##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139441_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8378128 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.798971202158764 32.0 30.0 33.0 18.0 33.0 2 31.433502567638023 33.0 31.0 33.0 28.0 33.0 3 31.09519763842233 33.0 31.0 33.0 28.0 33.0 4 32.11379152956364 33.0 33.0 33.0 30.0 34.0 5 32.21665961656351 33.0 33.0 33.0 31.0 34.0 6 35.74690718499407 38.0 36.0 38.0 31.0 38.0 7 36.793411845701094 38.0 37.0 38.0 35.0 38.0 8 36.703419785422234 38.0 38.0 38.0 34.0 38.0 9 37.04975681918443 38.0 38.0 38.0 36.0 38.0 10-11 37.17456387632177 38.0 38.0 38.0 36.0 38.0 12-13 37.23063200991916 38.0 38.0 38.0 36.0 38.0 14-15 37.277799646890095 38.0 38.0 38.0 37.0 38.0 16-17 37.284991706977976 38.0 38.0 38.0 37.0 38.0 18-19 37.31118538652071 38.0 38.0 38.0 37.0 38.0 20-21 37.28719915979667 38.0 38.0 38.0 37.0 38.0 22-23 37.311124669171406 38.0 38.0 38.0 37.0 38.0 24-25 37.33436242376738 38.0 38.0 38.0 37.0 38.0 26-27 37.30881454458955 38.0 38.0 38.0 37.0 38.0 28-29 37.28664246373525 38.0 38.0 38.0 37.0 38.0 30-31 37.28170979101809 38.0 38.0 38.0 37.0 38.0 32-33 37.21496759235853 38.0 38.0 38.0 36.5 38.0 34-35 37.22250195876359 38.0 38.0 38.0 37.0 38.0 36-37 37.21439660061655 38.0 38.0 38.0 37.0 38.0 38-39 37.17778212453876 38.0 38.0 38.0 36.0 38.0 40-41 37.20300423782959 38.0 38.0 38.0 37.0 38.0 42-43 37.17534110938817 38.0 38.0 38.0 36.0 38.0 44-45 37.14812132347224 38.0 38.0 38.0 36.0 38.0 46-47 37.117292166475046 38.0 38.0 38.0 36.0 38.0 48-49 37.075969252772566 38.0 38.0 38.0 36.0 38.0 50-51 37.05079097141234 38.0 38.0 38.0 36.0 38.0 52-53 37.01953091710388 38.0 38.0 38.0 36.0 38.0 54-55 36.99472383804505 38.0 38.0 38.0 36.0 38.0 56-57 36.96404643796192 38.0 38.0 38.0 36.0 38.0 58-59 36.96430880752861 38.0 38.0 38.0 36.0 38.0 60-61 36.983699987924055 38.0 38.0 38.0 36.0 38.0 62-63 36.98913663536083 38.0 38.0 38.0 36.0 38.0 64-65 36.984714314695125 38.0 38.0 38.0 36.0 38.0 66-67 36.98659928931587 38.0 38.0 38.0 36.0 38.0 68-69 36.987473555349425 38.0 38.0 38.0 36.0 38.0 70-71 36.97530886644669 38.0 38.0 38.0 36.0 38.0 72-73 36.951941328145836 38.0 38.0 38.0 36.0 38.0 74-75 36.94946819997543 38.0 38.0 38.0 36.0 38.0 76-77 36.95025206490647 38.0 38.0 38.0 36.0 38.0 78-79 36.92833744110119 38.0 38.0 38.0 36.0 38.0 80-81 36.90479557992292 38.0 38.0 38.0 35.5 38.0 82-83 36.90573160045548 38.0 38.0 38.0 35.0 38.0 84-85 36.85336413880135 38.0 38.0 38.0 35.0 38.0 86-87 36.83998204231804 38.0 38.0 38.0 35.0 38.0 88-89 36.849203022644176 38.0 38.0 38.0 35.0 38.0 90-91 36.82574379966266 38.0 38.0 38.0 35.0 38.0 92-93 36.830686155163306 38.0 38.0 38.0 35.0 38.0 94-95 36.78218017616455 38.0 38.0 38.0 35.0 38.0 96-97 36.75686161632699 38.0 38.0 38.0 35.0 38.0 98-99 36.83425108975672 38.0 38.0 38.0 35.0 38.0 100 35.16687391804353 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 10.0 18 46.0 19 76.0 20 111.0 21 278.0 22 794.0 23 2032.0 24 4703.0 25 9264.0 26 16070.0 27 25844.0 28 39548.0 29 56952.0 30 78107.0 31 102324.0 32 132974.0 33 179980.0 34 265372.0 35 457525.0 36 1221466.0 37 5784652.