##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139438_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7292314 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.816645717669317 18.0 18.0 31.0 18.0 33.0 2 30.77093512429662 32.0 29.0 33.0 27.0 33.0 3 31.023296034701744 33.0 31.0 33.0 27.0 33.0 4 32.207429356442965 33.0 33.0 33.0 30.0 34.0 5 32.58769795156928 33.0 33.0 34.0 31.0 34.0 6 36.43265498441235 38.0 37.0 38.0 34.0 38.0 7 36.72427709503458 38.0 37.0 38.0 34.0 38.0 8 36.724320016938385 38.0 38.0 38.0 34.0 38.0 9 37.1146963775833 38.0 38.0 38.0 36.0 38.0 10-11 37.173208668743555 38.0 38.0 38.0 36.0 38.0 12-13 37.22719551023173 38.0 38.0 38.0 36.0 38.0 14-15 37.2282740430541 38.0 38.0 38.0 36.0 38.0 16-17 37.23605531796903 38.0 38.0 38.0 36.0 38.0 18-19 37.27506892873785 38.0 38.0 38.0 37.0 38.0 20-21 37.26307870619522 38.0 38.0 38.0 37.0 38.0 22-23 37.296102674861025 38.0 38.0 38.0 37.0 38.0 24-25 37.31783361138841 38.0 38.0 38.0 37.0 38.0 26-27 37.30007045653459 38.0 38.0 38.0 37.0 38.0 28-29 37.2784427695719 38.0 38.0 38.0 37.0 38.0 30-31 37.274220522423896 38.0 38.0 38.0 37.0 38.0 32-33 37.214348113933035 38.0 38.0 38.0 36.5 38.0 34-35 37.22048391594969 38.0 38.0 38.0 37.0 38.0 36-37 37.21764949992304 38.0 38.0 38.0 37.0 38.0 38-39 37.19919841523226 38.0 38.0 38.0 36.5 38.0 40-41 37.19519794876503 38.0 38.0 38.0 36.5 38.0 42-43 37.169891200382665 38.0 38.0 38.0 36.0 38.0 44-45 37.14254428047865 38.0 38.0 38.0 36.0 38.0 46-47 37.10390638565572 38.0 38.0 38.0 36.0 38.0 48-49 37.052671885854906 38.0 38.0 38.0 36.0 38.0 50-51 37.021123054687266 38.0 38.0 38.0 36.0 38.0 52-53 36.98333080348979 38.0 38.0 38.0 36.0 38.0 54-55 36.95852526508343 38.0 38.0 38.0 36.0 38.0 56-57 36.92684062330099 38.0 38.0 38.0 36.0 38.0 58-59 36.933561512947406 38.0 38.0 38.0 36.0 38.0 60-61 36.95637792123031 38.0 38.0 38.0 36.0 38.0 62-63 36.96532033817488 38.0 38.0 38.0 36.0 38.0 64-65 36.96273836193744 38.0 38.0 38.0 36.0 38.0 66-67 36.967739538036525 38.0 38.0 38.0 36.0 38.0 68-69 36.96963561739339 38.0 38.0 38.0 36.0 38.0 70-71 36.95784269455173 38.0 38.0 38.0 36.0 38.0 72-73 36.93243697157645 38.0 38.0 38.0 36.0 38.0 74-75 36.929168941913815 38.0 38.0 38.0 36.0 38.0 76-77 36.92667345021112 38.0 38.0 38.0 36.0 38.0 78-79 36.89939846148136 38.0 38.0 38.0 35.0 38.0 80-81 36.87560927876667 38.0 38.0 38.0 35.0 38.0 82-83 36.873486610707175 38.0 38.0 38.0 35.0 38.0 84-85 36.82042398304395 38.0 38.0 38.0 35.0 38.0 86-87 36.80419162686175 38.0 38.0 38.0 35.0 38.0 88-89 36.80735904649835 38.0 38.0 38.0 35.0 38.0 90-91 36.78596841246976 38.0 38.0 38.0 35.0 38.0 92-93 36.79373027730223 38.0 38.0 38.0 35.0 38.0 94-95 36.74222932648986 38.0 38.0 38.0 34.5 38.0 96-97 36.70933359274339 38.0 38.0 38.0 34.0 38.0 98-99 36.79049629601319 38.0 38.0 38.0 35.0 38.0 100 35.14446091021774 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 11.0 18 21.0 19 59.0 20 109.0 21 274.0 22 827.0 23 1997.0 24 4425.0 25 8569.0 26 14387.0 27 23112.0 28 34648.0 29 50410.0 30 69696.0 31 92344.0 32 120389.0 33 162363.0 34 239431.0 35 422595.0 36 1221037.0 37 4825609.