##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139436_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11342074 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.503879008371836 27.0 18.0 32.0 18.0 33.0 2 29.10189388642677 31.0 27.0 33.0 18.0 33.0 3 31.29476213962279 33.0 31.0 33.0 27.0 33.0 4 31.20441358432329 33.0 31.0 33.0 29.0 33.0 5 32.50537185703426 33.0 33.0 33.0 31.0 34.0 6 36.24235523414853 38.0 37.0 38.0 33.0 38.0 7 36.93274298862801 38.0 38.0 38.0 35.0 38.0 8 37.08209107082179 38.0 38.0 38.0 36.0 38.0 9 37.10892064361421 38.0 38.0 38.0 36.0 38.0 10-11 37.1961799931829 38.0 38.0 38.0 36.0 38.0 12-13 37.225927374481955 38.0 38.0 38.0 36.0 38.0 14-15 37.24763530902726 38.0 38.0 38.0 36.0 38.0 16-17 37.25879318897056 38.0 38.0 38.0 36.0 38.0 18-19 37.259908593437146 38.0 38.0 38.0 36.0 38.0 20-21 37.224172838669546 38.0 38.0 38.0 36.0 38.0 22-23 37.23616234920348 38.0 38.0 38.0 36.0 38.0 24-25 37.25466237307266 38.0 38.0 38.0 36.5 38.0 26-27 37.230497736347274 38.0 38.0 38.0 36.0 38.0 28-29 37.21009200251609 38.0 38.0 38.0 36.0 38.0 30-31 37.20741631027833 38.0 38.0 38.0 36.0 38.0 32-33 37.14637296611034 38.0 38.0 38.0 36.0 38.0 34-35 37.15950330535436 38.0 38.0 38.0 36.0 38.0 36-37 37.15568448695438 38.0 38.0 38.0 36.0 38.0 38-39 37.14701221608999 38.0 38.0 38.0 36.0 38.0 40-41 37.13738528711434 38.0 38.0 38.0 36.0 38.0 42-43 37.106953551482945 38.0 38.0 38.0 36.0 38.0 44-45 37.08264101675958 38.0 38.0 38.0 36.0 38.0 46-47 37.05636742365055 38.0 38.0 38.0 36.0 38.0 48-49 37.0130056437885 38.0 38.0 38.0 36.0 38.0 50-51 36.97997790698348 38.0 38.0 38.0 36.0 38.0 52-53 36.93790925830536 38.0 38.0 38.0 36.0 38.0 54-55 36.9060742788178 38.0 38.0 38.0 36.0 38.0 56-57 36.86706627650372 38.0 38.0 38.0 35.0 38.0 58-59 36.865894743362134 38.0 38.0 38.0 35.0 38.0 60-61 36.88604423428508 38.0 38.0 38.0 35.0 38.0 62-63 36.88969438150937 38.0 38.0 38.0 35.0 38.0 64-65 36.88150246448939 38.0 38.0 38.0 35.0 38.0 66-67 36.88027948214435 38.0 38.0 38.0 35.0 38.0 68-69 36.873044094281454 38.0 38.0 38.0 35.0 38.0 70-71 36.853271394707 38.0 38.0 38.0 35.0 38.0 72-73 36.82382468005328 38.0 38.0 38.0 35.0 38.0 74-75 36.81516499895946 38.0 38.0 38.0 35.0 38.0 76-77 36.808913748596694 38.0 38.0 38.0 35.0 38.0 78-79 36.77386138944881 38.0 38.0 38.0 35.0 38.0 80-81 36.738970160406645 38.0 38.0 38.0 35.0 38.0 82-83 36.73386143502493 38.0 38.0 38.0 35.0 38.0 84-85 36.678475042785934 38.0 38.0 38.0 34.5 38.0 86-87 36.65457365973826 38.0 38.0 38.0 34.0 38.0 88-89 36.65256581980594 38.0 38.0 38.0 34.0 38.0 90-91 36.61842917307681 38.0 38.0 38.0 34.0 38.0 92-93 36.61976393431872 38.0 38.0 38.0 34.0 38.0 94-95 36.56127583510455 38.0 38.0 38.0 34.0 38.0 96-97 36.52561878077092 38.0 38.0 38.0 34.0 38.0 98-99 36.612116411594855 38.0 38.0 38.0 34.0 38.0 100 34.75931319522312 38.0 34.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 5.0 18 36.0 19 75.0 20 211.0 21 476.0 22 1365.0 23 3307.0 24 7238.0 25 14148.0 26 24164.0 27 38786.0 28 58346.0 29 83383.0 30 113586.0 31 151545.0 32 199192.0 33 273196.0 34 405065.0 35 714888.0 36 2019653.0 37 7233409.