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.15541753480014 20.794991434840814 14.561259985524213 25.48833104483484 2 13.10901594798996 20.825596230854888 44.405945102609586 21.65944271854557 3 16.66730324482987 26.92353232130137 31.50804093706852 24.90112349680024 4 11.072580891578644 19.14779769418658 41.2185156397706 28.561105774464174 5 12.295523714611784 37.74234475092935 36.96861053348521 12.99352100097366 6 27.444257913045867 39.92635557367158 19.894474817962795 12.73491169531976 7 24.665489076496453 33.513206472043215 24.339306386737753 17.481998064722582 8 22.794196985293137 37.709247220858884 22.406568627263752 17.08998716658423 9 24.631087039968833 17.13292038507886 22.36497222291185 35.87102035204045 10-11 22.903976878844535 27.49627959849742 30.173464764443796 19.426278758214245 12-13 24.050754536096846 24.917165266512995 30.014449528582045 21.017630668808117 14-15 21.18568133597386 26.31309762753684 27.758826315377373 24.742394721111925 16-17 20.681051900854225 29.502974888901196 28.348426999444264 21.46754621080031 18-19 20.52561144924021 28.580799911388322 30.27662623440463 20.616962404966838 20-21 21.480993296891366 27.75876066046242 29.964853693525235 20.795392349120974 22-23 21.09000430014345 28.012901027170283 29.79822151319094 21.098873159495334 24-25 20.964346434867313 28.06226757617294 30.14337645997453 20.830009528985215 26-27 21.065779074570628 28.291878675583977 29.89283949084432 20.749502759001075 28-29 20.702949605923095 28.269548602818244 30.085604251253883 20.941897540004778 30-31 21.152631121959363 28.36215848335815 29.81939415763576 20.66581623704673 32-33 21.434016083252512 27.96260902105348 29.805979326355835 20.79739556933817 34-35 21.035412033114003 28.103411714853216 29.94626408997036 20.91491216206243 36-37 20.89521333412009 28.393662897047367 29.876482850058583 20.834640918773957 38-39 20.809736646721486 27.987562536150577 30.167097018089894 21.035603799038043 40-41 21.015342147315945 27.891140221450307 30.14613854231999 20.947379088913756 42-43 21.237312800316968 27.837049825229737 29.993758095400942 20.93187927905236 44-45 21.037052448061875 28.365310295268838 29.711157838070097 20.886479418599198 46-47 21.271699967959133 27.9069118741617 29.32667851253162 21.494709645347555 48-49 21.304542797935806 27.852771315416142 29.4632699124939 21.379415974154153 50-51 20.945300309944802 28.081114218739128 29.490175206201 21.483410265115072 52-53 21.08125774420018 28.147832835600077 29.607208427475385 21.16370099272436 54-55 21.165851769876685 28.05717988515535 29.332751232077563 21.444217112890406 56-57 21.528393983518235 28.332296035684074 28.865189896695 21.274120084102695 58-59 21.028920795707208 28.67003430636878 29.464262224406124 20.836782673517888 60-61 21.336427036331262 29.024996461988593 28.78884160569768 20.849734895982465 