##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139437_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9080891 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.485769292903086 18.0 18.0 30.0 18.0 33.0 2 30.65854462959637 32.0 29.0 33.0 27.0 33.0 3 30.99655199032782 33.0 31.0 33.0 27.0 33.0 4 32.21112102325642 33.0 33.0 33.0 30.0 34.0 5 32.60278941791064 33.0 33.0 34.0 31.0 34.0 6 36.47850943260964 38.0 37.0 38.0 34.0 38.0 7 36.757561895633366 38.0 37.0 38.0 34.0 38.0 8 36.765441078414 38.0 38.0 38.0 34.0 38.0 9 37.13095950606609 38.0 38.0 38.0 36.0 38.0 10-11 37.18958348910917 38.0 38.0 38.0 36.0 38.0 12-13 37.246656853385865 38.0 38.0 38.0 36.0 38.0 14-15 37.24692846770212 38.0 38.0 38.0 36.5 38.0 16-17 37.25568542778457 38.0 38.0 38.0 36.0 38.0 18-19 37.290286052326806 38.0 38.0 38.0 37.0 38.0 20-21 37.27672216636709 38.0 38.0 38.0 37.0 38.0 22-23 37.30574385312205 38.0 38.0 38.0 37.0 38.0 24-25 37.32896930235212 38.0 38.0 38.0 37.0 38.0 26-27 37.31039099641855 38.0 38.0 38.0 37.0 38.0 28-29 37.28813090569186 38.0 38.0 38.0 37.0 38.0 30-31 37.28342575570252 38.0 38.0 38.0 37.0 38.0 32-33 37.22438421814145 38.0 38.0 38.0 36.5 38.0 34-35 37.23326412167424 38.0 38.0 38.0 37.0 38.0 36-37 37.23054300866973 38.0 38.0 38.0 37.0 38.0 38-39 37.21377393516468 38.0 38.0 38.0 37.0 38.0 40-41 37.20685845747897 38.0 38.0 38.0 37.0 38.0 42-43 37.18338019941275 38.0 38.0 38.0 36.0 38.0 44-45 37.15873258348543 38.0 38.0 38.0 36.0 38.0 46-47 37.12753939967832 38.0 38.0 38.0 36.0 38.0 48-49 37.08276786800257 38.0 38.0 38.0 36.0 38.0 50-51 37.05071678745807 38.0 38.0 38.0 36.0 38.0 52-53 37.01497705387378 38.0 38.0 38.0 36.0 38.0 54-55 36.993323400737516 38.0 38.0 38.0 36.0 38.0 56-57 36.96355693395216 38.0 38.0 38.0 36.0 38.0 58-59 36.9705819000475 38.0 38.0 38.0 36.0 38.0 60-61 36.99285726761768 38.0 38.0 38.0 36.0 38.0 62-63 37.00095977695453 38.0 38.0 38.0 36.0 38.0 64-65 36.99930903495212 38.0 38.0 38.0 36.0 38.0 66-67 37.00430472279437 38.0 38.0 38.0 36.0 38.0 68-69 37.00712859440116 38.0 38.0 38.0 36.0 38.0 70-71 36.99649064915736 38.0 38.0 38.0 36.0 38.0 72-73 36.97273619322419 38.0 38.0 38.0 36.0 38.0 74-75 36.967114482368515 38.0 38.0 38.0 36.0 38.0 76-77 36.96485518920316 38.0 38.0 38.0 36.0 38.0 78-79 36.93846418398904 38.0 38.0 38.0 36.0 38.0 80-81 36.913127541084386 38.0 38.0 38.0 35.5 38.0 82-83 36.90947387263443 38.0 38.0 38.0 35.0 38.0 84-85 36.85817950205225 38.0 38.0 38.0 35.0 38.0 86-87 36.84022601431422 38.0 38.0 38.0 35.0 38.0 88-89 36.845823519953285 38.0 38.0 38.0 35.0 38.0 90-91 36.82250271620906 38.0 38.0 38.0 35.0 38.0 92-93 36.82640400031792 38.0 38.0 38.0 35.0 38.0 94-95 36.77237341518317 38.0 38.0 38.0 35.0 38.0 96-97 36.74516555010678 38.0 38.0 38.0 35.0 38.0 98-99 36.82205297002693 38.0 38.0 38.0 35.0 38.0 100 35.204526267929005 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 9.0 18 31.0 19 55.0 20 127.0 21 319.0 22 848.0 23 2299.0 24 5039.0 25 9794.0 26 16989.0 27 27096.0 28 41387.0 29 60867.0 30 84142.0 31 110972.0 32 147184.0 33 198929.0 34 294014.0 35 516715.0 36 1507896.0 37 6056179.