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.859845915306146 24.124194569705683 14.631556803455876 24.3844027115323 2 13.403702720448635 22.84425824578159 40.960638503570294 22.791400530199475 3 17.314505265968112 27.066443050891753 30.848811249159546 24.770240433980593 4 12.599723824760797 19.048720718979613 39.3265993503481 29.024956105911492 5 13.376943687818235 38.12351272729389 35.4458333175361 13.053710267351775 6 29.135307338098315 38.84131911568391 19.2216435595919 12.80172998662588 7 25.520561759692274 33.00231509686853 24.27579823584293 17.201324907596266 8 23.707401309495953 37.18914195058152 21.83225924993965 17.271197489982875 9 25.18169075602928 16.898514328155503 21.885362412553473 36.03443250326175 10-11 23.51204462252671 27.226356484713467 29.625604629276797 19.635994263483028 12-13 24.391165143165175 24.77813140700722 29.65362860443337 21.177074845394237 14-15 21.721287482342294 26.151747026161175 27.14598317732718 24.98098231416935 16-17 21.409069452377054 28.99732006685902 27.93156260486398 21.662047875899944 18-19 21.4425113078966 28.378491446978742 29.354587176913142 20.82441006821151 20-21 22.21981277906638 27.564274124880228 29.123574236258808 21.092338859794584 22-23 21.955589464191434 27.47991286581738 28.94909425382054 21.615403416170643 24-25 21.750217142812804 27.582024344595958 29.005438963989054 21.662319548602184 26-27 21.681755370367046 27.736185636314794 28.937595679941385 21.64446331337678 28-29 21.667701351434424 27.753085378823833 28.99876411101146 21.580449158730286 30-31 21.90543875797062 27.601130778054696 28.915320337923994 21.578110126050685 32-33 21.779632894318333 27.669741264415848 28.87213254167012 21.678493299595697 34-35 21.889241450347765 27.70764215107749 28.843718564406302 21.559397834168443 36-37 21.819364866342035 27.6812423696557 28.848847395241705 21.65054536876056 38-39 21.7030992963937 27.791848401306023 28.925252472772833 21.579799829527442 40-41 21.93998448083148 27.647514376575653 28.806660605286865 21.605840537305998 42-43 21.83860690807961 27.72119510179838 28.628137960013433 21.81206003010858 44-45 21.903952600707974 27.755204819801477 28.537509759325758 21.803332820164794 46-47 21.918286516735552 27.782528118484883 28.39932872995637 21.899856634823195 48-49 21.881223493430042 27.859769793383947 28.3960143024667 21.86299241071931 50-51 21.926414241405627 27.955645910551763 28.270109402813098 21.847830445229512 52-53 22.067661109629892 27.859576961588782 28.220386042365924 21.8523758864154 54-55 21.996316064379705 27.801625816920083 28.25762234206119 21.94443577663902 56-57 22.028345323653912 27.864731471591746 28.22910895373757 21.877814251016765 58-59 21.99674505346726 27.891205437995005 28.249319817350145 21.862729691187592 60-61 22.064300707284783 27.84863986848542 28.286278867413245 21.800780556816544 62-63 22.03751168475174 27.910625861915584 28.263356898184988 21.78850555514769 64-65 22.027992833861994 27.816631814055746 28.221355354449095 21.934019997633154 66-67 22.04989337494514 27.848957397249656 28.14021284698135 21.960936380823856 68-69 21.99937401259233 27.840831031385534 28.22303901374461 21.936755942277525 70-71 22.00957762056774 