62-63 21.05539386579435 29.178959870668248 28.71135409889573 21.054292164641673 64-65 20.91303016416191 29.211012081939618 28.779494162465895 21.096463591432574 66-67 21.12288886761116 29.11227922393888 28.63301675540133 21.13181515304863 68-69 21.130811912238766 28.970964288600516 28.82389311849152 21.074330680669203 70-71 21.106352359134416 28.52078863868679 28.95661608159311 21.416242920585677 72-73 21.320798089367003 28.270131151211835 29.19154426286006 21.217526496561103 74-75 21.275558789136863 28.420317801119488 28.95537092484665 21.348752484897 76-77 21.188966345763035 28.446925973684817 28.88498467072652 21.479123009825624 78-79 21.254182307766452 28.403706914554476 28.895264625920515 21.446846151758553 80-81 21.179046443279606 28.41054205342262 28.95344448799346 21.45696701530431 82-83 21.337346934956095 28.299106040328546 29.083938119686596 21.27960890502876 84-85 21.722241379885094 28.27356945039649 28.7432750121397 21.26091415757871 86-87 21.238947715009225 28.45681883087937 28.88219303836444 21.42204041574696 88-89 21.420596382821312 28.306114414985007 28.86389186569391 21.409397336499776 90-91 21.56605211389592 28.333863839308876 28.803872805521085 21.29621124127412 92-93 21.558393557589582 28.344035398964223 28.79469481207002 21.302876231376175 94-95 21.359040220767934 28.5106661625591 28.808679485030737 21.32161413164223 96-97 21.362828392025953 28.64184225529885 28.886441680793396 21.108887671881803 98-99 22.38486838037059 30.552251201316498 29.17317338012794 17.889707038184973 100 21.299016628776464 31.61610763934089 23.0057119390458 24.079163792836848 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 914.0 1 1058.5 2 1993.5 3 3137.0 4 4344.0 5 6231.5 6 7519.5 7 8675.0 8 10045.5 9 10864.5 10 11121.0 11 11415.0 12 12942.0 13 16382.0 14 22800.5 15 30119.5 16 35206.5 17 37646.5 18 37056.5 19 34291.0 20 31365.5 21 29759.5 22 31747.0 23 38020.0 24 47903.0 25 62026.5 26 81119.0 27 102563.0 28 121935.0 29 143554.0 30 165775.5 31 185548.5 32 209607.0 33 233722.5 34 257826.5 35 283536.0 36 307994.0 37 329442.0 38 340788.5 39 344686.0 40 352414.5 41 356295.0 42 358663.0 43 377970.0 44 392749.5 45 388379.0 46 373186.0 47 356111.0 48 341938.0 49 326249.0 50 310221.5 51 291684.5 52 269942.0 53 249748.5 54 230160.0 55 205134.5 56 178896.0 57 152872.5 58 127480.5 59 107130.5 60 87884.5 61 67707.5 62 49384.0 63 35323.5 64 25002.0 65 17326.0 66 12094.5 67 8634.5 68 6184.5 69 4303.5 70 3083.0 71 2186.5 72 1555.0 73 1048.0 74 658.0 75 430.0 76 272.0 77 158.5 78 96.0 79 73.5 80 55.0 81 42.5 82 36.5 83 24.0 84 14.5 85 9.5 86 4.0 87 2.0 88 2.0 89 1.5 90 1.5 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0024707189959379946 3 0.0 4 0.0 5 0.0053114490492386845 6 3.9388273848286874E-4 7 1.1935840560086931E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 9.805633348615821E-5 44-45 1.8520664400437013E-5 46-47 0.0 48-49 0.0 50-51 6.3301836449577236E-6 52-53 9.756879604505841E-4 54-55 0.0020684894855531747 