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.14911895760009 18.972906953733943 19.842700457477136 24.035273631188833 2 14.325306925947935 20.915950017906123 41.781518412913904 22.977224643232034 3 17.732797365368665 25.54010393913989 31.13490735655785 25.59219133893359 4 12.323019844638592 17.933196202883618 38.7145490459031 31.0292349065747 5 13.31337843009314 37.06608960434338 35.793876421662965 13.826655543900513 6 30.0006056688401 38.001270803348135 18.587844556744013 13.410278971067749 7 26.350464948869007 32.499310915635924 23.22621205342075 17.924012082074327 8 24.117380111709302 37.057663174241384 21.0760706190615 17.748886094987814 9 25.317053139389074 16.946685077488542 21.329063414592248 36.40719836853014 10-11 24.09353883886504 26.820440857620692 28.959250804794372 20.12676949871989 12-13 24.926122337554762 24.32376404473966 29.058073706643984 21.692039911061592 14-15 22.049345157870523 25.66507515617135 26.767098074407013 25.518481611551113 16-17 21.68071392994366 28.70807501158201 27.494934142475667 22.11627691599866 18-19 21.668930945212313 27.84216879158664 29.277721756598552 21.21117850660249 20-21 22.42342764629959 27.003114228061666 29.196184034090166 21.377274091548582 22-23 22.17377509623532 26.90195946277818 29.070070677923503 21.854194763062992 24-25 21.94719152082755 27.040275540504734 29.191104736978556 21.821428201689162 26-27 21.88714978280327 27.21030357756134 29.095748301605067 21.806798338030323 28-29 21.81876215995174 27.228309692544418 29.18593900402665 21.766989143477197 30-31 22.123360330067367 27.060874227093773 29.0587214939701 21.757043948868755 32-33 21.931856850193107 27.16775512264223 29.006612686200967 21.893775340963696 34-35 21.98596369088022 27.204644937495726 29.059476528627005 21.74991484299705 36-37 22.0400637684748 27.157142432823388 28.983066044453054 21.819727754248756 38-39 21.818107782093026 27.288021810220403 29.087671786862266 21.8061986208243 40-41 22.11030490396713 27.101123285549818 28.97800185039706 21.810569960085992 42-43 22.034278560826262 27.181147219954287 28.827099197139493 21.95747502207996 44-45 22.035388033495813 27.327923841937434 28.689886190547536 21.946801934019213 46-47 22.110163054453245 27.278150540936057 28.46788006919107 22.143806335419626 48-49 22.04484005487676 27.386369813726745 28.462241360088676 22.106548771307818 50-51 22.027761482833014 27.517186237649188 28.336404437513586 22.118647842004215 52-53 22.207655274232913 27.433248575641787 28.293895666034658 22.065200484090642 54-55 22.161641639206817 27.351813025677274 28.27140289201633 22.21514244309958 56-57 22.21753080250735 27.494703364128643 28.179227198309526 22.10853863505448 58-59 22.11694725814917 27.542946009062202 28.298604280042532 22.041502452746094 60-61 22.201915103631173 27.539233701480192 28.2680976908746 21.990753504014034 62-63 22.127704345138792 27.62893680910234 28.220381569536297 22.022977276222573 64-65 22.114819394162645 27.56187406686928 28.196163739898633 22.127142799069443 66-67 22.189400499934106 27.59663913045749 28.06718052708427 22.146779842524136 