27.728917696563084 28.238262266174075 22.023242416695112 72-73 22.057935246789555 27.73732739058832 28.163638771800247 22.041098590821875 74-75 21.994705625025503 27.80808366803676 28.12154082030004 22.0756698866377 76-77 22.103675359637652 27.746460194382294 28.0802707572357 22.06959368874436 78-79 22.04030917152483 27.759766097201393 28.069131876826237 22.130792854447538 80-81 22.034029483056372 27.84651026989817 28.035527636398477 22.08393261064698 82-83 22.082173607196214 27.813280096885485 28.087160940086477 22.01738535583183 84-85 22.1585396961337 27.78454811899364 28.00452900313783 22.05238318173483 86-87 22.079909182638065 27.787887119766946 28.053667469982997 22.078536227611995 88-89 22.104847539587546 27.794783213562173 28.00002268701935 22.100346559830925 90-91 22.152287709695965 27.82091881166672 27.97600194281581 22.050791535821507 92-93 22.14809658224692 27.802441141055105 28.013468897355096 22.035993379342873 94-95 22.152738790287376 27.849026832172534 27.938344356854255 22.05989002068583 96-97 22.188760193641603 27.941115354595546 28.01542283987994 21.854701611882913 98-99 23.22329577882563 29.857695534842048 28.316973350218568 18.60203533611375 100 22.030679633103986 30.80890365105257 22.29591906724503 24.86449764859841 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1377.0 1 1635.5 2 2659.5 3 3727.5 4 4655.0 5 6022.5 6 7205.0 7 9354.5 8 11588.0 9 12505.0 10 12629.0 11 12748.5 12 13990.5 13 16793.0 14 22956.0 15 30169.0 16 34254.0 17 34827.0 18 33354.0 19 31268.0 20 29429.0 21 29096.5 22 32059.5 23 39314.5 24 50729.5 25 66689.0 26 87044.0 27 110344.5 28 136145.5 29 164571.0 30 193131.5 31 222151.0 32 252215.5 33 281045.0 34 307773.0 35 332165.0 36 356983.5 37 381296.5 38 402188.5 39 418891.5 40 435288.5 41 449093.0 42 457002.0 43 464022.0 44 469411.5 45 471921.5 46 470191.5 47 467197.0 48 462128.5 49 449512.0 50 432573.5 51 412441.5 52 389604.5 53 364620.0 54 338431.5 55 310621.5 56 281657.0 57 251642.0 58 219982.0 59 187234.5 60 153878.0 61 123282.5 62 96326.5 63 73106.5 64 53747.5 65 39071.0 66 28628.0 67 21479.0 68 16031.5 69 11618.0 70 8489.0 71 6192.0 72 4388.0 73 2953.5 74 1933.5 75 1263.0 76 798.0 77 432.0 78 231.5 79 135.0 80 81.5 81 47.0 82 28.5 83 18.5 84 9.0 85 4.5 86 4.0 87 4.0 88 4.5 89 3.5 90 3.5 91 2.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0026891025398000402 3 0.0 4 0.0 5 0.003747110096442679 6 1.8515132241246176E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 7.17361497782658E-5 44-45 2.7032576011210952E-5 46-47 0.0 48-49 0.0 50-51 4.582412535721051E-6 52-53 0.0010270432934211106 54-55 0.0020231328809879813 56-57 0.0024956738936447154 58-59 0.0017377524518703462 60-61 0.0038071734498278153 62-63 0.0016777702035879352 64-65 0.0016115635885802124 66-67 2.2076028787333505E-4 68-69 1.8846273651952625E-4 70-71 2.287193550737082E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 1.101443496774698E-4 80-81 3.077627554796654E-4 82-83 5.083823608809128E-6 84-85 0.0 86-87 0.0 88-89 0.0 90-91 3.1484688838394445E-5 92-93 2.4875300647117716E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 71.0 20-21 293.0 22-23 528.0 24-25 712.0 26-27 