56-57 0.0023503757590402543 58-59 0.0015406325850450403 60-61 0.0036925602020600537 62-63 0.0015795224864604063 64-65 0.0014789021888220826 66-67 1.9595894808696092E-4 68-69 1.5711977322288313E-4 70-71 1.7277158518344058E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 9.358196188968183E-5 80-81 2.9075667097568054E-4 82-83 7.3392685508819746E-6 84-85 1.4815805827604619E-5 86-87 0.0 88-89 0.0 90-91 4.5777100615778295E-5 92-93 2.3900241932126395E-4 94-95 0.0 96-97 0.0 98-99 8.529199287300108E-6 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 92.0 20-21 291.0 22-23 529.0 24-25 729.0 26-27 1635.0 28-29 4388.0 30-31 14188.0 32-33 18073.0 34-35 24959.0 36-37 40717.0 38-39 50836.0 40-41 49903.0 42-43 56469.0 44-45 67067.0 46-47 69542.0 48-49 65117.0 50-51 58979.0 52-53 56454.0 54-55 60202.0 56-57 63127.0 58-59 62265.0 60-61 63474.0 62-63 61375.0 64-65 68619.0 66-67 78337.0 68-69 81806.0 70-71 99613.0 72-73 68329.0 74-75 62657.0 76-77 65883.0 78-79 67149.0 80-81 66641.0 82-83 63547.0 84-85 62992.0 86-87 64343.0 88-89 67095.0 90-91 68442.0 92-93 68594.0 94-95 81870.0 96-97 241122.0 98-99 548994.0 100-101 5561684.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.97811463498853 #Duplication Level Percentage of deduplicated Percentage of total 1 86.9047901000661 69.50481264952703 2 8.192731710963157 13.104784719062343 3 2.533047095669804 6.07764992979913 4 1.0538492060830196 3.3713949044839757 5 0.5063113224390581 2.0246912493511813 6 0.2818788886453894 1.352648524155847 7 0.16651742812958256 0.9322424968969851 8 0.10450615967804212 0.6686564495034295 9 0.07056866616384536 0.5079553984881234 >10 0.1829186904976312 2.0428265688369773 >50 0.0017770991380266932 0.09347586532852345 >100 8.882692484376113E-4 0.14956772196276216 >500 1.615226598178682E-4 0.08541125708821073 >1k 5.3840618082570307E-5 0.08388226551551516 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 1.1935840560086931E-5 0.0 4 0.0 1.1935840560086931E-5 0.0 1.1935840560086931E-5 0.0 5 0.0 8.355088392060851E-5 0.0 1.1935840560086931E-5 0.0 6 0.0 8.355088392060851E-5 0.0 1.1935840560086931E-5 0.0 7 0.0 8.355088392060851E-5 0.0 2.3871681120173862E-5 0.0 8 0.0 8.355088392060851E-5 0.0 2.3871681120173862E-5 0.0 9 0.0 8.355088392060851E-5 0.0 7.161504336052159E-5 0.0 10-11 0.0 8.951880420065197E-5 0.0 7.161504336052159E-5 0.0 12-13 0.0 1.4323008672104316E-4 0.0 9.548672448069545E-5 0.0 14-15 0.0 1.8500552868134742E-4 0.0 1.551659272811301E-4 0.0 16-17 0.0 2.1484513008156476E-4 0.0 1.9694136924143437E-4 0.0 18-19 0.0 2.3871681120173863E-4 0.0 2.267809706416517E-4 0.0 20-21 0.0 2.6258849232191247E-4 0.0 2.56620572041869E-4 0.0 22-23 0.0 2.745243328819994E-4 0.0 2.804922531620429E-4 0.0 24-25 1.1935840560086931E-5 2.8646017344208637E-4 0.0 3.103318545622602E-4 0.0 26-27 2.3871681120173862E-5 2.9242809372212984E-4 0.0 3.46139376242521E-4 0.0 28-29 2.3871681120173862E-5 3.0436393428221674E-4 0.0 4.177544196030426E-4 0.0 30-31 2.3871681120173862E-5 