68-69 22.136202842830567 27.52578484825914 28.180461776854 22.157550532056298 70-71 22.167814790654266 27.34038346788978 28.195145340650402 22.296656400805556 72-73 22.235580690865852 27.348528431977257 28.132077150906703 22.28381372625018 74-75 22.113904670847052 27.462343155166085 28.10114603627772 22.32260613770914 76-77 22.254981059680635 27.438390578792614 28.01267911929984 22.293949242226915 78-79 22.21909264843711 27.47327901761802 27.967377190608207 22.340251143336666 80-81 22.223417467114484 27.497110633274254 27.9277055836808 22.351766315930465 82-83 22.282643701703996 27.492352000927312 27.956652227946925 22.268352069421766 84-85 22.380266793963845 27.45493088014347 27.906121962822038 22.25868036307065 86-87 22.248713181386606 27.483448679245083 27.977153574919083 22.290684564449226 88-89 22.305958716237914 27.510748922537694 27.88315008831525 22.30014227290914 90-91 22.31972408162697 27.529111200624445 27.923064721169638 22.228099996578948 92-93 22.377554390583445 27.50424912966103 27.895437968912574 22.22275851084295 94-95 22.320728035477142 27.57261732532821 27.83952911165164 22.26712552754301 96-97 22.345895394165627 27.711739151682004 27.9339039008393 22.00846155331307 98-99 23.458341019003864 29.593033056730633 28.147259177912176 18.801366746353327 100 22.292445955009804 30.51626509132184 22.121636698999072 25.069652254669283 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1767.0 1 2040.5 2 2907.5 3 3660.5 4 4429.0 5 5642.0 6 6764.0 7 9960.5 8 13045.0 9 13434.0 10 13155.5 11 13268.5 12 14738.5 13 17761.0 14 23825.5 15 30793.0 16 34606.5 17 35240.0 18 33578.0 19 30747.0 20 28273.0 21 27295.5 22 28701.5 23 33734.5 24 42112.0 25 53870.0 26 70125.5 27 88122.0 28 105592.5 29 125361.0 30 145895.0 31 165996.0 32 187296.5 33 208248.0 34 229457.0 35 249174.0 36 270545.0 37 291283.5 38 306063.5 39 317815.0 40 331712.0 41 344721.5 42 352981.0 43 363782.0 44 371884.5 45 375960.5 46 377519.5 47 376237.0 48 375041.5 49 369128.5 50 359728.0 51 348715.0 52 334692.5 53 317765.5 54 298612.5 55 278068.5 56 255534.5 57 230722.5 58 204741.0 59 176888.5 60 147485.0 61 120186.0 62 95442.5 63 73439.0 64 55212.5 65 40926.5 66 30382.0 67 22900.5 68 17125.5 69 12482.5 70 9153.0 71 6691.0 72 4743.5 73 3309.0 74 2284.0 75 1526.0 76 984.0 77 585.5 78 348.0 79 197.0 80 120.5 81 74.5 82 51.0 83 31.0 84 20.0 85 14.5 86 11.5 87 9.5 88 5.5 89 1.5 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0021914149173247427 3 0.0 4 0.0 5 0.0045810482693823765 6 2.3125484052170654E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 9.582817669701132E-5 44-45 2.2692559557899014E-5 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0011848231969471483 54-55 0.002279578158186626 56-57 0.0024380322617944842 58-59 0.0016096222502733676 60-61 0.004156149666072593 62-63 0.0017968446319266622 64-65 0.0016272480553776282 66-67 2.0889423740055944E-4 68-69 1.1154077720126344E-4 70-71 1.5628506646178737E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 6.469027525323978E-5 80-81 2.415143130193904E-4 82-83 0.0 84-85 6.642977807804037E-6 86-87 