1409.0 28-29 3302.0 30-31 10933.0 32-33 14711.0 34-35 21943.0 36-37 36735.0 38-39 43612.0 40-41 43983.0 42-43 51337.0 44-45 62349.0 46-47 64471.0 48-49 60368.0 50-51 55361.0 52-53 55222.0 54-55 60242.0 56-57 63852.0 58-59 63255.0 60-61 62321.0 62-63 62168.0 64-65 66755.0 66-67 71274.0 68-69 72242.0 70-71 71641.0 72-73 68773.0 74-75 71038.0 76-77 75141.0 78-79 76535.0 80-81 75845.0 82-83 73860.0 84-85 73690.0 86-87 77235.0 88-89 79957.0 90-91 81334.0 92-93 83143.0 94-95 106271.0 96-97 359402.0 98-99 827203.0 100-101 8091557.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.69348152981581 #Duplication Level Percentage of deduplicated Percentage of total 1 89.65473944823029 75.93172019519142 2 7.1399432271035845 12.09413299657262 3 1.7610658846069196 4.474524029122346 4 0.6451924463657513 2.1857437815781777 5 0.29708878238645436 1.258074165188132 6 0.16071847896165756 0.816708451766354 7 0.09584305839772107 0.5682097607317914 8 0.06409157902509048 0.43425111715025844 9 0.04590943105176234 0.3499406595744108 >10 0.13277451776072188 1.706932684459885 >50 0.0022817222960885546 0.12316986245486639 >100 3.1674689908820825E-4 0.039441007717107374 >500 3.4676914813073606E-5 0.01715128849265362 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.816729638688656E-6 2 0.0 8.816729638688656E-6 0.0 8.816729638688656E-6 1.763345927737731E-5 3 0.0 1.763345927737731E-5 0.0 1.763345927737731E-5 1.763345927737731E-5 4 0.0 4.408364819344328E-5 0.0 3.526691855475462E-5 1.763345927737731E-5 5 0.0 4.408364819344328E-5 0.0 3.526691855475462E-5 1.763345927737731E-5 6 0.0 4.408364819344328E-5 0.0 3.526691855475462E-5 1.763345927737731E-5 7 0.0 4.408364819344328E-5 0.0 4.408364819344328E-5 1.763345927737731E-5 8 0.0 5.290037783213193E-5 0.0 4.408364819344328E-5 2.6450188916065967E-5 9 0.0 7.935056674819791E-5 0.0 4.408364819344328E-5 2.6450188916065967E-5 10-11 0.0 7.935056674819791E-5 0.0 5.730874265147626E-5 2.6450188916065967E-5 12-13 8.816729638688656E-6 7.935056674819791E-5 0.0 7.053383710950924E-5 2.6450188916065967E-5 14-15 8.816729638688656E-6 8.816729638688656E-5 0.0 7.053383710950924E-5 3.526691855475462E-5 16-17 8.816729638688656E-6 8.816729638688656E-5 0.0 7.494220192885358E-5 3.526691855475462E-5 18-19 8.816729638688656E-6 8.816729638688656E-5 0.0 1.0139239084491953E-4 3.526691855475462E-5 20-21 8.816729638688656E-6 8.816729638688656E-5 0.0 1.0580075566426387E-4 3.526691855475462E-5 22-23 8.816729638688656E-6 1.0580075566426387E-4 0.0 1.1461748530295253E-4 3.9675283374098955E-5 24-25 8.816729638688656E-6 1.1461748530295252E-4 0.0 1.278425797609855E-4 6.171710747082059E-5 26-27 8.816729638688656E-6 1.2343421494164118E-4 0.0 1.3225094458032985E-4 6.171710747082059E-5 28-29 8.816729638688656E-6 1.2343421494164118E-4 0.0 1.719262279544288E-4 6.171710747082059E-5 30-31 8.816729638688656E-6 1.4547603903836283E-4 0.0 4.0116119856033384E-4 6.171710747082059E-5 32-33 8.816729638688656E-6 1.5429276867705147E-4 0.0 0.0010844577455587047 7.053383710950924E-5 34-35 8.816729638688656E-6 1.895596872318061E-4 0.0 0.0020498896409951125 7.053383710950924E-5 36-37 8.816729638688656E-6 2.204182409672164E-4 0.0 