3.46139376242521E-4 0.0 9.668030853670414E-4 0.0 32-33 2.3871681120173862E-5 4.058185790429557E-4 0.0 0.002536366119018473 0.0 34-35 2.3871681120173862E-5 4.416261007232164E-4 0.0 0.004487876050592686 0.0 36-37 2.3871681120173862E-5 5.848561874442597E-4 0.0 0.00752554747313481 0.0 38-39 2.3871681120173862E-5 6.146957888444769E-4 0.0 0.012407306262210364 0.0 40-41 2.3871681120173862E-5 6.445353902446943E-4 0.0 0.017629236507248396 0.0 42-43 2.3871681120173862E-5 6.445353902446943E-4 0.0 0.0228332629914463 0.0 44-45 2.3871681120173862E-5 6.445353902446943E-4 0.0 0.02879521535120972 0.0 46-47 2.3871681120173862E-5 6.505033105247378E-4 0.0 0.03473329602985297 0.0 48-49 2.3871681120173862E-5 6.564712308047813E-4 0.0 0.04086831807773765 0.0 50-51 2.3871681120173862E-5 7.579258755655202E-4 0.0 0.04730770405990455 0.0 52-53 2.3871681120173862E-5 8.653484406063025E-4 0.0 0.05365160331759075 0.0 54-55 2.3871681120173862E-5 9.608351650869979E-4 0.0 0.059744849923515135 0.0 56-57 2.3871681120173862E-5 0.001038418128727563 0.0 0.06448934654614968 0.0 58-59 2.3871681120173862E-5 0.0011339048532082584 0.0 0.06943675245830572 0.0 60-61 2.3871681120173862E-5 0.0011697123748885192 0.0 0.07441996589214202 0.0 62-63 2.3871681120173862E-5 0.00120551989656878 0.0 0.07936737180429805 0.0 64-65 2.3871681120173862E-5 0.0012532632588091277 0.0 0.08415961178917294 0.0 66-67 2.3871681120173862E-5 0.0012651990993692145 0.0 0.08910701770132898 0.0 68-69 2.3871681120173862E-5 0.001283102860209345 0.0 0.09400071233096463 0.0 70-71 2.3871681120173862E-5 0.0013010066210494757 0.0 0.09805889812139418 0.0 72-73 2.3871681120173862E-5 0.0013129424616095625 0.0 0.10140690139849856 0.0 74-75 2.3871681120173862E-5 0.0013129424616095625 0.0 0.10417601640843874 0.0 76-77 2.3871681120173862E-5 0.0013129424616095625 0.0 0.10664673540437672 0.0 78-79 2.3871681120173862E-5 0.0013129424616095625 0.0 0.1083177530827889 0.0 80-81 2.3871681120173862E-5 0.0013487499832898233 0.0 0.10888470550939303 0.0 82-83 2.3871681120173862E-5 0.0013487499832898233 0.0 0.10936810705207656 0.0 84-85 2.3871681120173862E-5 0.0013487499832898233 0.0 0.1095531125807579 0.0 86-87 2.3871681120173862E-5 0.0013487499832898233 0.0 0.10966053514579868 0.0 88 2.3871681120173862E-5 0.0013487499832898233 0.0 0.10966650306607872 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9930 0.0 49.01403 1 CTTATAC 8565 0.0 41.545433 1 GTATCAA 19180 0.0 40.115288 1 ATCAACG 22285 0.0 33.987587 3 CAACGCA 23005 0.0 32.868088 5 TCAACGC 23260 0.0 32.5813 4 TATCAAC 24285 0.0 31.612125 2 AACGCAG 24025 0.0 31.594614 6 TATACAC 12325 0.0 31.507456 3 ACGCAGA 26455 0.0 28.66019 7 TTATACA 13120 0.0 28.262632 2 CGCAGAG 26875 0.0 28.228205 8 ACACATC 14815 0.0 24.477797 6 ACATCTC 14830 0.0 24.193512 8 GCAGAGT 32080 0.0 23.701483 9 TACACAT 17490 0.0 22.202938 5 CATCTCC 16585 0.0 21.556038 9 CACATCT 16880 0.0 21.280653 7 GAGTACT 20305 0.0 20.344744 12-13 TATGCCG 10260 0.0 20.080336 42-43 >>END_MODULE