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.007373242567446 19.007697693763596 18.923622871971777 24.061306191697177 2 14.437824560364183 20.89465251231046 41.64822223063307 23.019300696692287 3 17.78120086436212 25.67761070080087 31.124427719376868 25.41676071546014 4 12.360671797731145 17.948980255101468 38.29104177357146 31.399306173595924 5 13.343451286062006 37.0778672321091 35.6370257826774 13.941655699151493 6 30.04225004456756 37.74617061832344 18.530641909959822 13.680937427149184 7 26.395338982934636 32.54257839144063 22.913426382901232 18.148656242723504 8 24.385880805461753 36.70022985845097 20.995585214789163 17.918304121298124 9 25.46985771594586 16.73356358489226 21.192559727954666 36.60401897120722 10-11 24.260646209145683 26.68331341738713 28.707917678805384 20.348122694661804 12-13 25.0869614226705 24.23267154979887 28.82790702649392 21.852460001036707 14-15 22.221794069756186 25.45798219879177 26.573368892233656 25.746854839218386 16-17 21.820316568924486 28.67257910177757 27.18821487939219 22.31888944990575 18-19 21.874243210042792 27.55192659010569 29.089799205026008 21.484030994825513 20-21 22.69388607007607 26.688414177634645 29.015963754575026 21.601735997714265 22-23 22.386390682627887 26.70228065133725 28.88627545042557 22.02505321560929 24-25 22.115689646021085 26.848917948589236 29.07656314868464 21.958829256705037 26-27 22.091058635769915 26.922833448954965 29.03927511924231 21.946832796032812 28-29 21.965326841881172 26.783167760779687 29.08501754198681 22.166487855352326 30-31 22.14556577661843 26.680297598921538 29.064992024970753 22.10914459948928 32-33 21.993584826672627 26.871797856073865 29.00221430855634 22.132403008697167 34-35 22.107856179534203 27.007915204179007 29.045172089485526 21.83905652680126 36-37 22.165167986944763 26.852057224857585 28.832356759708095 22.150418028489558 38-39 21.998696835211955 26.9181960589243 29.04068172859643 22.042425377267318 40-41 22.231262370338023 26.80087895689136 28.93777979975058 22.030078873020038 42-43 22.216331425652772 26.855052465903068 28.78555947316966 22.1430566352745 44-45 22.13334464144999 27.03943429588957 28.692184451334874 22.135036611325564 46-47 22.360837325767037 26.88698773677923 28.378458026036885 22.37371691141685 48-49 22.283191950720457 27.02942604292901 28.294742292879565 22.392639713470963 50-51 22.172052810088857 27.163205699363722 28.276671515592923 22.3880699749545 52-53 22.36479823954434 27.17884325376766 28.251839752901304 22.204518753786697 54-55 22.324508827846905 27.085730618279385 28.176237777472767 22.41352277640094 56-57 22.468212878384346 27.250958871156904 27.96405676526125 22.3167714851975 58-59 22.228167496334265 27.39114986942881 28.220414988083242 22.160267646153684 60-61 22.38068472750088 27.525922032871534 27.98500780079955 22.10838543882803 62-63 22.261612686670798 27.70006616285573 27.905414829293317 22.132906321180155 64-65 22.234400449316276 27.594556482607086 27.959015308537786 22.21202775953885 66-67 22.333752505715356 27.603102081002955 27.83545933416901 22.227686079112676 68-69 22.280582639797856 27.484031379612585 27.95616435799263 22.27922162259693 70-71 22.33004292486224 27.225968009466573 