 0.0013880638641749173 0.0 0.12359283876709778 3.125441813373986E-4 88 2.0223447027714028E-4 0.0014707961474701111 0.0 0.12360203124301947 3.30929133180775E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10320 0.0 41.87748 1 CTTATAC 4810 0.0 36.542892 1 GTATCAA 17505 0.0 35.241707 1 ATCAACG 20000 0.0 30.054937 3 TCAACGC 20115 0.0 29.925526 4 TATCAAC 20630 0.0 29.469067 2 CAACGCA 20565 0.0 29.22921 5 TATACAC 7415 0.0 28.824472 3 AACGCAG 21260 0.0 28.353958 6 ACGCAGA 23680 0.0 25.438284 7 TTATACA 7535 0.0 25.422243 2 CGCAGAG 24265 0.0 24.807415 8 ACATCTC 8225 0.0 22.977493 8 ACACATC 8180 0.0 22.84313 6 TACACAT 9270 0.0 22.366156 5 GCAGAGT 27325 0.0 22.15425 9 GTACATG 18970 0.0 21.252756 1 TACATGG 18600 0.0 20.918604 2 GAGTACT 15440 0.0 20.902412 12-13 TATGCCG 5285 0.0 20.7474 42-43 >>END_MODULE