0.00357518386848825 7.053383710950924E-5 38-39 8.816729638688656E-6 2.204182409672164E-4 0.0 0.006158485652624026 7.935056674819791E-5 40-41 8.816729638688656E-6 2.380517002445937E-4 0.0 0.00902392278519784 7.935056674819791E-5 42-43 8.816729638688656E-6 2.55685159521971E-4 0.0 0.01161163293415296 7.935056674819791E-5 44-45 8.816729638688656E-6 3.041771725347586E-4 0.0 0.014900273089383829 7.935056674819791E-5 46-47 8.816729638688656E-6 3.262189966314803E-4 0.0 0.01885457633233569 7.935056674819791E-5 48-49 8.816729638688656E-6 3.262189966314803E-4 0.0 0.022698670454803945 7.935056674819791E-5 50-51 8.816729638688656E-6 3.5266918554754625E-4 0.0 0.02651190602353679 7.935056674819791E-5 52-53 8.816729638688656E-6 3.5266918554754625E-4 0.0 0.030404492159017832 7.935056674819791E-5 54-55 8.816729638688656E-6 3.614859151862349E-4 0.0 0.034305895024137556 7.935056674819791E-5 56-57 8.816729638688656E-6 3.703026448249236E-4 0.0 0.03826019826708943 7.935056674819791E-5 58-59 8.816729638688656E-6 3.703026448249236E-4 0.0 0.04229826044160882 8.375893156754223E-5 60-61 8.816729638688656E-6 3.791193744636122E-4 0.0 0.04645975683106987 8.816729638688656E-5 62-63 8.816729638688656E-6 4.055695633796782E-4 0.0 0.05033911787209288 8.816729638688656E-5 64-65 8.816729638688656E-6 4.4965321157312143E-4 0.0 0.05430223784468344 8.816729638688656E-5 66-67 8.816729638688656E-6 4.4965321157312143E-4 0.0 0.05843728404522841 9.25756612062309E-5 68-69 8.816729638688656E-6 5.025535894052533E-4 0.0 0.06266931427179898 1.0580075566426387E-4 70-71 8.816729638688656E-6 5.11370319043942E-4 0.0 0.06616514757353903 1.0580075566426387E-4 72-73 8.816729638688656E-6 5.11370319043942E-4 0.0 0.06876608281695218 1.410676742190185E-4 74-75 8.816729638688656E-6 5.422288727793523E-4 0.0 0.07085564774132139 1.410676742190185E-4 76-77 8.816729638688656E-6 5.64270696876074E-4 0.0 0.07309509706954831 1.410676742190185E-4 78-79 8.816729638688656E-6 5.730874265147626E-4 0.0 0.0744264232449903 1.410676742190185E-4 80-81 8.816729638688656E-6 5.730874265147626E-4 0.0 0.07491134337511816 1.4547603903836283E-4 82-83 8.816729638688656E-6 5.730874265147626E-4 0.0 0.07529046274958179 1.4988440385770715E-4 84-85 8.816729638688656E-6 5.730874265147626E-4 0.0 0.07552851444982638 1.4988440385770715E-4 86-87 8.816729638688656E-6 5.863125209727956E-4 0.0 0.07564754029994866 1.5429276867705147E-4 88 8.816729638688656E-6 6.259878043468946E-4 0.0 0.07565635702958735 1.5870113349639582E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11160 0.0 45.16484 1 GTATCAA 20030 0.0 35.69504 1 TCAACGC 24160 0.0 30.392967 4 ATCAACG 24385 0.0 30.094515 3 CAACGCA 24920 0.0 29.501322 5 AACGCAG 25800 0.0 28.545166 6 TATCAAC 26680 0.0 27.736874 2 ACGCAGA 30060 0.0 24.514462 7 CGCAGAG 30165 0.0 24.385431 8 GCAGAGT 37135 0.0 19.832106 9 AGAGTAC 32930 0.0 19.448904 10-11 GAGTACT 22215 0.0 17.871464 12-13 TACATGG 26800 0.0 17.56127 2 CAGAGTA 36700 0.0 17.121754 10-11 ACATGGG 27045 0.0 16.930677 3 GTACATG 26135 0.0 16.915184 1 AGTACTT 25145 0.0 16.522972 12-13 GTACTTT 25425 0.0 15.649829 14-15 CATGGGG 20240 0.0 15.3497925 4 GTGGTAT 6155 0.0 14.136385 1 >>END_MODULE