27.978099912861666 22.465889152809524 72-73 22.423617080710535 27.127100596302917 27.932816818638116 22.516465504348425 74-75 22.30847382913577 27.24400638349131 27.932541504591047 22.514978282781872 76-77 22.469407812656485 27.176598291191052 27.797652693387185 22.55634120276528 78-79 22.379201640819716 27.226458723761375 27.809325691992363 22.585013943426542 80-81 22.477276627125466 27.236496648489393 27.710977858175113 22.575248866210025 82-83 22.49113157995849 27.21449359396267 27.817622669622722 22.47675215645611 84-85 22.57049973653195 27.22967917665688 27.704106324592974 22.495714762218196 86-87 22.437907634628235 27.28931300807533 27.75450222119547 22.51827713610097 88-89 22.49468329803692 27.203140185918194 27.699610915444467 22.602565600600418 90-91 22.52899294435021 27.262424473505277 27.689683458474818 22.518899123669698 92-93 22.536586260357865 27.269775834796317 27.688591862850696 22.50504604199512 94-95 22.4847569992614 27.341169706850227 27.683727797643083 22.49034549624529 96-97 22.5235517307649 27.466229343892977 27.74196545402385 22.26825347131827 98-99 23.651656079348943 29.342679490761686 27.934366838585756 19.07129759130362 100 22.4906421268766 30.199064499801892 21.918915659784403 25.391377713537107 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2567.0 1 2676.0 2 3086.5 3 3507.0 4 4076.0 5 4983.0 6 5957.0 7 9209.0 8 12160.0 9 12213.0 10 11706.5 11 11564.0 12 12553.5 13 15145.5 14 20341.0 15 26043.0 16 29513.5 17 30201.0 18 28426.5 19 25849.5 20 23674.0 21 22648.5 22 23975.0 23 28168.5 24 35016.0 25 45137.0 26 57930.5 27 72075.5 28 87304.5 29 103238.0 30 117415.5 31 131768.5 32 147564.0 33 162093.0 34 176050.5 35 189950.0 36 205565.5 37 220503.0 38 231585.0 39 240485.0 40 251232.5 41 262168.0 42 270194.0 43 282940.0 44 295277.5 45 300083.5 46 299936.0 47 298353.0 48 297719.0 49 295456.5 50 291477.0 51 285932.0 52 275912.5 53 261327.5 54 247144.5 55 232571.5 56 215697.0 57 197126.5 58 176894.5 59 155645.0 60 132739.5 61 109643.5 62 88380.0 63 69913.0 64 54410.0 65 42226.0 66 32372.0 67 23756.5 68 17130.5 69 12578.0 70 9298.0 71 6614.0 72 4755.5 73 3293.5 74 2203.5 75 1442.0 76 901.0 77 527.5 78 314.5 79 188.0 80 112.5 81 70.0 82 42.5 83 24.5 84 18.5 85 17.5 86 12.5 87 7.0 88 4.5 89 2.5 90 1.0 91 0.5 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.001947255699631146 3 0.0 4 0.0 5 0.004456747199860017 6 1.9198295630166225E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 8.437738629795624E-5 44-45 1.4158741723949984E-5 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.00101390900801258 54-55 0.0021883983310892457 56-57 0.0026037211169105544 58-59 0.0017515022299232008 60-61 0.00391376878130123 62-63 0.0018474981165362441 64-65 0.001564766167831934 66-67 1.7713647186814823E-4 68-69 1.5554458102122796E-4 70-71 1.728620422613121E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 8.159053902218471E-5 80-81 4.942659791866243E-4 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 3.45678670934646E-5 92-93 3.667453801215447E-4 94-95 0.0 96-97 0.0 98-99 9.6950490196221E-6 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 80.0 20-21 310.0 22-23 589.0 