0.0 88-89 0.0 90-91 4.7799097389158676E-5 92-93 2.206439742613288E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 88.0 20-21 322.0 22-23 586.0 24-25 714.0 26-27 2000.0 28-29 5002.0 30-31 13823.0 32-33 18106.0 34-35 25021.0 36-37 39826.0 38-39 46522.0 40-41 46375.0 42-43 53475.0 44-45 64503.0 46-47 65965.0 48-49 61911.0 50-51 56335.0 52-53 55358.0 54-55 59978.0 56-57 62407.0 58-59 61978.0 60-61 61274.0 62-63 59629.0 64-65 64499.0 66-67 68826.0 68-69 69923.0 70-71 72892.0 72-73 64545.0 74-75 64858.0 76-77 67618.0 78-79 69065.0 80-81 69109.0 82-83 65477.0 84-85 65141.0 86-87 67708.0 88-89 69804.0 90-91 71113.0 92-93 71311.0 94-95 87953.0 96-97 281478.0 98-99 626133.0 100-101 6202240.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.28542546464037 #Duplication Level Percentage of deduplicated Percentage of total 1 89.89816076671502 76.67002889477934 2 7.010451817866231 11.957787319721662 3 1.7257570143176255 4.415457636439986 4 0.6376791138921194 2.175389381528171 5 0.28544832007513243 1.2172290712887257 6 0.14808605086246138 0.7577749111910037 7 0.0878820923883215 0.5246543148042583 8 0.05527712730704934 0.3771466656675835 9 0.0390144918885145 0.29946307859988486 >10 0.11012257093474696 1.4068311600772003 >50 0.0017162997200575799 0.09690802853846547 >100 3.2156324653157204E-4 0.04420376735741809 >500 6.20784621091996E-5 0.03871938936558735 >1k 2.069232400745063E-5 0.018406380640712074 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.1012135262938405E-5 0.0 0.0 0.0 3 0.0 1.1012135262938405E-5 0.0 0.0 0.0 4 0.0 3.3036405788815215E-5 0.0 0.0 0.0 5 0.0 6.607281157763043E-5 0.0 0.0 0.0 6 0.0 6.607281157763043E-5 0.0 0.0 1.1012135262938405E-5 7 0.0 6.607281157763043E-5 0.0 0.0 1.1012135262938405E-5 8 0.0 6.607281157763043E-5 0.0 0.0 1.1012135262938405E-5 9 0.0 1.2113348789232246E-4 0.0 2.202427052587681E-5 1.1012135262938405E-5 10-11 0.0 1.2113348789232246E-4 0.0 2.202427052587681E-5 1.1012135262938405E-5 12-13 0.0 1.2113348789232246E-4 0.0 2.7530338157346013E-5 1.1012135262938405E-5 14-15 0.0 2.422669757846449E-4 0.0 3.854247342028442E-5 1.1012135262938405E-5 16-17 0.0 2.642912463105217E-4 0.0 4.404854105175362E-5 1.1012135262938405E-5 18-19 0.0 2.8631551683639853E-4 0.0 7.157887920909963E-5 1.1012135262938405E-5 20-21 0.0 2.9732765209933694E-4 0.0 9.360314973497644E-5 1.6518202894407608E-5 22-23 0.0 3.0833978736227534E-4 0.0 1.0461528499791485E-4 2.202427052587681E-5 24-25 0.0 3.3036405788815215E-4 0.0 1.2663955552379166E-4 2.202427052587681E-5 26-27 0.0 3.5238832841402896E-4 0.0 1.6518202894407608E-4 2.202427052587681E-5 28-29 0.0 3.5789439604549814E-4 0.0 3.4137619315109056E-4 2.202427052587681E-5 30-31 1.1012135262938405E-5 3.854247342028442E-4 0.0 9.745739707700489E-4 2.202427052587681E-5 32-33 1.1012135262938405E-5 3.964368694657826E-4 0.0 0.0022519816612709036 2.202427052587681E-5 34-35 1.1012135262938405E-5 4.294732752545978E-4 0.0 0.0038267170038710956 2.202427052587681E-5 36-37 1.1012135262938405E-5 4.5700361341194384E-4 0.0 0.005814407418831478 2.202427052587681E-5 38-39 1.1012135262938405E-5 