24-25 732.0 26-27 1767.0 28-29 4488.0 30-31 11988.0 32-33 15431.0 34-35 21870.0 36-37 34211.0 38-39 39639.0 40-41 39664.0 42-43 45533.0 44-45 54556.0 46-47 55890.0 48-49 52548.0 50-51 47366.0 52-53 45123.0 54-55 48583.0 56-57 50452.0 58-59 52226.0 60-61 53021.0 62-63 52220.0 64-65 56557.0 66-67 62082.0 68-69 64072.0 70-71 71940.0 72-73 55251.0 74-75 54174.0 76-77 57069.0 78-79 58610.0 80-81 58294.0 82-83 55335.0 84-85 54500.0 86-87 56432.0 88-89 58904.0 90-91 59916.0 92-93 59918.0 94-95 73246.0 96-97 228071.0 98-99 503548.0 100-101 4876108.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.31189003585207 #Duplication Level Percentage of deduplicated Percentage of total 1 90.73571833669193 78.315713434006 2 6.542712009505208 11.294276790013246 3 1.5203225718848357 3.936657439306432 4 0.5349616064750498 1.8469418940590905 5 0.2516167981633991 1.0858760707126243 6 0.13348851428540454 0.6912987579630664 7 0.07973514040229908 0.4817463469277524 8 0.05052793494092653 0.348892925148795 9 0.037041872807589867 0.2877438647241644 >10 0.11131363873823623 1.4934334891003127 >50 0.0021737629359432553 0.1212497175576144 >100 3.124448343094129E-4 0.0514352924955904 >500 7.536833487063151E-5 0.04473397798529191 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.7426136614523183E-5 0.0 1.3713068307261591E-5 0.0 3 0.0 2.7426136614523183E-5 0.0 1.3713068307261591E-5 0.0 4 0.0 8.227840984356955E-5 0.0 4.1139204921784775E-5 0.0 5 0.0 9.599147815083114E-5 0.0 5.4852273229046365E-5 0.0 6 1.3713068307261591E-5 9.599147815083114E-5 0.0 5.4852273229046365E-5 0.0 7 1.3713068307261591E-5 9.599147815083114E-5 0.0 5.4852273229046365E-5 0.0 8 1.3713068307261591E-5 1.0970454645809273E-4 0.0 5.4852273229046365E-5 1.3713068307261591E-5 9 1.3713068307261591E-5 2.0569602460892387E-4 0.0 6.856534153630795E-5 1.3713068307261591E-5 10-11 2.7426136614523183E-5 2.0569602460892387E-4 0.0 1.234176147653543E-4 1.3713068307261591E-5 12-13 4.1139204921784775E-5 2.1255255876255467E-4 0.0 1.234176147653543E-4 1.3713068307261591E-5 14-15 4.1139204921784775E-5 2.879744344524934E-4 0.0 1.302741489189851E-4 2.7426136614523183E-5 16-17 4.799573907541557E-5 3.0168750275975497E-4 0.0 1.371306830726159E-4 2.7426136614523183E-5 18-19 5.4852273229046365E-5 3.1540057106701656E-4 0.0 1.371306830726159E-4 2.7426136614523183E-5 20-21 5.4852273229046365E-5 3.35970173527909E-4 0.0 1.371306830726159E-4 2.7426136614523183E-5 22-23 5.4852273229046365E-5 3.8396591260332456E-4 0.0 1.5084375137987749E-4 2.7426136614523183E-5 24-25 6.856534153630796E-5 4.7310085660052484E-4 0.0 1.782698879944007E-4 4.1139204921784775E-5 26-27 8.227840984356955E-5 5.073835273686788E-4 0.0 2.1255255876255467E-4 6.170880738267715E-5 28-29 8.227840984356955E-5 5.073835273686788E-4 0.0 5.005269932150481E-4 6.856534153630795E-5 30-31 8.913494399720035E-5 5.896619372122484E-4 0.0 0.0014261591039552053 6.856534153630795E-5 32-33 9.599147815083114E-5 5.896619372122484E-4 0.0 0.003174575313131058 6.856534153630795E-5 34-35 9.599147815083114E-5 6.856534153630795E-4 0.0 0.005505796925365529 8.227840984356955E-5 36-37 9.599147815083114E-5 8.090710301284339E-4 0.0 