4.62509681043413E-4 0.0 0.009013432712715085 2.202427052587681E-5 40-41 1.1012135262938405E-5 5.285824926210434E-4 0.0 0.012410676441331583 2.202427052587681E-5 42-43 1.1012135262938405E-5 5.451006955154511E-4 0.0 0.01581342623757955 2.202427052587681E-5 44-45 1.1012135262938405E-5 6.166795747245507E-4 0.0 0.019706216053028275 2.202427052587681E-5 46-47 1.1012135262938405E-5 6.827523863021811E-4 0.0 0.02430378252530506 2.202427052587681E-5 48-49 1.1012135262938405E-5 6.827523863021811E-4 0.0 0.029016976417842698 2.202427052587681E-5 50-51 1.1012135262938405E-5 7.5983733314275E-4 0.0 0.033647579295908295 2.202427052587681E-5 52-53 1.1012135262938405E-5 7.928737389315652E-4 0.0 0.038267170038710954 2.202427052587681E-5 54-55 1.1012135262938405E-5 8.369222799833188E-4 0.0 0.042996882134143 2.202427052587681E-5 56-57 1.1012135262938405E-5 8.479344152462573E-4 0.0 0.04747882118615894 2.202427052587681E-5 58-59 1.1012135262938405E-5 8.699586857721341E-4 0.0 0.051900193494228704 2.202427052587681E-5 60-61 1.1012135262938405E-5 8.864768886665416E-4 0.0 0.056062780623619426 2.202427052587681E-5 62-63 1.1012135262938405E-5 8.9748902392948E-4 0.0 0.0605722500137927 2.202427052587681E-5 64-65 1.1012135262938405E-5 0.0010186225118218024 0.0 0.06496609198370512 2.202427052587681E-5 66-67 1.1012135262938405E-5 0.0010241285794532716 0.0 0.06948106744150986 2.202427052587681E-5 68-69 1.1012135262938405E-5 0.001057164985242087 0.0 0.07394648829063138 2.202427052587681E-5 70-71 1.1012135262938405E-5 0.0010736831881364944 0.0 0.07813660575817946 2.202427052587681E-5 72-73 1.1012135262938405E-5 0.0010902013910309022 0.0 0.08118146115838193 2.202427052587681E-5 74-75 1.1012135262938405E-5 0.0011232377968197174 0.0 0.08368672193070043 2.202427052587681E-5 76-77 1.1012135262938405E-5 0.0011617802702400017 0.0 0.08618097056775595 2.202427052587681E-5 78-79 1.1012135262938405E-5 0.001167286337871471 0.0 0.0877832362485135 2.202427052587681E-5 80-81 1.6518202894407608E-5 0.0011838045407658786 0.0 0.08832283087639747 2.202427052587681E-5 82-83 2.202427052587681E-5 0.0012278530818176322 0.0 0.08865319493428564 2.202427052587681E-5 84-85 2.202427052587681E-5 0.0012553834199749783 0.0 0.08886242550428146 2.202427052587681E-5 86-87 2.202427052587681E-5 0.0012663955552379166 0.0 0.08898355899217378 2.202427052587681E-5 88 2.202427052587681E-5 0.001332468366815547 0.0 0.0890000771950682 2.202427052587681E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10145 0.0 47.65004 1 GTATCAA 18845 0.0 34.00365 1 TCAACGC 23755 0.0 29.577555 4 ATCAACG 24030 0.0 29.18509 3 CAACGCA 24505 0.0 28.637018 5 TATCAAC 25410 0.0 27.855923 2 AACGCAG 25355 0.0 27.692976 6 ACGCAGA 29215 0.0 24.019272 7 CGCAGAG 29600 0.0 23.692253 8 TGGTATC 5085 0.0 19.982527 2 GCAGAGT 35405 0.0 19.929792 9 TACATGG 23085 0.0 19.591845 2 GAGTACT 22055 0.0 19.525381 12-13 ACATGGG 23165 0.0 18.907804 3 AGAGTAC 31830 0.0 18.684055 10-11 GTACATG 22395 0.0 18.380589 1 CAGAGTA 34180 0.0 18.335527 10-11 GTGGTAT 5550 0.0 18.1525 1 GTACTTT 24420 0.0 17.493153 14-15 AGTACTT 24205 0.0 16.567463 12-13 >>END_MODULE