0.009276890709862467 8.227840984356955E-5 38-39 9.599147815083114E-5 8.502102350502187E-4 0.0 0.019095447617861763 8.227840984356955E-5 40-41 1.0970454645809273E-4 9.05062508279265E-4 0.0 0.0297230755559895 8.227840984356955E-5 42-43 1.0970454645809273E-4 9.530582473546805E-4 0.0 0.03624363953609239 8.227840984356955E-5 44-45 1.0970454645809273E-4 0.0010970454645809272 0.0 0.04355956147801644 8.913494399720035E-5 46-47 1.0970454645809273E-4 0.0011793238744244967 0.0 0.05199309848698232 1.0284801230446194E-4 48-49 1.0970454645809273E-4 0.0011861804085781275 0.0 0.060385496291026415 1.234176147653543E-4 50-51 1.0970454645809273E-4 0.0013918764331870516 0.0 0.0685310588655398 1.234176147653543E-4 52-53 1.0970454645809273E-4 0.0013987329673406824 0.0 0.08776363716647417 1.302741489189851E-4 54-55 1.0970454645809273E-4 0.0014055895014943131 0.0 0.11070560044452282 1.439872172262467E-4 56-57 1.0970454645809273E-4 0.0014398721722624671 0.0 0.13917393025039787 1.5084375137987749E-4 58-59 1.0970454645809273E-4 0.0014604417747233595 0.0 0.16195133670875939 1.5084375137987749E-4 60-61 1.0970454645809273E-4 0.0015152940479524059 0.0 0.1711528055429319 1.5084375137987749E-4 62-63 1.0970454645809273E-4 0.0015564332528741906 0.0 0.1825072261013445 1.645568196871391E-4 64-65 1.0970454645809273E-4 0.0017004204701004373 0.0 0.18833528013193068 1.645568196871391E-4 66-67 1.0970454645809273E-4 0.0017552727433294837 0.0 0.1937245159766845 1.645568196871391E-4 68-69 1.0970454645809273E-4 0.001775842345790376 0.0 0.19883263392113942 1.645568196871391E-4 70-71 1.0970454645809273E-4 0.0017826988799440069 0.0 0.20332366379176758 1.645568196871391E-4 72-73 1.0970454645809273E-4 0.0017964119482512685 0.0 0.20699190956396007 1.782698879944007E-4 74-75 1.0970454645809273E-4 0.001844407687326684 0.0 0.2097550928278733 1.782698879944007E-4 76-77 1.234176147653543E-4 0.0018992599605557304 0.0 0.2126074110357837 1.782698879944007E-4 78-79 1.234176147653543E-4 0.0019335426313238843 0.0 0.21436954031326683 1.782698879944007E-4 80-81 1.234176147653543E-4 0.0019403991654775151 0.0 0.21486321077232823 1.782698879944007E-4 82-83 1.234176147653543E-4 0.0019609687679384073 0.0 0.21521289401416338 1.782698879944007E-4 84-85 1.234176147653543E-4 0.0019883949045529305 0.0 0.2153911639021578 1.782698879944007E-4 86-87 1.371306830726159E-4 0.002036390643628346 0.0 0.21549401191446227 1.782698879944007E-4 88 1.371306830726159E-4 0.0021803778608545927 0.0 0.2155008684486159 1.782698879944007E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9015 0.0 50.284172 1 GTATCAA 16960 0.0 35.832134 1 TCAACGC 22060 0.0 30.471788 4 ATCAACG 22220 0.0 30.291082 3 CAACGCA 22790 0.0 29.476858 5 TATCAAC 23080 0.0 29.3868 2 AACGCAG 23470 0.0 28.658289 6 CTTATAC 6520 0.0 25.857994 1 ACGCAGA 26315 0.0 25.543606 7 CGCAGAG 27120 0.0 24.7854 8 TGGTATC 4200 0.0 22.118765 2 GCAGAGT 31120 0.0 21.613434 9 TATACAC 9000 0.0 21.264833 3 GTGGTAT 4070 0.0 21.028828 1 TACATGG 21770 0.0 20.625216 2 GAGTACT 18725 0.0 20.509556 12-13 ACATGGG 21995 0.0 19.729301 3 AGAGTAC 28355 0.0 19.519808 10-11 CAGAGTA 30465 0.0 19.410116 10-11 GTACATG 21265 0.0 19.13296 1 >>END_MODULE